Literature DB >> 21522445

[(1R,3S)-6,7-Dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl]methanol 2.33-hydrate.

Sai Kumar Chakka, Michael G McKay, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

The title compound, C(18)H(21)NO(3)·2.33H(2)O, is the fourth reported member in a series of (1R,3S)-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline derivatives used in catalysis as ligands (or their precursors). The N-heterocycle in the structure adopts a half-chair conformation. The dihedral angle between the benzene rings is 77.29 (13)°. There are three ill-resolved water molecules of crystallization in the structure (one of them rotationally disordered about a threefold axis) involved in short contacts probably due to hydrogen bonding.

Entities:  

Year:  2011        PMID: 21522445      PMCID: PMC3052049          DOI: 10.1107/S1600536811006052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the ligand, see: Chakka et al. (2009 ▶). For the Henry reaction, see: Kawthekar et al. (2010 ▶). For similar structures, see: Naicker et al. (2009 ▶, 2010a ▶,b ▶); Chakka et al. (2010 ▶).

Experimental

Crystal data

C18H21NO3·2.33H2O M = 341.39 Trigonal, a = 27.950 (2) Å c = 5.8035 (5) Å V = 3926 (2) Å3 Z = 9 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.13 × 0.12 × 0.09 mm

Data collection

Bruker Kappa DUO APEXII CCD diffractometer 10224 measured reflections 4340 independent reflections 3707 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.162 S = 1.06 4340 reflections 226 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006052/bg2388sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006052/bg2388Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21NO3·2.33H2ODx = 1.299 Mg m3
Mr = 341.39Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 10224 reflections
Hall symbol: R 3θ = 2.5–28.3°
a = 27.950 (2) ŵ = 0.10 mm1
c = 5.8035 (5) ÅT = 173 K
V = 3926 (2) Å3Needle, colourless
Z = 90.13 × 0.12 × 0.09 mm
F(000) = 1650
Bruker Kappa DUO APEXII CCD diffractometer3707 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
graphiteθmax = 28.3°, θmin = 2.5°
0.5° φ scans and ωh = −37→37
10224 measured reflectionsk = −31→37
4340 independent reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0985P)2 + 2.1271P] where P = (Fo2 + 2Fc2)/3
4340 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.60 e Å3
3 restraintsΔρmin = −0.30 e Å3
Experimental. Half sphere of data collected using SAINT strategy (Bruker, 2006). Crystal to detector distance = 50 mm; combination of φ and ω scans of 0.5°, 60 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.91196 (8)0.15356 (9)0.2897 (4)0.0468 (5)
O20.95248 (8)0.22297 (9)0.6202 (3)0.0484 (5)
O30.67745 (12)0.27007 (15)0.4378 (6)0.0809 (9)
H3O0.675 (2)0.287 (2)0.291 (5)0.097*
O1W0.66670.33330.0620 (11)0.0959 (17)*
O2W0.82161 (9)0.36012 (8)0.0053 (3)0.0477 (5)
O3W0.76609 (13)0.41438 (12)−0.0962 (6)0.0806 (8)
N10.75539 (10)0.24710 (8)0.1792 (4)0.0370 (5)
H1N0.7216 (8)0.2411 (13)0.108 (5)0.043*
C10.76741 (9)0.20211 (9)0.1292 (4)0.0285 (4)
H10.77850.2059−0.03660.034*
C20.81654 (9)0.20906 (9)0.2690 (4)0.0299 (4)
C30.84111 (9)0.17779 (10)0.2090 (4)0.0327 (5)
H30.82700.15290.08250.039*
C40.88544 (10)0.18267 (10)0.3311 (4)0.0348 (5)
C50.90748 (11)0.22030 (11)0.5167 (4)0.0369 (5)
