| Literature DB >> 21578706 |
Mustafa Tombul, Kutalmis Guven.
Abstract
The asymmetric unit of the title compound, [Li(2)(C(6)H(2)N(2)O(4))(H(2)O)(3)](n), consists of two independent Li(+) cations, one pyrazine-2,3-dicarboxyl-ate dianion and three water mol-ecules. One of the Li(+) cations has a distorted tetra-hedral geometry, coordinated by one of the carboxyl-ate O atoms of the pyrazine-2,3-dicarboxyl-ate ligand and three O atoms from three water mol-ecules, whereas the other Li(+) cation has a distorted trigonal-bipyramidal geometry, coordinated by a carboxyl-ate O atom of a symmetry-related pyrazine-2,3-dicarboxyl-ate ligand, two water mol-ecules and a chelating pyrazine-2,3-dicarboxyl-ate ligand (by utilizing both N and O atoms) of an adjacent mol-ecule. The synthesis of a hydrated polymeric dinuclear lithium complex formed with two pyrazine-2,3-dicarboxylic acid ligands has been reported previously [Tombul et al. (2008a ▶). Acta Cryst. E64, m491-m492]. By comparision to the complex reported here, the dinuclear complex formed with two pyrazine-2,3-dicarboxylic acid ligands differs in the coordination geometry of both Li atoms. The crystal structure further features O-H⋯O and O-H⋯N hydrogen-bonding inter-actions involving the water mol-ecules and carboxyl-ate O atoms.Entities:
Year: 2009 PMID: 21578706 PMCID: PMC2971803 DOI: 10.1107/S1600536809050570
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Li2(C6H2N2O4)(H2O)3] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 3.0–7.9° | |
| µ = 0.14 mm−1 | |
| β = 92.92 (3)° | Prism, yellow |
| 0.4 × 0.2 × 0.06 mm | |
| Rigaku diffractometer | 2427 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 40.0°, θmin = 2.7° |
| ω–2θ scans | |
| Absorption correction: ψ scan (North | |
| 6366 measured reflections | 3 standard reflections every 150 reflections |
| 6045 independent reflections | intensity decay: none |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 6045 reflections | (Δ/σ)max < 0.001 |
| 178 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.54 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.01123 (18) | 0.24672 (8) | 0.0505 (2) | 0.0341 (3) | |
| O2 | 0.06063 (17) | 0.37715 (7) | 0.09640 (16) | 0.0236 (3) | |
| O3 | 0.20616 (17) | 0.43281 (7) | 0.43623 (16) | 0.0238 (3) | |
| O4 | 0.39167 (18) | 0.47554 (7) | 0.24601 (18) | 0.0277 (3) | |
| O5 | 0.03262 (19) | 0.56609 (8) | 0.21735 (17) | 0.0252 (3) | |
