Literature DB >> 21578971

(1R,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Tricia Naicker, Michael McKay, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

In the title compound, C(26)H(27)NO(4), a precursor to novel chiral catalysts, the N-containing six-membered ring assumes a half-boat conformation. Various C-H⋯π interactions and intermolecular short contacts (C⋯H = 2.81-2.90 Å) link the mol-ecules together in the crystal structure.

Entities:  

Year:  2009        PMID: 21578971      PMCID: PMC2972025          DOI: 10.1107/S1600536809050521

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Chakka et al. (2009 ▶). For crystallograhic details of analogous mol­ecules, see Alberch et al. (2004 ▶); Aubry et al. (2006 ▶).

Experimental

Crystal data

C26H27NO4 M = 417.49 Triclinic, a = 6.0199 (1) Å b = 9.2592 (2) Å c = 11.0429 (2) Å α = 73.365 (1)° β = 74.694 (1)° γ = 75.737 (1)° V = 559.05 (2) Å3 Z = 1 Cu Kα radiation μ = 0.67 mm−1 T = 173 K 0.22 × 0.12 × 0.08 mm

Data collection

Bruker Kappa Duo APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.692, T max = 0.753 7546 measured reflections 3561 independent reflections 3536 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.077 S = 1.07 3561 reflections 281 parameters 3 restraints H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1483 Friedel pairs Flack parameter: −0.01 (14) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and X-SEED (Barbour, 2001 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: ORTEP-3. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809050521/hg2607sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050521/hg2607Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H27NO4Z = 1
Mr = 417.49F(000) = 222
Triclinic, P1Dx = 1.240 Mg m3
Hall symbol: P 1Melting point: 420 K
a = 6.0199 (1) ÅCu Kα radiation, λ = 1.54184 Å
b = 9.2592 (2) ÅCell parameters from 7546 reflections
c = 11.0429 (2) Åθ = 4.3–68.9°
α = 73.365 (1)°µ = 0.67 mm1
β = 74.694 (1)°T = 173 K
γ = 75.737 (1)°Needle, yellow
V = 559.04 (2) Å30.22 × 0.12 × 0.08 mm
Bruker Kappa Duo APEXII diffractometer3561 independent reflections
Radiation source: fine-focus sealed tube3536 reflections with I > 2σ(I)
graphiteRint = 0.012
0.5° φ scans and ω scansθmax = 68.9°, θmin = 4.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −6→7
Tmin = 0.692, Tmax = 0.753k = −10→10
7546 measured reflectionsl = −13→13
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.028w = 1/[σ2(Fo2) + (0.0475P)2 + 0.0785P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.077(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.16 e Å3
