| Literature DB >> 21583223 |
Naser Eltaher Eltayeb, Siang Guan Teoh, Hoong-Kun Fun, Samuel Robinson Jebas, Rohana Adnan.
Abstract
In the title mol-ecule, C(20)H(16)N(2)O(2), the benzimidazole mean plane forms dihedral angles of 56.55 (3) and 81.65 (4)° with the two benzene rings. In the crystal structure, inter-molecular O-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules into layers parallel to the (101) plane. The crystal packing also exhibits weak inter-molecular C-H⋯O and C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21583223 PMCID: PMC2969736 DOI: 10.1107/S1600536809018698
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H16N2O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 8327 reflections |
| θ = 2.4–37.2° | |
| µ = 0.09 mm−1 | |
| β = 96.948 (1)° | Plate, colourless |
| 0.55 × 0.34 × 0.15 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 7426 independent reflections |
| Radiation source: fine-focus sealed tube | 6004 reflections with |
| graphite | |
| φ and ω scans | θmax = 36.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 34106 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 7426 reflections | (Δ/σ)max < 0.001 |
| 225 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.29 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.60369 (7) | 0.60548 (5) | 0.04595 (5) | 0.01932 (13) | |
| O2 | 0.21201 (7) | 0.70928 (6) | 0.49193 (6) | 0.02850 (16) | |
| N1 | 0.36876 (7) | 0.35014 (5) | 0.31082 (5) | 0.01366 (12) | |
| N2 | 0.55084 (7) | 0.30903 (6) | 0.41524 (5) | 0.01468 (12) | |
| C1 | 0.34113 (8) | 0.26119 (6) | 0.37376 (6) | 0.01385 (13) | |
| C2 | 0.22644 (8) | 0.20556 (7) | 0.38301 (6) | 0.01625 (14) | |
| H2A | 0.1502 | 0.2247 | 0.3415 | 0.019* | |
| C3 | 0.23254 (9) | 0.12006 (7) | 0.45759 (7) | 0.01787 (15) | |
| H3A | 0.1581 | 0.0820 | 0.4676 | 0.021* | |
| C4 | 0.34872 (9) | 0.08978 (7) | 0.51829 (7) | 0.01903 (16) | |
| H4A | 0.3497 | 0.0308 | 0.5659 | 0.023* | |
| C5 | 0.46206 (9) | 0.14602 (7) | 0.50872 (7) | 0.01765 (15) | |
| H5A | 0.5388 | 0.1255 | 0.5486 | 0.021* | |
| C6 | 0.45615 (8) | 0.23468 (6) | 0.43671 (6) | 0.01408 (13) | |
| C7 | 0.49493 (8) | 0.37658 (6) | 0.34028 (6) | 0.01328 (13) | |
| C8 | 0.55758 (8) | 0.47449 (6) | 0.29966 (6) | 0.01346 (13) | |
| C9 | 0.55681 (8) | 0.49315 (6) | 0.18938 (6) | 0.01442 (13) | |
| H9A | 0.5214 | 0.4411 | 0.1398 | 0.017* | |
| C10 | 0.60956 (8) | 0.59058 (6) | 0.15413 (6) | 0.01466 (14) | |
| C11 | 0.66423 (8) | 0.66833 (7) | 0.22849 (6) | 0.01679 (15) | |
| H11A | 0.6988 | 0.7333 | 0.2049 | 0.020* | |
| C12 | 0.66666 (9) | 0.64783 (7) | 0.33810 (7) | 0.01769 (15) | |
| H12A | 0.7041 | 0.6990 | 0.3876 | 0.021* | |