| H5A | 0.004 (4) | 0.5875 (17) | 0.129 (4) | 0.043 (8)* | |
| H5B | 0.147 (5) | 0.558 (2) | 0.222 (4) | 0.069 (10)* | |
| O6 | 0.17467 (17) | 0.58515 (8) | 0.56590 (16) | 0.0224 (2) | |
| H6A | 0.272 (4) | 0.613 (2) | 0.581 (4) | 0.058 (9)* | |
| H6B | 0.206 (4) | 0.5391 (19) | 0.519 (3) | 0.048 (8)* | |
| O7 | −0.2951 (2) | 0.46974 (13) | 0.0850 (2) | 0.0479 (5) | |
| H7A | −0.316 (5) | 0.501 (2) | −0.004 (5) | 0.082 (12)* | |
| H7B | −0.394 (5) | 0.465 (2) | 0.139 (4) | 0.064 (10)* | |
| N1 | 0.29092 (19) | 0.19673 (8) | 0.21499 (19) | 0.0228 (3) | |
| N2 | 0.52735 (19) | 0.30911 (9) | 0.3651 (2) | 0.0246 (3) | |
| C1 | 0.0838 (2) | 0.30153 (9) | 0.1146 (2) | 0.0195 (3) | |
| C2 | 0.2524 (2) | 0.27631 (9) | 0.2158 (2) | 0.0172 (3) | |
| C3 | 0.4472 (3) | 0.17365 (11) | 0.2881 (3) | 0.0296 (4) | |
| H3 | 0.4761 | 0.1185 | 0.2920 | 0.036* | |
| C4 | 0.5669 (2) | 0.22967 (11) | 0.3582 (3) | 0.0300 (4) | |
| H4 | 0.6777 | 0.2118 | 0.4017 | 0.036* | |
| C5 | 0.3672 (2) | 0.33240 (9) | 0.2984 (2) | 0.0171 (3) | |
| C6 | 0.31766 (19) | 0.42055 (9) | 0.3264 (2) | 0.0168 (3) | |
| Li1 | −0.0795 (5) | 0.4524 (2) | 0.2209 (4) | 0.0289 (7) | |
| Li2 | −0.0490 (4) | 0.63229 (18) | 0.4210 (4) | 0.0252 (6) |
| O1 | 0.0312 (7) | 0.0205 (6) | 0.0488 (9) | −0.0017 (5) | −0.0159 (6) | −0.0045 (6) |
| O2 | 0.0304 (6) | 0.0161 (5) | 0.0240 (6) | 0.0064 (4) | −0.0028 (5) | −0.0005 (4) |
| O3 | 0.0310 (6) | 0.0158 (5) | 0.0257 (6) | 0.0022 (4) | 0.0123 (5) | 0.0002 (4) |
| O4 | 0.0300 (6) | 0.0176 (5) | 0.0367 (7) | −0.0035 (4) | 0.0129 (5) | 0.0050 (5) |
| O5 | 0.0298 (6) | 0.0255 (6) | 0.0201 (6) | 0.0068 (5) | 0.0016 (5) | 0.0034 (5) |
| O6 | 0.0224 (5) | 0.0192 (5) | 0.0253 (6) | −0.0002 (4) | −0.0005 (4) | −0.0020 (4) |
| O7 | 0.0300 (8) | 0.0775 (14) | 0.0371 (9) | 0.0162 (8) | 0.0109 (6) | 0.0208 (9) |
| N1 | 0.0256 (7) | 0.0129 (5) | 0.0297 (7) | 0.0026 (5) | −0.0004 (5) | −0.0022 (5) |
| N2 | 0.0191 (6) | 0.0208 (6) | 0.0334 (8) | 0.0025 (5) | −0.0024 (5) | −0.0025 (5) |
| C1 | 0.0225 (7) | 0.0161 (6) | 0.0197 (7) | 0.0025 (5) | −0.0008 (5) | −0.0017 (5) |
| C2 | 0.0178 (6) | 0.0133 (5) | 0.0209 (7) | 0.0012 (5) | 0.0024 (5) | −0.0005 (5) |
| C3 | 0.0296 (8) | 0.0169 (7) | 0.0417 (11) | 0.0074 (6) | −0.0043 (7) | −0.0015 (7) |
| C4 | 0.0229 (7) | 0.0224 (7) | 0.0438 (11) | 0.0083 (6) | −0.0060 (7) | −0.0020 (7) |
| C5 | 0.0180 (6) | 0.0132 (5) | 0.0201 (7) | 0.0007 (5) | 0.0022 (5) | 0.0000 (5) |