3561 reflectionsΔρmin = −0.16 e Å3
281 parametersExtinction correction: SHELXS97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraintsExtinction coefficient: 0.0426 (18)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1483 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.01 (14)
Experimental. Half sphere of data collected using SAINT strategy (Bruker, 2006). Crystal to detector distance = 50 mm; combination of φ and ω scans of 0.5°, 80 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2537 (2)0.14310 (13)0.46249 (10)0.0396 (3)
O20.51646 (19)0.27489 (12)0.53134 (10)0.0364 (3)
O3−0.3602 (2)0.20138 (13)1.02179 (14)0.0468 (3)
O4−0.1914 (3)0.23948 (15)1.16480 (12)0.0514 (4)
N1−0.0675 (2)−0.10502 (13)1.05031 (11)0.0262 (3)
C1−0.1027 (2)−0.07812 (15)0.91791 (14)0.0247 (3)
H1−0.2641−0.01790.91330.030*
C20.0745 (2)0.01232 (15)0.81875 (14)0.0256 (3)
C30.0848 (3)0.03078 (16)0.68640 (14)0.0283 (3)
H3−0.0128−0.01690.66120.034*
C40.2340 (3)0.11668 (16)0.59283 (14)0.0298 (3)
C50.3790 (2)0.18793 (15)0.63010 (14)0.0280 (3)
C60.3717 (2)0.16708 (16)0.75934 (14)0.0270 (3)
H60.47250.21220.78460.032*
C70.2187 (2)0.08063 (15)0.85461 (13)0.0252 (3)
C80.2148 (2)0.06332 (17)0.99497 (14)0.0292 (3)
H8A0.23700.16061.00670.035*
H8B0.3468−0.01801.02060.035*
C9−0.0138 (3)0.02263 (16)1.08230 (14)0.0269 (3)
H90.0152−0.01551.17210.032*
C10−0.2107 (3)0.16235 (17)1.08378 (14)0.0308 (3)
C11−0.3714 (5)0.3725 (2)1.1814 (2)0.0633 (6)
H11A−0.33930.41991.24220.095*
H11B−0.52440.34121.21530.095*
H11C−0.37250.44661.09790.095*
C12−0.0842 (3)−0.23317 (16)0.89052 (13)0.0263 (3)
C13−0.2621 (3)−0.26446 (17)0.84954 (14)0.0293 (3)
H13−0.3966−0.18760.83630.035*
C14−0.2445 (3)−0.40782 (18)0.82777 (16)0.0346 (3)
H14−0.3673−0.42850.79980.042*
C15−0.0496 (3)−0.52049 (17)0.84649 (16)0.0368 (4)
H15−0.0378−0.61840.83150.044*
C160.1286 (3)−0.48936 (17)0.88734 (16)0.0382 (4)
H160.2632−0.56620.90020.046*
C170.1116 (3)−0.34743 (17)0.90937 (16)0.0330 (3)
H170.2344−0.32740.93770.040*
C180.1052 (3)0.0782 (2)0.41938 (17)0.0462 (4)
H18A0.13490.10620.32470.069*
H18B−0.05910.11760.45410.069*
H18C0.1379−0.03370.44970.069*
C190.6262 (3)0.3736 (2)0.56531 (18)0.0429 (4)
H19A0.71980.42940.48720.064*
H19B0.72830.31230.62490.064*
H19C0.50590.44690.60720.064*
C20−0.2513 (3)−0.17390 (17)1.15037 (14)0.0304 (3)
H20A−0.2927−0.25421.12190.037*
H20B−0.3934−0.09441.16350.037*
C21−0.1694 (3)−0.24341 (17)1.27560 (14)0.0311 (3)
C22−0.2758 (3)−0.1877 (2)1.38479 (16)0.0404 (4)
H22−0.4093−0.10751.38260.049*
C23−0.1904 (4)−0.2472 (2)1.49690 (17)0.0506 (5)
