Literature DB >> 21754788

(1S,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Tricia Naicker, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

In the title compound, C(26)H(27)NO(4), the heterocyclic ring assumes a half-chair conformation and inter-molecular C-H⋯O inter-actions help to construct the three-dimensional network within the crystal packing.

Entities:  

Year:  2011        PMID: 21754788      PMCID: PMC3120496          DOI: 10.1107/S1600536811017430

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a precursor to chiral catalysts bearing a tetra­hydro­isoquinoline (TIQ) backbone. TIQ catalyst precursors have shown to be efficient for several asymmetric transformations, see: Chakka et al. (2010 ▶); Kawthekar et al. (2010 ▶). For related structures, see: Naicker et al. (2009 ▶, 2010 ▶, 2011 ▶). For the assignment of the absolute stereochemisty by NMR, see: Aubry et al. (2006 ▶).

Experimental

Crystal data

C26H27NO4 M = 417.49 Monoclinic, a = 9.7797 (7) Å b = 5.4646 (4) Å c = 20.6959 (15) Å β = 96.986 (1)° V = 1097.82 (14) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.85 × 0.07 × 0.06 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.931, T max = 0.995 20624 measured reflections 3032 independent reflections 2764 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.087 S = 1.05 3032 reflections 280 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017430/gw2101sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017430/gw2101Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H27NO4F(000) = 444
Mr = 417.49Dx = 1.263 Mg m3
Monoclinic, P21Melting point: 420 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 9.7797 (7) ÅCell parameters from 20624 reflections
b = 5.4646 (4) Åθ = 2.0–28.4°
c = 20.6959 (15) ŵ = 0.09 mm1
β = 96.986 (1)°T = 173 K
V = 1097.82 (14) Å3Needle, yellow
Z = 20.85 × 0.07 × 0.06 mm
Bruker Kappa DUO APEXII diffractometer3032 independent reflections
Radiation source: fine-focus sealed tube2764 reflections with I > 2σ(I)
graphiteRint = 0.030
0.5° φ scans and ωθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −13→13
Tmin = 0.931, Tmax = 0.995k = −7→7
20624 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0488P)2 + 0.1593P] where P = (Fo2 + 2Fc2)/3
3032 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.19 e Å3
Experimental. Half sphere of data collected using the Bruker SAINT software package. Crystal to detector distance = 30 mm; combination of φ and ω scans of 0.5°, 50 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59208 (12)0.2130 (3)0.07345 (6)0.0400 (3)