| C13 | 0.61356 (8) | 0.55155 (7) | 0.37433 (6) | 0.01600 (14) | |
| H13A | 0.6153 | 0.5385 | 0.4477 | 0.019* | |
| C14 | 0.27189 (8) | 0.40916 (7) | 0.23858 (6) | 0.01493 (14) | |
| H14A | 0.2199 | 0.3560 | 0.1948 | 0.018* | |
| H14B | 0.3144 | 0.4556 | 0.1907 | 0.018* | |
| C15 | 0.18581 (8) | 0.47993 (7) | 0.29866 (6) | 0.01546 (14) | |
| C16 | 0.05416 (9) | 0.46392 (8) | 0.28541 (7) | 0.02214 (17) | |
| H16A | 0.0182 | 0.4078 | 0.2409 | 0.027* | |
| C17 | −0.02425 (10) | 0.53232 (10) | 0.33909 (9) | 0.0298 (2) | |
| H17A | −0.1126 | 0.5226 | 0.3289 | 0.036* | |
| C18 | 0.02893 (10) | 0.61473 (9) | 0.40753 (8) | 0.0276 (2) | |
| H18A | −0.0235 | 0.6601 | 0.4432 | 0.033* | |
| C19 | 0.16150 (9) | 0.62907 (8) | 0.42254 (7) | 0.02011 (16) | |
| C20 | 0.23951 (8) | 0.56315 (7) | 0.36681 (6) | 0.01647 (14) | |
| H20A | 0.3276 | 0.5746 | 0.3750 | 0.020* | |
| H1O1 | 0.6430 (17) | 0.6716 (15) | 0.0307 (14) | 0.053 (5)* | |
| H1O2 | 0.3026 (18) | 0.6952 (15) | 0.5216 (14) | 0.055 (5)* |
| O1 | 0.0266 (3) | 0.0181 (3) | 0.0133 (2) | −0.0054 (2) | 0.0028 (2) | 0.00132 (19) |
| O2 | 0.0206 (3) | 0.0285 (3) | 0.0336 (4) | 0.0103 (3) | −0.0083 (3) | −0.0167 (3) |
| N1 | 0.0134 (3) | 0.0145 (3) | 0.0127 (3) | 0.0004 (2) | 0.0002 (2) | 0.0011 (2) |
| N2 | 0.0139 (3) | 0.0155 (3) | 0.0144 (3) | 0.0006 (2) | 0.0007 (2) | 0.0009 (2) |
| C1 | 0.0148 (3) | 0.0135 (3) | 0.0131 (3) | −0.0001 (2) | 0.0012 (3) | −0.0002 (2) |
| C2 | 0.0151 (3) | 0.0170 (3) | 0.0162 (3) | −0.0022 (3) | 0.0003 (3) | −0.0013 (2) |
| C3 | 0.0204 (4) | 0.0161 (3) | 0.0173 (3) | −0.0041 (3) | 0.0029 (3) | −0.0011 (2) |
| C4 | 0.0242 (4) | 0.0149 (3) | 0.0181 (3) | −0.0023 (3) | 0.0027 (3) | 0.0015 (3) |
| C5 | 0.0197 (4) | 0.0158 (3) | 0.0169 (3) | 0.0008 (3) | 0.0001 (3) | 0.0024 (2) |
| C6 | 0.0147 (3) | 0.0136 (3) | 0.0137 (3) | 0.0002 (2) | 0.0008 (3) | −0.0003 (2) |
| C7 | 0.0131 (3) | 0.0143 (3) | 0.0124 (3) | 0.0001 (2) | 0.0013 (2) | −0.0007 (2) |
| C8 | 0.0122 (3) | 0.0142 (3) | 0.0140 (3) | 0.0001 (2) | 0.0018 (2) | −0.0003 (2) |
| C9 | 0.0159 (3) | 0.0142 (3) | 0.0131 (3) | −0.0019 (2) | 0.0018 (3) | −0.0008 (2) |
| C10 | 0.0154 (3) | 0.0151 (3) | 0.0138 (3) | −0.0006 (3) | 0.0026 (3) | −0.0001 (2) |
| C11 | 0.0183 (4) | 0.0148 (3) | 0.0173 (3) | −0.0026 (3) | 0.0023 (3) | −0.0013 (2) |
| C12 | 0.0186 (4) | 0.0180 (3) | 0.0165 (3) | −0.0035 (3) | 0.0021 (3) | −0.0036 (2) |
| C13 | 0.0161 (4) | 0.0180 (3) | 0.0138 (3) | −0.0011 (3) | 0.0016 (3) | −0.0019 (2) |
| C14 | 0.0145 (3) | 0.0177 (3) | 0.0120 (3) | 0.0020 (3) | −0.0010 (3) | 0.0002 (2) |
| C15 | 0.0148 (3) | 0.0176 (3) | 0.0136 (3) | 0.0022 (3) | 0.0000 (3) | 0.0002 (2) |