H23−0.2661−0.20861.57140.061*
C240.0038 (4)−0.3620 (2)1.50087 (18)0.0536 (5)
H240.0642−0.40161.57750.064*
C250.1101 (4)−0.4193 (3)1.39405 (19)0.0553 (5)
H250.2436−0.49941.39710.066*
C260.0240 (3)−0.3612 (2)1.28165 (17)0.0442 (4)
H260.0980−0.40221.20820.053*
U11U22U33U12U13U23
O10.0486 (7)0.0478 (7)0.0253 (5)−0.0190 (5)−0.0072 (5)−0.0048 (5)
O20.0368 (6)0.0380 (6)0.0331 (6)−0.0168 (5)−0.0028 (5)−0.0019 (4)
O30.0365 (6)0.0370 (6)0.0757 (9)0.0013 (5)−0.0246 (6)−0.0222 (6)
O40.0722 (10)0.0442 (7)0.0412 (6)0.0050 (6)−0.0192 (6)−0.0217 (5)
N10.0261 (6)0.0264 (6)0.0261 (6)−0.0075 (5)−0.0070 (5)−0.0023 (5)
C10.0222 (7)0.0244 (7)0.0275 (7)−0.0042 (5)−0.0065 (6)−0.0050 (5)
C20.0230 (7)0.0222 (6)0.0291 (7)−0.0020 (5)−0.0053 (6)−0.0044 (5)
C30.0290 (7)0.0276 (7)0.0295 (7)−0.0058 (6)−0.0086 (6)−0.0058 (6)
C40.0312 (8)0.0294 (8)0.0275 (7)−0.0033 (6)−0.0076 (6)−0.0052 (6)
C50.0250 (7)0.0236 (7)0.0311 (7)−0.0033 (5)−0.0040 (6)−0.0027 (5)
C60.0230 (7)0.0245 (7)0.0337 (8)−0.0024 (5)−0.0085 (6)−0.0065 (6)
C70.0228 (7)0.0222 (7)0.0297 (7)−0.0006 (5)−0.0088 (6)−0.0049 (6)
C80.0263 (8)0.0325 (7)0.0302 (7)−0.0075 (6)−0.0081 (6)−0.0058 (6)
C90.0275 (7)0.0291 (7)0.0250 (6)−0.0072 (5)−0.0069 (6)−0.0050 (5)
C100.0316 (8)0.0305 (7)0.0298 (7)−0.0109 (6)−0.0013 (6)−0.0065 (6)
C110.0849 (16)0.0475 (11)0.0494 (11)0.0069 (10)−0.0024 (11)−0.0257 (9)
C120.0268 (7)0.0247 (7)0.0253 (7)−0.0068 (5)−0.0022 (6)−0.0040 (5)
C130.0283 (8)0.0314 (7)0.0285 (7)−0.0065 (6)−0.0038 (6)−0.0085 (6)
C140.0344 (8)0.0366 (8)0.0369 (8)−0.0141 (6)−0.0029 (7)−0.0126 (6)
C150.0429 (9)0.0267 (7)0.0385 (8)−0.0109 (7)0.0038 (7)−0.0115 (6)
C160.0353 (8)0.0269 (8)0.0444 (9)−0.0015 (6)−0.0021 (7)−0.0057 (6)
C170.0285 (7)0.0303 (8)0.0387 (8)−0.0053 (6)−0.0058 (6)−0.0069 (6)
C180.0482 (10)0.0640 (12)0.0332 (8)−0.0173 (8)−0.0102 (8)−0.0148 (8)
C190.0440 (9)0.0401 (9)0.0446 (9)−0.0217 (7)−0.0066 (8)−0.0005 (7)
C200.0289 (7)0.0335 (7)0.0287 (7)−0.0100 (6)−0.0052 (6)−0.0042 (6)
C210.0307 (8)0.0308 (8)0.0297 (7)−0.0122 (6)−0.0048 (6)0.0001 (6)
C220.0433 (9)0.0407 (9)0.0340 (8)−0.0071 (7)−0.0067 (7)−0.0055 (7)
C230.0641 (13)0.0568 (11)0.0323 (8)−0.0186 (9)−0.0081 (8)−0.0083 (8)
C240.0515 (11)0.0696 (13)0.0350 (9)−0.0169 (10)−0.0173 (8)0.0073 (8)
C250.0405 (10)0.0633 (12)0.0423 (10)0.0024 (8)−0.0087 (8)0.0080 (9)
C260.0414 (10)0.0460 (10)0.0322 (8)0.0004 (7)−0.0032 (7)−0.0005 (7)
O1—C41.3668 (18)C12—C171.393 (2)
O1—C181.428 (2)C13—C141.390 (2)
O2—C51.3681 (17)C13—H130.9500
O2—C191.428 (2)C14—C151.382 (2)
O3—C101.197 (2)C14—H140.9500
O4—C101.3363 (19)C15—C161.385 (3)
O4—C111.446 (2)C15—H150.9500