C60.88280 (12)0.25024 (10)0.5776 (4)0.0375 (5)
H60.89690.27490.70450.045*
C70.83662 (10)0.24501 (9)0.4548 (4)0.0314 (5)
C80.81126 (12)0.27861 (10)0.5265 (4)0.0399 (6)
H8A0.83460.31710.47220.048*
H8B0.80960.27930.69680.048*
C90.75403 (13)0.25544 (11)0.4300 (4)0.0411 (6)
H90.72870.21930.50580.049*
C100.73288 (16)0.29565 (15)0.4714 (7)0.0594 (8)
H10A0.74170.31000.63100.071*
H10B0.75160.32740.36460.071*
C110.71644 (9)0.14513 (9)0.1564 (4)0.0280 (4)
C120.70780 (10)0.11199 (10)0.3506 (4)0.0337 (5)
H120.73430.12520.47150.040*
C130.66148 (12)0.06060 (11)0.3683 (5)0.0433 (6)
H130.65620.03870.50130.052*
C140.62243 (11)0.04056 (11)0.1934 (6)0.0463 (7)
H140.59090.00470.20510.056*
C150.62937 (11)0.07295 (11)0.0015 (5)0.0451 (6)
H150.60240.0597−0.11750.054*
C160.67646 (10)0.12540 (10)−0.0156 (4)0.0374 (5)
H160.68110.1478−0.14640.045*
C170.88839 (12)0.11055 (14)0.1231 (6)0.0509 (7)
H17A0.91120.09310.10980.076*
H17B0.88680.1260−0.02640.076*
H17C0.85100.08290.17110.076*
C180.97424 (13)0.25805 (14)0.8174 (5)0.0533 (8)
H18A1.00640.25660.87590.080*
H18B0.94580.24550.93750.080*
H18C0.98540.29610.77380.080*
U11U22U33U12U13U23
O10.0351 (10)0.0572 (12)0.0562 (11)0.0292 (9)−0.0095 (8)−0.0163 (9)
O20.0420 (10)0.0542 (12)0.0480 (11)0.0233 (9)−0.0183 (8)−0.0117 (9)
O30.0626 (17)0.092 (2)0.095 (2)0.0430 (15)−0.0005 (15)−0.0043 (17)
O2W0.0541 (12)0.0409 (10)0.0489 (11)0.0243 (9)0.0054 (9)0.0036 (8)
O3W0.0695 (17)0.0625 (16)0.115 (2)0.0372 (14)−0.0191 (16)−0.0032 (15)
N10.0478 (12)0.0286 (10)0.0405 (11)0.0235 (9)−0.0004 (9)0.0020 (8)
C10.0311 (11)0.0278 (10)0.0258 (9)0.0141 (9)0.0038 (8)0.0054 (8)
C20.0331 (11)0.0253 (10)0.0273 (10)0.0117 (9)0.0072 (8)0.0055 (8)
C30.0296 (11)0.0341 (11)0.0305 (11)0.0130 (9)0.0028 (8)−0.0035 (8)
C40.0294 (11)0.0373 (12)0.0332 (11)0.0131 (10)0.0024 (9)−0.0009 (9)
C50.0372 (12)0.0357 (12)0.0328 (11)0.0143 (10)−0.0036 (9)0.0022 (9)
C60.0500 (14)0.0312 (11)0.0271 (10)0.0170 (11)−0.0019 (10)−0.0004 (9)
C70.0410 (12)0.0218 (10)0.0298 (10)0.0145 (9)0.0017 (9)0.0031 (8)
C80.0631 (17)0.0325 (12)0.0303 (11)0.0284 (12)−0.0007 (11)−0.0016 (9)
C90.0557 (16)0.0351 (12)0.0414 (13)0.0295 (12)0.0118 (11)0.0061 (10)
C100.063 (2)0.0548 (18)0.072 (2)0.0387 (17)0.0177 (16)0.0012 (15)
C110.0309 (11)0.0252 (10)0.0307 (10)0.0162 (9)0.0070 (8)0.0024 (8)
C120.0377 (12)0.0328 (11)0.0374 (12)0.0227 (10)0.0091 (9)0.0091 (9)
C130.0474 (14)0.0320 (12)0.0557 (15)0.0237 (11)0.0239 (12)0.0150 (11)
C140.0347 (13)0.0298 (12)0.0675 (18)0.0108 (10)0.0190 (13)−0.0014 (11)
C150.0336 (12)0.0370 (13)0.0546 (16)0.0101 (11)0.0033 (11)−0.0077 (11)
C160.0375 (12)0.0350 (12)0.0374 (12)0.0165 (10)0.0038 (10)0.0016 (10)
C170.0382 (14)0.0600 (17)0.0640 (19)0.0317 (14)−0.0060 (12)−0.0230 (14)
C180.0462 (16)0.0548 (17)0.0419 (14)0.0126 (13)−0.0158 (12)−0.0037 (12)
O1—C41.368 (3)C8—H8B0.9900
O1—C171.422 (3)C9—C101.528 (4)
O2—C51.362 (3)C9—H91.0000
O2—C181.430 (3)C10—H10A0.9900
O3—C101.357 (5)C10—H10B0.9900
O3—H3O0.99 (4)C11—C161.390 (3)
N1—C91.477 (3)C11—C121.401 (3)
N1—C11.484 (3)C12—C131.375 (4)
N1—H1N0.97 (3)C12—H120.9500
C1—C21.521 (3)C13—C141.387 (5)
C1—C111.524 (3)C13—H130.9500
C1—H11.0000C14—C151.386 (4)
C2—C71.387 (3)C14—H140.9500
C2—C31.399 (3)C15—C161.401 (4)
C3—C41.374 (3)C15—H150.9500
C3—H30.9500C16—H160.9500
C4—C51.414 (3)C17—H17A0.9800