O20.53131 (12)−0.1159 (3)0.15604 (6)0.0370 (3)
O31.13983 (13)0.2008 (3)0.41963 (6)0.0382 (3)
O41.06894 (12)0.5827 (3)0.43713 (6)0.0371 (3)
N11.07939 (12)0.4482 (3)0.28290 (6)0.0250 (3)
C10.99153 (14)0.5106 (3)0.22148 (7)0.0248 (3)
H10.95720.68190.22520.030*
C20.86750 (14)0.3416 (3)0.20811 (7)0.0241 (3)
C30.78789 (15)0.3561 (3)0.14696 (7)0.0290 (3)
H30.81170.47130.11580.035*
C40.67576 (15)0.2054 (4)0.13156 (7)0.0290 (3)
C50.64159 (15)0.0305 (3)0.17670 (7)0.0278 (3)
C60.71774 (15)0.0206 (3)0.23736 (7)0.0261 (3)
H60.6943−0.09530.26840.031*
C70.82981 (14)0.1801 (3)0.25388 (7)0.0238 (3)
C80.90596 (15)0.1782 (3)0.32152 (7)0.0262 (3)
H8A0.96730.03360.32670.031*
H8B0.83900.16470.35360.031*
C90.99109 (14)0.4091 (3)0.33493 (7)0.0246 (3)
H90.92780.55230.33640.030*
C101.07737 (14)0.3815 (4)0.40099 (7)0.0279 (3)
C111.1481 (2)0.5762 (5)0.50083 (9)0.0495 (5)
H11A1.13570.73030.52360.074*
H11B1.24590.55410.49610.074*
H11C1.11650.43970.52590.074*
C121.17749 (15)0.6521 (3)0.29833 (8)0.0291 (3)
H12A1.13100.78080.32130.035*
H12B1.19980.72340.25690.035*
C131.31095 (14)0.5860 (3)0.33944 (7)0.0270 (3)
C141.38533 (17)0.3781 (4)0.32668 (9)0.0355 (4)
H141.34780.26470.29450.043*
C151.51460 (19)0.3358 (4)0.36092 (11)0.0469 (5)
H151.56560.19480.35160.056*
C161.56899 (19)0.4983 (5)0.40837 (11)0.0501 (5)
H161.65730.46910.43170.060*
C171.4954 (2)0.7017 (5)0.42181 (10)0.0482 (5)
H171.53250.81250.45470.058*
C181.36621 (17)0.7465 (4)0.38741 (9)0.0369 (4)
H181.31580.88790.39690.044*
C191.07526 (15)0.4993 (3)0.16403 (8)0.0280 (3)
C201.16294 (16)0.3043 (3)0.15664 (8)0.0322 (4)
H201.17610.18140.18930.039*
C211.23198 (19)0.2875 (4)0.10159 (9)0.0409 (4)
H211.29370.15580.09730.049*
C221.2103 (2)0.4635 (5)0.05320 (10)0.0481 (5)
H221.25560.45040.01520.058*
C231.1231 (2)0.6574 (5)0.06006 (10)0.0489 (5)
H231.10790.77720.02670.059*
C241.05718 (18)0.6783 (4)0.11589 (9)0.0380 (4)
H240.99970.81530.12110.046*
C250.60475 (19)0.4241 (4)0.03433 (8)0.0400 (4)
H25A0.54090.4110−0.00590.060*
H25B0.69940.43610.02360.060*
H25C0.58270.57050.05840.060*
C260.4896 (2)−0.2845 (4)0.20218 (9)0.0442 (5)
H26A0.4106−0.37920.18210.066*
H26B0.4636−0.19480.23980.066*
H26C0.5660−0.39570.21640.066*
U11U22U33U12U13U23
O10.0368 (6)0.0521 (9)0.0288 (5)−0.0133 (7)−0.0052 (4)0.0025 (6)
O20.0323 (6)0.0430 (8)0.0351 (6)−0.0161 (6)0.0015 (5)−0.0048 (6)
O30.0354 (6)0.0417 (8)0.0358 (6)0.0060 (6)−0.0023 (5)0.0019 (6)
O40.0308 (6)0.0452 (8)0.0345 (6)0.0012 (6)0.0007 (5)−0.0165 (6)
