Literature DB >> 21522727

(3S)-2-Benzyl-3-carb-oxy-1,2,3,4-tetra-hydro-isoquinolinium chloride monohydrate.

Tricia Naicker, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

In the title compound, C(17)H(18)NO(2) (+)·Cl(-)·H(2)O, a precursor to novel asymmetric catalysts, the N-containing six-membered ring of the tetra-hydro-quinolinium unit assumes a half-boat conformation. In the crystal, inter-molecular O-H⋯O, O-H⋯Cl, N-H⋯Cl and C-H⋯O n class="Chemical">hydrogen bonds and C-H⋯π inter-actions link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21522727      PMCID: PMC3050278          DOI: 10.1107/S1600536810053122

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures of tetra­hydro­isoquinoline derivatives, see: Naicker, Petzold et al. (2010 ▶); Naicker, Govender et al. (2010 ▶, 2011 ▶); Peters et al. (2010 ▶). For related structures with the same chiral centre and conformation of the six-membered ring, see: Naicker et al. (2009 ▶); Chakka et al. (2010 ▶).

Experimental

Crystal data

C17H18NO2 +·Cl−·H2O M = 321.79 Monoclinic, a = 8.6159 (8) Å b = 10.0670 (9) Å c = 10.1392 (9) Å β = 108.686 (2)° V = 833.08 (13) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 193 K 0.30 × 0.11 × 0.02 mm