C5—C61.370 (4)C17—H17B0.9800
C6—C71.417 (4)C17—H17C0.9800
C6—H60.9500C18—H18A0.9800
C7—C81.491 (3)C18—H18B0.9800
C8—C91.502 (4)C18—H18C0.9800
C8—H8A0.9900
C4—O1—C17117.5 (2)N1—C9—H9109.6
C5—O2—C18117.1 (2)C8—C9—H9109.6
C10—O3—H3O102 (3)C10—C9—H9109.6
C9—N1—C1111.16 (18)O3—C10—C9110.5 (3)
C9—N1—H1N110 (2)O3—C10—H10A109.6
C1—N1—H1N112.6 (19)C9—C10—H10A109.6
N1—C1—C2111.10 (19)O3—C10—H10B109.6
N1—C1—C11112.09 (18)C9—C10—H10B109.6
C2—C1—C11113.00 (17)H10A—C10—H10B108.1
N1—C1—H1106.7C16—C11—C12118.5 (2)
C2—C1—H1106.7C16—C11—C1119.09 (19)
C11—C1—H1106.7C12—C11—C1122.4 (2)
C7—C2—C3119.9 (2)C13—C12—C11120.8 (3)
C7—C2—C1121.3 (2)C13—C12—H12119.6
C3—C2—C1118.74 (19)C11—C12—H12119.6
C4—C3—C2120.6 (2)C12—C13—C14120.5 (2)
C4—C3—H3119.7C12—C13—H13119.8
C2—C3—H3119.7C14—C13—H13119.8
O1—C4—C3125.5 (2)C15—C14—C13120.0 (2)
O1—C4—C5114.3 (2)C15—C14—H14120.0
C3—C4—C5120.2 (2)C13—C14—H14120.0
O2—C5—C6125.9 (2)C14—C15—C16119.5 (3)
O2—C5—C4115.1 (2)C14—C15—H15120.3
C6—C5—C4119.1 (2)C16—C15—H15120.3
C5—C6—C7121.2 (2)C11—C16—C15120.8 (2)
C5—C6—H6119.4C11—C16—H16119.6
C7—C6—H6119.4C15—C16—H16119.6
C2—C7—C6118.9 (2)O1—C17—H17A109.5
C2—C7—C8121.7 (2)O1—C17—H17B109.5
C6—C7—C8119.4 (2)H17A—C17—H17B109.5
C7—C8—C9111.3 (2)O1—C17—H17C109.5
C7—C8—H8A109.4H17A—C17—H17C109.5
C9—C8—H8A109.4H17B—C17—H17C109.5
C7—C8—H8B109.4O2—C18—H18A109.5
C9—C8—H8B109.4O2—C18—H18B109.5
H8A—C8—H8B108.0H18A—C18—H18B109.5
N1—C9—C8109.2 (2)O2—C18—H18C109.5
N1—C9—C10108.7 (2)H18A—C18—H18C109.5
C8—C9—C10110.2 (2)H18B—C18—H18C109.5
C9—N1—C1—C2−48.0 (3)C1—C2—C7—C8−0.1 (3)
C9—N1—C1—C1179.5 (3)C5—C6—C7—C2−0.4 (3)
N1—C1—C2—C714.4 (3)C5—C6—C7—C8−179.7 (2)
C11—C1—C2—C7−112.6 (2)C2—C7—C8—C918.5 (3)
N1—C1—C2—C3−166.43 (19)C6—C7—C8—C9−162.2 (2)
C11—C1—C2—C366.6 (3)C1—N1—C9—C868.4 (2)
C7—C2—C3—C4−0.6 (3)C1—N1—C9—C10−171.4 (2)
C1—C2—C3—C4−179.8 (2)C7—C8—C9—N1−51.1 (3)
C17—O1—C4—C3−7.1 (4)C7—C8—C9—C10−170.5 (2)
C17—O1—C4—C5173.1 (3)N1—C9—C10—O375.4 (3)
C2—C3—C4—O1178.9 (2)C8—C9—C10—O3−165.0 (3)
C2—C3—C4—C5−1.2 (4)N1—C1—C11—C1676.9 (3)
C18—O2—C5—C63.4 (4)C2—C1—C11—C16−156.7 (2)
C18—O2—C5—C4−176.4 (2)N1—C1—C11—C12−102.1 (2)
O1—C4—C5—O22.0 (3)C2—C1—C11—C1224.3 (3)
C3—C4—C5—O2−177.9 (2)C16—C11—C12—C131.5 (3)
O1—C4—C5—C6−177.9 (2)C1—C11—C12—C13−179.5 (2)
C3—C4—C5—C62.3 (4)C11—C12—C13—C140.1 (4)
O2—C5—C6—C7178.7 (2)C12—C13—C14—C15−1.5 (4)
C4—C5—C6—C7−1.5 (4)C13—C14—C15—C161.2 (4)
C3—C2—C7—C61.4 (3)C12—C11—C16—C15−1.8 (4)
C1—C2—C7—C6−179.4 (2)C1—C11—C16—C15179.2 (2)
C3—C2—C7—C8−179.2 (2)C14—C15—C16—C110.5 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O1W0.99 (4)1.95 (4)2.917 (6)164 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O1W0.99 (4)1.95 (4)2.917 (6)164 (5)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  {(1R,3S)-2-Benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl}diphenyl-methanol.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-17

3.  (1R,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Michael McKay; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

4.  (1R,3S)-Methyl 6,7-dimeth-oxy-1-(4-meth-oxy-phen-yl)-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06

5.  (R)-4-Phenyl-2-[(S)-1,2,3,4-tetra-hydro-isoquinolin-3-yl]-4,5-dihydro-1,3-oxazole.

Authors:  Sai K Chakka; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.