N10.0212 (5)0.0238 (7)0.0298 (6)−0.0033 (5)0.0022 (4)−0.0016 (5)
C10.0225 (6)0.0217 (7)0.0303 (7)−0.0023 (6)0.0035 (5)−0.0001 (6)
C20.0204 (6)0.0245 (8)0.0276 (7)−0.0022 (6)0.0039 (5)−0.0023 (6)
C30.0267 (6)0.0321 (9)0.0283 (7)−0.0059 (7)0.0041 (5)0.0028 (7)
C40.0247 (6)0.0364 (9)0.0257 (7)−0.0032 (7)0.0018 (5)−0.0022 (7)
C50.0232 (6)0.0307 (9)0.0301 (7)−0.0066 (6)0.0059 (5)−0.0064 (7)
C60.0251 (6)0.0262 (8)0.0281 (7)−0.0040 (6)0.0072 (5)−0.0010 (6)
C70.0213 (6)0.0250 (7)0.0257 (6)−0.0006 (6)0.0046 (5)−0.0027 (6)
C80.0241 (6)0.0280 (8)0.0265 (6)−0.0014 (6)0.0030 (5)0.0002 (7)
C90.0211 (6)0.0251 (8)0.0272 (6)0.0028 (6)0.0012 (5)−0.0044 (6)
C100.0211 (6)0.0339 (9)0.0291 (7)−0.0001 (6)0.0046 (5)−0.0046 (7)
C110.0402 (9)0.0716 (16)0.0348 (9)−0.0054 (11)−0.0031 (7)−0.0192 (11)
C120.0232 (7)0.0226 (8)0.0403 (8)−0.0013 (6)−0.0003 (6)−0.0016 (7)
C130.0211 (6)0.0266 (8)0.0338 (7)−0.0012 (6)0.0054 (5)0.0013 (7)
C140.0328 (8)0.0311 (9)0.0430 (9)0.0040 (7)0.0056 (7)−0.0025 (8)
C150.0338 (9)0.0422 (12)0.0649 (13)0.0124 (9)0.0070 (8)0.0056 (10)
C160.0280 (8)0.0554 (13)0.0630 (12)0.0030 (9)−0.0095 (8)0.0129 (11)
C170.0363 (9)0.0501 (13)0.0539 (11)−0.0081 (10)−0.0119 (8)−0.0049 (11)
C180.0279 (7)0.0333 (10)0.0481 (9)−0.0010 (7)−0.0003 (7)−0.0072 (8)
C190.0240 (7)0.0270 (8)0.0332 (7)−0.0086 (6)0.0047 (5)−0.0008 (7)
C200.0303 (7)0.0307 (9)0.0360 (8)−0.0057 (7)0.0059 (6)−0.0047 (7)
C210.0372 (9)0.0410 (11)0.0464 (10)−0.0078 (8)0.0129 (7)−0.0133 (9)
C220.0468 (10)0.0592 (14)0.0421 (9)−0.0157 (11)0.0204 (8)−0.0061 (10)
C230.0505 (11)0.0531 (14)0.0451 (10)−0.0139 (10)0.0135 (8)0.0131 (10)
C240.0352 (8)0.0349 (10)0.0448 (9)−0.0070 (8)0.0085 (7)0.0067 (8)
C250.0412 (9)0.0465 (11)0.0308 (8)0.0035 (9)−0.0019 (7)0.0022 (9)
C260.0437 (9)0.0465 (12)0.0438 (9)−0.0241 (10)0.0108 (7)−0.0077 (10)
O1—C41.3705 (17)C12—H12A0.9900
O1—C251.423 (3)C12—H12B0.9900
O2—C51.3688 (18)C13—C181.384 (2)
O2—C261.422 (2)C13—C141.391 (2)
O3—C101.200 (2)C14—C151.391 (3)
O4—C101.338 (2)C14—H140.9500
O4—C111.446 (2)C15—C161.382 (3)
N1—C91.4755 (18)C15—H150.9500
N1—C121.480 (2)C16—C171.371 (3)
N1—C11.4849 (18)C16—H160.9500
C1—C21.523 (2)C17—C181.394 (2)
C1—C191.525 (2)C17—H170.9500
C1—H11.0000C18—H180.9500
C2—C71.378 (2)C19—C201.388 (2)
C2—C31.405 (2)C19—C241.392 (3)
C3—C41.377 (2)C20—C211.396 (2)
C3—H30.9500C20—H200.9500
C4—C51.405 (2)C21—C221.386 (3)
C5—C61.381 (2)C21—H210.9500
C6—C71.409 (2)C22—C231.378 (4)
C6—H60.9500C22—H220.9500
C7—C81.5035 (19)C23—C241.395 (3)
C8—C91.519 (2)C23—H230.9500
C8—H8A0.9900C24—H240.9500
C8—H8B0.9900C25—H25A0.9800