Data collection

Bruker Kappa DUO APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.931, T max = 0.995 9083 measured reflections 4158 independent reflections 3414 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.082 S = 1.04 4158 reflections 213 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1961 Friedel pairs Flack parameter: −0.01 (5) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053122/is2635sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053122/is2635Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18NO2+·Cl·H2OF(000) = 340
Mr = 321.79Dx = 1.283 Mg m3
Monoclinic, P21Melting point: 479 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 8.6159 (8) ÅCell parameters from 9083 reflections
b = 10.0670 (9) Åθ = 2.1–28.3°
c = 10.1392 (9) ŵ = 0.24 mm1
β = 108.686 (2)°T = 193 K
V = 833.08 (13) Å3Needle, colourless
Z = 20.30 × 0.11 × 0.02 mm
Bruker Kappa DUO APEXII diffractometer4158 independent reflections
Radiation source: fine-focus sealed tube3414 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008ah = −11→11
Tmin = 0.931, Tmax = 0.995k = −13→13
9083 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0365P)2 + 0.0675P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4158 reflectionsΔρmax = 0.19 e Å3
213 parametersΔρmin = −0.16 e Å3
5 restraintsAbsolute structure: Flack (1983), 1961 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (5)
Experimental. Half sphere of data collected using the Bruker SAINT software package. Crystal to detector distance = 30 mm; combination of φ and ω scans of 0.5°, 30 s per °, 2 iterations
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49392 (7)0.38386 (5)0.55522 (5)0.04878 (14)
O10.52160 (16)0.58413 (12)−0.04364 (13)0.0387 (3)
O20.6338 (2)0.76556 (14)−0.10233 (14)0.0490 (4)
H20.629 (4)0.716 (3)−0.184 (2)0.090 (9)*
O30.6423 (2)0.66136 (15)0.67265 (14)0.0555 (4)
H3A0.610 (3)0.7278 (19)0.601 (2)0.067*
H3B0.578 (3)0.5841 (17)0.634 (2)0.067*
N10.49861 (17)0.70659 (13)0.19862 (14)0.0280 (3)
H10.501 (2)0.7664 (16)0.2736 (15)0.038 (5)*
C10.6027 (2)0.59202 (17)0.27205 (18)0.0327 (4)
H1A0.56190.56000.34720.039*
H1B0.59250.51820.20520.039*
C20.7801 (2)0.62971 (17)0.33336 (17)0.0310 (4)
C30.8823 (2)0.5464 (2)0.43363 (19)0.0409 (5)
H30.83770.47100.46500.049*
C41.0477 (3)0.5725 (2)0.4878 (2)0.0483 (5)
H41.11700.51440.55500.058*
C51.1130 (2)0.6837 (2)0.4441 (2)0.0441 (5)
H51.22680.70260.48190.053*
C61.0113 (2)0.7668 (2)0.34518 (18)0.0368 (4)
H61.05640.84260.31490.044*
C70.8446 (2)0.74187 (16)0.28922 (17)0.0302 (4)
C80.7346 (2)0.83776 (17)0.18686 (17)0.0305 (4)
H8A0.79200.86860.12210.037*
H8B0.71570.91620.23850.037*
C90.5689 (2)0.77988 (16)0.10185 (16)0.0271 (3)
H90.49460.85680.06380.033*
C100.5722 (2)0.69626 (16)−0.02157 (17)0.0292 (3)
C110.3223 (2)0.66112 (18)0.1368 (2)0.0354 (4)
H11A0.32040.57560.08800.043*
H11B0.27650.64520.21330.043*
C120.2151 (2)0.75869 (18)0.03655 (19)0.0343 (4)
C130.1818 (2)0.8829 (2)0.0808 (2)0.0411 (4)
H130.22810.90740.17590.049*
C140.0813 (3)0.9713 (2)−0.0132 (3)0.0522 (6)
H140.06031.05660.01730.063*