N1—C91.4538 (18)C16—C171.379 (2)
N1—C201.4667 (18)C16—H160.9500
N1—C11.4743 (18)C17—H170.9500
C1—C121.5222 (19)C18—H18A0.9800
C1—C21.5285 (19)C18—H18B0.9800
C1—H11.0000C18—H18C0.9800
C2—C71.381 (2)C19—H19A0.9800
C2—C31.408 (2)C19—H19B0.9800
C3—C41.378 (2)C19—H19C0.9800
C3—H30.9500C20—C211.505 (2)
C4—C51.412 (2)C20—H20A0.9900
C5—C61.375 (2)C20—H20B0.9900
C6—C71.402 (2)C21—C221.384 (2)
C6—H60.9500C21—C261.387 (2)
C7—C81.506 (2)C22—C231.381 (3)
C8—C91.521 (2)C22—H220.9500
C8—H8A0.9900C23—C241.374 (3)
C8—H8B0.9900C23—H230.9500
C9—C101.525 (2)C24—C251.369 (3)
C9—H91.0000C24—H240.9500
C11—H11A0.9800C25—C261.385 (3)
C11—H11B0.9800C25—H250.9500
C11—H11C0.9800C26—H260.9500
C12—C131.386 (2)
C4—O1—C18117.43 (12)C17—C12—C1119.97 (13)
C5—O2—C19116.91 (12)C12—C13—C14120.24 (14)
C10—O4—C11116.59 (16)C12—C13—H13119.9
C9—N1—C20111.85 (11)C14—C13—H13119.9
C9—N1—C1116.21 (11)C15—C14—C13120.45 (15)
C20—N1—C1113.54 (11)C15—C14—H14119.8
N1—C1—C12108.07 (11)C13—C14—H14119.8
N1—C1—C2111.52 (11)C14—C15—C16119.39 (14)
C12—C1—C2111.33 (11)C14—C15—H15120.3
N1—C1—H1108.6C16—C15—H15120.3
C12—C1—H1108.6C17—C16—C15120.36 (14)
C2—C1—H1108.6C17—C16—H16119.8
C7—C2—C3119.04 (13)C15—C16—H16119.8
C7—C2—C1122.20 (12)C16—C17—C12120.60 (15)
C3—C2—C1118.73 (13)C16—C17—H17119.7
C4—C3—C2121.22 (14)C12—C17—H17119.7
C4—C3—H3119.4O1—C18—H18A109.5
C2—C3—H3119.4O1—C18—H18B109.5
O1—C4—C3125.46 (14)H18A—C18—H18B109.5
O1—C4—C5115.04 (12)O1—C18—H18C109.5
C3—C4—C5119.50 (13)H18A—C18—H18C109.5
O2—C5—C6125.15 (14)H18B—C18—H18C109.5
O2—C5—C4115.76 (13)O2—C19—H19A109.5
C6—C5—C4119.09 (13)O2—C19—H19B109.5
C5—C6—C7121.42 (14)H19A—C19—H19B109.5
C5—C6—H6119.3O2—C19—H19C109.5
C7—C6—H6119.3H19A—C19—H19C109.5
C2—C7—C6119.71 (13)H19B—C19—H19C109.5
C2—C7—C8120.93 (12)N1—C20—C21110.54 (12)
C6—C7—C8119.36 (13)N1—C20—H20A109.5
C7—C8—C9112.16 (12)C21—C20—H20A109.5
C7—C8—H8A109.2N1—C20—H20B109.5
C9—C8—H8A109.2C21—C20—H20B109.5
C7—C8—H8B109.2H20A—C20—H20B108.1
C9—C8—H8B109.2C22—C21—C26118.49 (15)
H8A—C8—H8B107.9C22—C21—C20121.50 (15)
N1—C9—C8109.50 (12)C26—C21—C20119.94 (15)
N1—C9—C10115.01 (12)C23—C22—C21120.77 (17)
C8—C9—C10112.26 (12)C23—C22—H22119.6
N1—C9—H9106.5C21—C22—H22119.6
C8—C9—H9106.5C24—C23—C22120.14 (18)
C10—C9—H9106.5C24—C23—H23119.9
O3—C10—O4123.72 (15)C22—C23—H23119.9
O3—C10—C9126.64 (14)C25—C24—C23119.84 (18)
O4—C10—C9109.64 (13)C25—C24—H24120.1
O4—C11—H11A109.5C23—C24—H24120.1
O4—C11—H11B109.5C24—C25—C26120.33 (18)
H11A—C11—H11B109.5C24—C25—H25119.8
O4—C11—H11C109.5C26—C25—H25119.8
H11A—C11—H11C109.5C25—C26—C21120.42 (17)
H11B—C11—H11C109.5C25—C26—H26119.8
C13—C12—C17118.96 (13)C21—C26—H26119.8