| C16 | 0.0145 (4) | 0.0283 (4) | 0.0229 (4) | 0.0005 (3) | −0.0007 (3) | −0.0069 (3) |
| C17 | 0.0133 (4) | 0.0409 (6) | 0.0349 (5) | 0.0020 (4) | 0.0017 (4) | −0.0144 (4) |
| C18 | 0.0162 (4) | 0.0369 (5) | 0.0292 (5) | 0.0071 (4) | 0.0002 (3) | −0.0126 (4) |
| C19 | 0.0174 (4) | 0.0217 (4) | 0.0200 (4) | 0.0057 (3) | −0.0028 (3) | −0.0053 (3) |
| C20 | 0.0137 (3) | 0.0178 (3) | 0.0172 (3) | 0.0026 (3) | −0.0006 (3) | −0.0017 (3) |
| O1—C10 | 1.3607 (10) | C9—C10 | 1.3977 (11) |
| O1—H1O1 | 0.931 (19) | C9—H9A | 0.9300 |
| O2—C19 | 1.3671 (11) | C10—C11 | 1.3980 (11) |
| O2—H1O2 | 0.994 (19) | C11—C12 | 1.3922 (11) |
| N1—C7 | 1.3709 (10) | C11—H11A | 0.9300 |
| N1—C1 | 1.3861 (10) | C12—C13 | 1.3922 (11) |
| N1—C14 | 1.4641 (11) | C12—H12A | 0.9300 |
| N2—C7 | 1.3275 (10) | C13—H13A | 0.9300 |
| N2—C6 | 1.3923 (10) | C14—C15 | 1.5114 (11) |
| C1—C2 | 1.3981 (11) | C14—H14A | 0.9700 |
| C1—C6 | 1.3986 (12) | C14—H14B | 0.9700 |
| C2—C3 | 1.3906 (11) | C15—C16 | 1.3874 (13) |
| C2—H2A | 0.9300 | C15—C20 | 1.3951 (11) |
| C3—C4 | 1.4070 (13) | C16—C17 | 1.3970 (13) |
| C3—H3A | 0.9300 | C16—H16A | 0.9300 |
| C4—C5 | 1.3901 (12) | C17—C18 | 1.3882 (14) |
| C4—H4A | 0.9300 | C17—H17A | 0.9300 |
| C5—C6 | 1.3987 (11) | C18—C19 | 1.3944 (14) |
| C5—H5A | 0.9300 | C18—H18A | 0.9300 |
| C7—C8 | 1.4763 (10) | C19—C20 | 1.3911 (11) |
| C8—C9 | 1.3985 (10) | C20—H20A | 0.9300 |
| C8—C13 | 1.3995 (11) | ||
| C10—O1—H1O1 | 110.5 (11) | C9—C10—C11 | 120.33 (7) |
| C19—O2—H1O2 | 113.3 (10) | C12—C11—C10 | 119.59 (7) |
| C7—N1—C1 | 106.91 (6) | C12—C11—H11A | 120.2 |
| C7—N1—C14 | 129.07 (7) | C10—C11—H11A | 120.2 |
| C1—N1—C14 | 123.56 (7) | C11—C12—C13 | 120.69 (8) |
| C7—N2—C6 | 105.62 (7) | C11—C12—H12A | 119.7 |
| N1—C1—C2 | 131.58 (8) | C13—C12—H12A | 119.7 |
| N1—C1—C6 | 105.82 (7) | C12—C13—C8 | 119.56 (7) |
| C2—C1—C6 | 122.56 (7) | C12—C13—H13A | 120.2 |
| C3—C2—C1 | 116.37 (8) | C8—C13—H13A | 120.2 |
| C3—C2—H2A | 121.8 | N1—C14—C15 | 112.50 (6) |
| C1—C2—H2A | 121.8 | N1—C14—H14A | 109.1 |
| C2—C3—C4 | 121.56 (8) | C15—C14—H14A | 109.1 |
| C2—C3—H3A | 119.2 | N1—C14—H14B | 109.1 |
| C4—C3—H3A | 119.2 | C15—C14—H14B | 109.1 |
| C5—C4—C3 | 121.52 (8) | H14A—C14—H14B | 107.8 |
| C5—C4—H4A | 119.2 | C16—C15—C20 | 119.87 (7) |
| C3—C4—H4A | 119.2 | C16—C15—C14 | 120.66 (7) |
| C4—C5—C6 | 117.39 (8) | C20—C15—C14 | 119.46 (7) |
| C4—C5—H5A | 121.3 | C15—C16—C17 | 119.85 (9) |
| C6—C5—H5A | 121.3 | C15—C16—H16A | 120.1 |
| N2—C6—C1 | 109.41 (7) | C17—C16—H16A | 120.1 |
| N2—C6—C5 | 130.08 (8) | C18—C17—C16 | 120.42 (9) |
| C1—C6—C5 | 120.50 (7) | C18—C17—H17A | 119.8 |
| N2—C7—N1 | 112.19 (7) | C16—C17—H17A | 119.8 |