C150.0118 (3)0.9354 (3)−0.1511 (3)0.0551 (6)
H15−0.05810.9958−0.21500.066*
C160.0432 (3)0.8130 (2)−0.1963 (2)0.0512 (5)
H16−0.00530.7886−0.29110.061*
C170.1460 (2)0.7249 (2)−0.1032 (2)0.0417 (4)
H170.16940.6408−0.13510.050*
U11U22U33U12U13U23
Cl10.0783 (4)0.0361 (2)0.0339 (2)−0.0070 (3)0.0209 (2)0.0013 (2)
O10.0530 (8)0.0247 (6)0.0402 (7)−0.0058 (6)0.0177 (6)−0.0053 (6)
O20.0828 (11)0.0376 (8)0.0353 (7)−0.0184 (7)0.0311 (7)−0.0053 (6)
O30.0928 (12)0.0438 (9)0.0322 (7)−0.0064 (8)0.0231 (8)−0.0007 (7)
N10.0354 (7)0.0231 (7)0.0269 (7)−0.0014 (6)0.0120 (6)0.0022 (6)
C10.0427 (10)0.0236 (8)0.0313 (9)−0.0004 (7)0.0111 (7)0.0065 (7)
C20.0415 (10)0.0274 (8)0.0249 (8)0.0019 (7)0.0116 (7)0.0006 (7)
C30.0514 (12)0.0373 (10)0.0329 (10)0.0028 (9)0.0121 (9)0.0067 (8)
C40.0530 (13)0.0483 (12)0.0370 (10)0.0094 (10)0.0050 (9)0.0085 (10)
C50.0384 (10)0.0502 (12)0.0391 (10)0.0028 (9)0.0061 (8)−0.0071 (9)
C60.0408 (10)0.0375 (10)0.0324 (9)−0.0053 (8)0.0119 (8)−0.0057 (8)
C70.0404 (9)0.0276 (9)0.0231 (8)0.0001 (7)0.0111 (7)−0.0032 (7)
C80.0379 (9)0.0232 (8)0.0293 (8)−0.0051 (7)0.0092 (7)−0.0001 (7)
C90.0351 (9)0.0181 (7)0.0281 (8)−0.0011 (7)0.0100 (7)0.0030 (7)
C100.0367 (9)0.0223 (8)0.0274 (8)−0.0004 (7)0.0086 (7)0.0015 (7)
C110.0369 (10)0.0309 (9)0.0406 (10)−0.0051 (8)0.0154 (8)0.0026 (8)
C120.0312 (9)0.0319 (9)0.0422 (9)−0.0031 (7)0.0150 (7)0.0035 (8)
C130.0399 (10)0.0397 (10)0.0492 (10)0.0035 (9)0.0220 (8)−0.0013 (11)
C140.0511 (13)0.0396 (11)0.0771 (16)0.0143 (10)0.0360 (12)0.0076 (11)
C150.0482 (13)0.0631 (15)0.0600 (14)0.0194 (11)0.0256 (11)0.0236 (12)
C160.0491 (12)0.0586 (14)0.0448 (12)0.0056 (10)0.0135 (10)0.0106 (11)
C170.0430 (11)0.0393 (11)0.0428 (10)−0.0021 (9)0.0138 (9)−0.0004 (9)
O1—C101.205 (2)C6—H60.9500
O2—C101.310 (2)C7—C81.509 (2)
O2—H20.961 (10)C8—C91.527 (2)
O3—H3A0.957 (10)C8—H8A0.9900
O3—H3B0.963 (10)C8—H8B0.9900
N1—C91.502 (2)C9—C101.516 (2)
N1—C11.504 (2)C9—H91.0000
N1—C111.516 (2)C11—C121.500 (3)
N1—H10.965 (9)C11—H11A0.9900
C1—C21.502 (3)C11—H11B0.9900
C1—H1A0.9900C12—C131.390 (3)
C1—H1B0.9900C12—C171.392 (3)
C2—C31.392 (2)C13—C141.386 (3)
C2—C71.394 (2)C13—H130.9500
C3—C41.379 (3)C14—C151.382 (3)
C3—H30.9500C14—H140.9500
C4—C51.388 (3)C15—C161.371 (3)
C4—H40.9500C15—H150.9500
C5—C61.382 (3)C16—C171.388 (3)
C5—H50.9500C16—H160.9500
C6—C71.388 (2)C17—H170.9500
C10—O2—H2110.4 (19)C9—C8—H8B108.7
H3A—O3—H3B106 (2)H8A—C8—H8B107.6
C9—N1—C1113.50 (13)N1—C9—C10112.63 (13)
C9—N1—C11116.00 (13)N1—C9—C8108.58 (13)
C1—N1—C11109.44 (13)C10—C9—C8114.61 (14)
C9—N1—H1107.3 (12)N1—C9—H9106.9
C1—N1—H1103.3 (12)C10—C9—H9106.9
C11—N1—H1106.2 (11)C8—C9—H9106.9
C2—C1—N1112.18 (13)O1—C10—O2125.28 (17)
C2—C1—H1A109.2O1—C10—C9124.90 (16)
N1—C1—H1A109.2O2—C10—C9109.79 (14)
C2—C1—H1B109.2C12—C11—N1113.61 (14)
N1—C1—H1B109.2C12—C11—H11A108.8
H1A—C1—H1B107.9N1—C11—H11A108.8
C3—C2—C7119.88 (17)C12—C11—H11B108.8
C3—C2—C1118.13 (15)N1—C11—H11B108.8
C7—C2—C1121.95 (15)H11A—C11—H11B107.7
C4—C3—C2120.48 (18)C13—C12—C17118.93 (18)
C4—C3—H3119.8C13—C12—C11121.11 (17)
C2—C3—H3119.8C17—C12—C11119.95 (17)
C3—C4—C5119.98 (18)C14—C13—C12120.24 (19)