C9—C101.524 (2)C25—H25B0.9800
C9—H91.0000C25—H25C0.9800
C11—H11A0.9800C26—H26A0.9800
C11—H11B0.9800C26—H26B0.9800
C11—H11C0.9800C26—H26C0.9800
C12—C131.513 (2)
C4—O1—C25116.09 (14)C13—C12—H12A108.4
C5—O2—C26116.63 (13)N1—C12—H12B108.4
C10—O4—C11115.28 (16)C13—C12—H12B108.4
C9—N1—C12111.91 (12)H12A—C12—H12B107.4
C9—N1—C1109.20 (11)C18—C13—C14119.07 (15)
C12—N1—C1107.71 (12)C18—C13—C12119.12 (16)
N1—C1—C2112.42 (12)C14—C13—C12121.58 (15)
N1—C1—C19110.39 (11)C15—C14—C13120.17 (18)
C2—C1—C19108.97 (12)C15—C14—H14119.9
N1—C1—H1108.3C13—C14—H14119.9
C2—C1—H1108.3C16—C15—C14120.2 (2)
C19—C1—H1108.3C16—C15—H15119.9
C7—C2—C3119.35 (13)C14—C15—H15119.9
C7—C2—C1122.51 (13)C17—C16—C15119.92 (17)
C3—C2—C1118.13 (13)C17—C16—H16120.0
C4—C3—C2120.88 (15)C15—C16—H16120.0
C4—C3—H3119.6C16—C17—C18120.29 (19)
C2—C3—H3119.6C16—C17—H17119.9
O1—C4—C3123.96 (15)C18—C17—H17119.9
O1—C4—C5116.04 (14)C13—C18—C17120.35 (19)
C3—C4—C5119.99 (13)C13—C18—H18119.8
O2—C5—C6125.36 (15)C17—C18—H18119.8
O2—C5—C4115.59 (13)C20—C19—C24119.15 (15)
C6—C5—C4119.04 (14)C20—C19—C1121.00 (15)
C5—C6—C7120.93 (14)C24—C19—C1119.72 (16)
C5—C6—H6119.5C19—C20—C21120.48 (18)
C7—C6—H6119.5C19—C20—H20119.8
C2—C7—C6119.65 (13)C21—C20—H20119.8
C2—C7—C8120.07 (13)C22—C21—C20119.81 (19)
C6—C7—C8120.27 (13)C22—C21—H21120.1
C7—C8—C9111.28 (13)C20—C21—H21120.1
C7—C8—H8A109.4C23—C22—C21120.08 (17)
C9—C8—H8A109.4C23—C22—H22120.0
C7—C8—H8B109.4C21—C22—H22120.0
C9—C8—H8B109.4C22—C23—C24120.2 (2)
H8A—C8—H8B108.0C22—C23—H23119.9
N1—C9—C8110.08 (12)C24—C23—H23119.9
N1—C9—C10111.08 (11)C19—C24—C23120.3 (2)
C8—C9—C10108.24 (14)C19—C24—H24119.9
N1—C9—H9109.1C23—C24—H24119.9
C8—C9—H9109.1O1—C25—H25A109.5
C10—C9—H9109.1O1—C25—H25B109.5
O3—C10—O4124.06 (14)H25A—C25—H25B109.5
O3—C10—C9125.08 (16)O1—C25—H25C109.5
O4—C10—C9110.79 (14)H25A—C25—H25C109.5
O4—C11—H11A109.5H25B—C25—H25C109.5
O4—C11—H11B109.5O2—C26—H26A109.5
H11A—C11—H11B109.5O2—C26—H26B109.5
O4—C11—H11C109.5H26A—C26—H26B109.5
H11A—C11—H11C109.5O2—C26—H26C109.5
H11B—C11—H11C109.5H26A—C26—H26C109.5
N1—C12—C13115.70 (14)H26B—C26—H26C109.5
N1—C12—H12A108.4
C9—N1—C1—C2−46.18 (17)C1—N1—C9—C10−171.68 (14)
C12—N1—C1—C2−167.91 (12)C7—C8—C9—N1−52.11 (16)
C9—N1—C1—C19−168.08 (13)C7—C8—C9—C10−173.69 (12)
C12—N1—C1—C1970.19 (16)C11—O4—C10—O33.4 (2)
N1—C1—C2—C710.8 (2)C11—O4—C10—C9−179.57 (14)
C19—C1—C2—C7133.55 (15)N1—C9—C10—O3−76.9 (2)
N1—C1—C2—C3−170.35 (13)C8—C9—C10—O344.1 (2)
C19—C1—C2—C3−47.65 (19)N1—C9—C10—O4106.16 (15)
C7—C2—C3—C4−2.2 (2)C8—C9—C10—O4−132.88 (14)
C1—C2—C3—C4178.97 (15)C9—N1—C12—C1385.52 (16)