| N2—C7—C8 | 124.10 (7) | C17—C18—C19 | 119.60 (8) |
| N1—C7—C8 | 123.52 (7) | C17—C18—H18A | 120.2 |
| C9—C8—C13 | 120.26 (7) | C19—C18—H18A | 120.2 |
| C9—C8—C7 | 121.37 (7) | O2—C19—C20 | 121.29 (8) |
| C13—C8—C7 | 118.31 (7) | O2—C19—C18 | 118.63 (8) |
| C10—C9—C8 | 119.55 (7) | C20—C19—C18 | 120.08 (8) |
| C10—C9—H9A | 120.2 | C19—C20—C15 | 120.13 (8) |
| C8—C9—H9A | 120.2 | C19—C20—H20A | 119.9 |
| O1—C10—C9 | 117.03 (7) | C15—C20—H20A | 119.9 |
| O1—C10—C11 | 122.64 (7) | ||
| C7—N1—C1—C2 | 175.17 (8) | N1—C7—C8—C13 | 121.97 (8) |
| C14—N1—C1—C2 | 2.30 (12) | C13—C8—C9—C10 | −1.55 (12) |
| C7—N1—C1—C6 | −2.40 (8) | C7—C8—C9—C10 | 175.65 (7) |
| C14—N1—C1—C6 | −175.27 (6) | C8—C9—C10—O1 | −178.61 (7) |
| N1—C1—C2—C3 | −178.27 (8) | C8—C9—C10—C11 | 0.81 (12) |
| C6—C1—C2—C3 | −1.05 (11) | O1—C10—C11—C12 | 179.82 (8) |
| C1—C2—C3—C4 | −1.54 (12) | C9—C10—C11—C12 | 0.44 (13) |
| C2—C3—C4—C5 | 1.89 (13) | C10—C11—C12—C13 | −0.95 (13) |
| C3—C4—C5—C6 | 0.40 (12) | C11—C12—C13—C8 | 0.22 (13) |
| C7—N2—C6—C1 | −1.16 (8) | C9—C8—C13—C12 | 1.04 (12) |
| C7—N2—C6—C5 | 180.00 (8) | C7—C8—C13—C12 | −176.24 (8) |
| N1—C1—C6—N2 | 2.23 (8) | C7—N1—C14—C15 | −98.85 (9) |
| C2—C1—C6—N2 | −175.61 (7) | C1—N1—C14—C15 | 72.35 (9) |
| N1—C1—C6—C5 | −178.80 (7) | N1—C14—C15—C16 | −121.88 (9) |
| C2—C1—C6—C5 | 3.37 (11) | N1—C14—C15—C20 | 59.08 (10) |
| C4—C5—C6—N2 | 175.81 (8) | C20—C15—C16—C17 | 0.98 (14) |
| C4—C5—C6—C1 | −2.93 (11) | C14—C15—C16—C17 | −178.05 (9) |
| C6—N2—C7—N1 | −0.41 (8) | C15—C16—C17—C18 | −1.43 (17) |
| C6—N2—C7—C8 | 174.77 (7) | C16—C17—C18—C19 | 0.02 (18) |
| C1—N1—C7—N2 | 1.81 (8) | C17—C18—C19—O2 | −178.72 (10) |
| C14—N1—C7—N2 | 174.16 (7) | C17—C18—C19—C20 | 1.83 (16) |
| C1—N1—C7—C8 | −173.40 (7) | O2—C19—C20—C15 | 178.29 (8) |
| C14—N1—C7—C8 | −1.05 (11) | C18—C19—C20—C15 | −2.28 (14) |
| N2—C7—C8—C9 | 130.08 (8) | C16—C15—C20—C19 | 0.86 (13) |
| N1—C7—C8—C9 | −55.28 (11) | C14—C15—C20—C19 | 179.91 (8) |
| N2—C7—C8—C13 | −52.67 (10) |
| H··· | ||||
| O1—H1O1···O2i | 0.931 (19) | 1.712 (19) | 2.6406 (9) | 175.4 (17) |
| O2—H1O2···N2ii | 0.994 (19) | 1.646 (19) | 2.6297 (10) | 169.7 (16) |
| C3—H3A···O1iii | 0.93 | 2.57 | 3.2987 (10) | 136 |
| C9—H9A···O1iv | 0.93 | 2.59 | 3.4287 (10) | 150 |
| C12—H12A···Cg1ii | 0.93 | 2.67 | 3.4521 (9) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1O1⋯O2i | 0.931 (19) | 1.712 (19) | 2.6406 (9) | 175.4 (17) |
| O2—H1O2⋯N2ii | 0.994 (19) | 1.646 (19) | 2.6297 (10) | 169.7 (16) |
| C3—H3 | 0.93 | 2.57 | 3.2987 (10) | 136 |
| C9—H9 | 0.93 | 2.59 | 3.4287 (10) | 150 |
| C12—H12 | 0.93 | 2.67 | 3.4521 (9) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the ring C1–C6.