C13—C12—C1121.05 (13)
C9—N1—C1—C12163.45 (12)C1—N1—C9—C1065.95 (16)
C20—N1—C1—C12−64.73 (15)C7—C8—C9—N149.38 (16)
C9—N1—C1—C240.77 (16)C7—C8—C9—C10−79.63 (15)
C20—N1—C1—C2172.59 (11)C11—O4—C10—O33.4 (2)
N1—C1—C2—C7−10.29 (17)C11—O4—C10—C9−177.57 (15)
C12—C1—C2—C7−131.08 (14)N1—C9—C10—O3−28.2 (2)
N1—C1—C2—C3171.92 (11)C8—C9—C10—O397.86 (18)
C12—C1—C2—C351.13 (17)N1—C9—C10—O4152.77 (13)
C7—C2—C3—C4−0.7 (2)C8—C9—C10—O4−81.16 (15)
C1—C2—C3—C4177.19 (12)N1—C1—C12—C13125.53 (14)
C18—O1—C4—C30.9 (2)C2—C1—C12—C13−111.68 (14)
C18—O1—C4—C5−177.87 (13)N1—C1—C12—C17−53.04 (16)
C2—C3—C4—O1−178.91 (14)C2—C1—C12—C1769.75 (16)
C2—C3—C4—C5−0.1 (2)C17—C12—C13—C140.0 (2)
C19—O2—C5—C6−12.4 (2)C1—C12—C13—C14−178.56 (13)
C19—O2—C5—C4167.07 (13)C12—C13—C14—C15−0.1 (2)
O1—C4—C5—O20.83 (18)C13—C14—C15—C160.1 (2)
C3—C4—C5—O2−178.07 (12)C14—C15—C16—C170.1 (2)
O1—C4—C5—C6−179.67 (13)C15—C16—C17—C12−0.2 (2)
C3—C4—C5—C61.4 (2)C13—C12—C17—C160.2 (2)
O2—C5—C6—C7177.51 (12)C1—C12—C17—C16178.75 (14)
C4—C5—C6—C7−1.9 (2)C9—N1—C20—C21−64.04 (15)
C3—C2—C7—C60.19 (19)C1—N1—C20—C21162.04 (12)
C1—C2—C7—C6−177.59 (12)N1—C20—C21—C22115.75 (16)
C3—C2—C7—C8−179.65 (13)N1—C20—C21—C26−61.09 (19)
C1—C2—C7—C82.57 (19)C26—C21—C22—C230.5 (3)
C5—C6—C7—C21.1 (2)C20—C21—C22—C23−176.41 (16)
C5—C6—C7—C8−179.02 (13)C21—C22—C23—C240.7 (3)
C2—C7—C8—C9−22.20 (18)C22—C23—C24—C25−1.2 (3)
C6—C7—C8—C9157.96 (12)C23—C24—C25—C260.6 (3)
C20—N1—C9—C8165.87 (12)C24—C25—C26—C210.6 (3)
C1—N1—C9—C8−61.53 (16)C22—C21—C26—C25−1.1 (3)
C20—N1—C9—C10−66.65 (15)C20—C21—C26—C25175.85 (17)
D—H···AD—HH···AD···AD—H···A
C19—H19A···Cgi0.982.823.639 (2)148
Table 1

C—H⋯π interaction (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C19—H19ACg i 0.982.823.639 (2)148

Symmetry code: (i) . Cg is the centroid of the C21–C26 ring.

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  5 in total

1.  {(1R,3S)-2-Benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl}diphenyl-methanol.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-17

2.  (1R,3S)-Methyl 6,7-dimeth-oxy-1-(4-meth-oxy-phen-yl)-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06

3.  [(1R,3S)-6,7-Dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl]methanol 2.33-hydrate.

Authors:  Sai Kumar Chakka; Michael G McKay; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23

4.  (3S)-2-Benzyl-3-carb-oxy-1,2,3,4-tetra-hydro-isoquinolinium chloride monohydrate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

5.  (1S,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
  5 in total

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