C25—O1—C4—C3−14.8 (2)C1—N1—C12—C13−154.45 (13)
C25—O1—C4—C5165.37 (15)N1—C12—C13—C18−140.47 (16)
C2—C3—C4—O1178.63 (16)N1—C12—C13—C1445.0 (2)
C2—C3—C4—C5−1.5 (3)C18—C13—C14—C15−1.3 (3)
C26—O2—C5—C62.6 (2)C12—C13—C14—C15173.24 (17)
C26—O2—C5—C4−176.36 (16)C13—C14—C15—C160.9 (3)
O1—C4—C5—O22.0 (2)C14—C15—C16—C170.1 (3)
C3—C4—C5—O2−177.87 (15)C15—C16—C17—C18−0.5 (3)
O1—C4—C5—C6−177.02 (15)C14—C13—C18—C170.8 (3)
C3—C4—C5—C63.1 (2)C12—C13—C18—C17−173.86 (17)
O2—C5—C6—C7180.00 (15)C16—C17—C18—C130.1 (3)
C4—C5—C6—C7−1.1 (2)N1—C1—C19—C2045.6 (2)
C3—C2—C7—C64.2 (2)C2—C1—C19—C20−78.34 (17)
C1—C2—C7—C6−177.02 (14)N1—C1—C19—C24−138.67 (15)
C3—C2—C7—C8−174.44 (14)C2—C1—C19—C2497.42 (18)
C1—C2—C7—C84.3 (2)C24—C19—C20—C21−0.1 (2)
C5—C6—C7—C2−2.6 (2)C1—C19—C20—C21175.66 (15)
C5—C6—C7—C8176.03 (14)C19—C20—C21—C22−1.6 (3)
C2—C7—C8—C916.00 (19)C20—C21—C22—C231.4 (3)
C6—C7—C8—C9−162.63 (14)C21—C22—C23—C240.5 (3)
C12—N1—C9—C8−172.39 (12)C20—C19—C24—C232.0 (3)
C1—N1—C9—C868.45 (16)C1—C19—C24—C23−173.83 (16)
C12—N1—C9—C10−52.52 (18)C22—C23—C24—C19−2.2 (3)
D—H···AD—HH···AD···AD—H···A
C18—H18···O3i0.952.513.445 (2)168
C25—H25A···O1ii0.982.433.183 (2)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18⋯O3i0.952.513.445 (2)168
C25—H25A⋯O1ii0.982.433.183 (2)133

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Optically active diaryl tetrahydroisoquinoline derivatives.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr C       Date:  2011-02-08       Impact factor: 1.172

3.  (1R,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Michael McKay; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28
  3 in total
  5 in total

1.  (1S,3S)-Methyl 6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

2.  2-[(1R,3S)-6,7-Dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl]-4-phenyl-1,3-thia-zole.

Authors:  Sunayna Pawar; Venugopala Katharigatta; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

3.  (S)-4-Phenyl-2-(1,2,3,4-tetra-hydro-isoquinolin-3-yl)-1,3-thia-zole.

Authors:  Sunayna Pawar; Pralav Bhatt; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

4.  (1R,3S)-N-Benzhydryl-2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carbothio-amide.

Authors:  Tricia Naicker; Thavendran Govender; Hendrick G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

5.  (S)-4-tert-Butyl-2-(1,2,3,4-tetra-hydro-isoquinolin-3-yl)-1,3-thia-zole.

Authors:  Sunayna Pawar; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
  5 in total

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