C3—C4—H4120.0C14—C13—H13119.9
C5—C4—H4120.0C12—C13—H13119.9
C6—C5—C4119.49 (18)C15—C14—C13120.1 (2)
C6—C5—H5120.3C15—C14—H14120.0
C4—C5—H5120.3C13—C14—H14120.0
C5—C6—C7121.30 (18)C16—C15—C14120.3 (2)
C5—C6—H6119.4C16—C15—H15119.8
C7—C6—H6119.4C14—C15—H15119.8
C6—C7—C2118.85 (16)C15—C16—C17119.9 (2)
C6—C7—C8120.32 (15)C15—C16—H16120.0
C2—C7—C8120.78 (16)C17—C16—H16120.0
C7—C8—C9114.30 (14)C16—C17—C12120.5 (2)
C7—C8—H8A108.7C16—C17—H17119.8
C9—C8—H8A108.7C12—C17—H17119.8
C7—C8—H8B108.7
C9—N1—C1—C247.47 (18)C11—N1—C9—C8170.53 (14)
C11—N1—C1—C2178.80 (14)C7—C8—C9—N146.10 (19)
N1—C1—C2—C3163.47 (15)C7—C8—C9—C10−80.80 (18)
N1—C1—C2—C7−18.8 (2)N1—C9—C10—O11.5 (2)
C7—C2—C3—C4−1.3 (3)C8—C9—C10—O1126.28 (19)
C1—C2—C3—C4176.48 (18)N1—C9—C10—O2179.67 (14)
C2—C3—C4—C51.1 (3)C8—C9—C10—O2−55.54 (19)
C3—C4—C5—C6−0.7 (3)C9—N1—C11—C12−37.9 (2)
C4—C5—C6—C70.5 (3)C1—N1—C11—C12−167.86 (14)
C5—C6—C7—C2−0.7 (3)N1—C11—C12—C13−65.2 (2)
C5—C6—C7—C8176.86 (17)N1—C11—C12—C17115.34 (18)
C3—C2—C7—C61.1 (2)C17—C12—C13—C140.0 (3)
C1—C2—C7—C6−176.63 (16)C11—C12—C13—C14−179.48 (18)
C3—C2—C7—C8−176.46 (16)C12—C13—C14—C151.0 (3)
C1—C2—C7—C85.9 (2)C13—C14—C15—C16−0.8 (3)
C6—C7—C8—C9162.44 (15)C14—C15—C16—C17−0.3 (3)
C2—C7—C8—C9−20.1 (2)C15—C16—C17—C121.3 (3)
C1—N1—C9—C1066.57 (17)C13—C12—C17—C16−1.1 (3)
C11—N1—C9—C10−61.44 (18)C11—C12—C17—C16178.37 (18)
C1—N1—C9—C8−61.46 (17)
Cg is the centroid of the C12–C17 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl1i0.97 (2)2.09 (2)3.0521 (15)176.(1)
O2—H2···O3ii0.96 (2)1.59 (2)2.533 (2)167 (3)
O3—H3A···Cl1i0.96 (2)2.21 (2)3.1615 (15)172 (2)
O3—H3B···Cl10.96 (2)2.20 (2)3.1434 (16)165 (2)
C9—H9···O1iii1.002.303.169 (2)145
C15—H15···Cgiii0.952.783.386 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C12–C17 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cl1i0.97 (2)2.09 (2)3.0521 (15)176 (1)
O2—H2⋯O3ii0.96 (2)1.59 (2)2.533 (2)167 (3)
O3—H3A⋯Cl1i0.96 (2)2.21 (2)3.1615 (15)172 (2)
O3—H3B⋯Cl10.96 (2)2.20 (2)3.1434 (16)165 (2)
C9—H9⋯O1iii1.002.303.169 (2)145
C15—H15⋯Cgiii0.952.783.386 (3)122

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (1R,3S)-Methyl 2-benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Michael McKay; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

3.  (1R,3S)-Methyl 6,7-dimeth-oxy-1-(4-meth-oxy-phen-yl)-1,2,3,4-tetra-hydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06

4.  (R)-4-Phenyl-2-[(S)-1,2,3,4-tetra-hydro-isoquinolin-3-yl]-4,5-dihydro-1,3-oxazole.

Authors:  Sai K Chakka; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

5.  (S)-N-Benzyl-2-methyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxamide.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

6.  (S)-2-Benzyl-N-(2,6-diisopropyl-phen-yl)-1,2,3,4-tetra-hydro-isoquinoline-3-carboxamide.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
  6 in total
  1 in total

1.  Methyl 1-cyclo-hexyl-6,7-dimeth-oxy-3,4-dihydro-isoquinoline-3-carboxyl-ate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-15
  1 in total

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