| C6 | 0.0174 (6) | 0.0120 (5) | 0.0212 (7) | −0.0002 (4) | 0.0016 (5) | 0.0002 (5) |
| Li1 | 0.0367 (17) | 0.0197 (13) | 0.0312 (17) | 0.0031 (12) | 0.0100 (13) | 0.0010 (12) |
| Li2 | 0.0300 (15) | 0.0163 (12) | 0.0294 (16) | 0.0004 (11) | 0.0045 (12) | 0.0027 (11) |
| O5—Li1 | 2.046 (4) | N2—C4 | 1.338 (2) |
| O5—Li2 | 2.069 (4) | N2—C5 | 1.342 (2) |
| O5—H5B | 0.87 (4) | C2—C5 | 1.400 (2) |
| O5—H5A | 0.80 (3) | C2—C1 | 1.519 (2) |
| O4—C6 | 1.2517 (19) | C5—C6 | 1.513 (2) |
| O6—Li2 | 2.129 (4) | C4—C3 | 1.382 (3) |
| O6—H6A | 0.87 (3) | C4—H4 | 0.9300 |
| O6—H6B | 0.88 (3) | C3—H3 | 0.9300 |
| O1—C1 | 1.241 (2) | Li2—O1ii | 1.942 (3) |
| O2—C1 | 1.260 (2) | Li2—O3iii | 1.988 (3) |
| O2—Li1 | 1.927 (3) | Li2—N1ii | 2.317 (4) |
| O3—C6 | 1.2552 (19) | Li1—O7 | 1.918 (4) |
| N1—C3 | 1.335 (2) | Li1—O6iii | 1.973 (4) |
| N1—C2 | 1.337 (2) | O7—H7A | 0.88 (4) |
| N1—Li2i | 2.317 (4) | O7—H7B | 0.88 (4) |
| Li1—O5—Li2 | 109.27 (14) | N1—C3—C4 | 121.58 (16) |
| Li1—O5—H5B | 105 (2) | N1—C3—H3 | 119.2 |
| Li2—O5—H5B | 112 (2) | C4—C3—H3 | 119.2 |
| Li1—O5—H5A | 109 (2) | O1—C1—O2 | 126.41 (15) |
| Li2—O5—H5A | 112 (2) | O1—C1—C2 | 117.66 (14) |
| H5B—O5—H5A | 109 (3) | O2—C1—C2 | 115.79 (14) |
| Li1iii—O6—Li2 | 105.71 (15) | O4—C6—O3 | 124.60 (14) |
| Li1iii—O6—H6A | 112 (2) | O4—C6—C5 | 119.72 (14) |
| Li2—O6—H6A | 121 (2) | O3—C6—C5 | 115.64 (13) |
| Li1iii—O6—H6B | 102.5 (18) | O1ii—Li2—O3iii | 126.42 (18) |
| Li2—O6—H6B | 107.5 (18) | O1ii—Li2—O5 | 121.53 (17) |
| H6A—O6—H6B | 106 (3) | O3iii—Li2—O5 | 111.87 (15) |
| C1—O1—Li2i | 121.88 (15) | O1ii—Li2—O6 | 96.70 (15) |
| C1—O2—Li1 | 130.35 (15) | O3iii—Li2—O6 | 88.14 (13) |
| C6—O3—Li2iii | 138.22 (14) | O5—Li2—O6 | 88.74 (13) |
| C3—N1—C2 | 117.34 (14) | O1ii—Li2—N1ii | 77.56 (12) |
| C3—N1—Li2i | 136.14 (14) | O3iii—Li2—N1ii | 92.34 (14) |
| C2—N1—Li2i | 106.51 (13) | O5—Li2—N1ii | 97.38 (14) |
| C4—N2—C5 | 117.17 (15) | O6—Li2—N1ii | 173.18 (17) |
| N1—C2—C5 | 121.12 (14) | O7—Li1—O2 | 105.65 (18) |
| N1—C2—C1 | 115.90 (13) | O7—Li1—O6iii | 101.58 (17) |
| C5—C2—C1 | 122.89 (13) | O2—Li1—O6iii | 118.14 (18) |
| N2—C5—C2 | 120.88 (14) | O7—Li1—O5 | 101.05 (17) |
| N2—C5—C6 | 115.78 (13) | O2—Li1—O5 | 110.05 (17) |
| C2—C5—C6 | 123.27 (13) | O6iii—Li1—O5 | 117.60 (17) |
| N2—C4—C3 | 121.58 (16) | Li1—O7—H7A | 130 (3) |
| N2—C4—H4 | 119.2 | Li1—O7—H7B | 115 (2) |
| C3—C4—H4 | 119.2 | H7A—O7—H7B | 109 (3) |
| C3—N1—C2—C5 | −3.5 (2) | C5—C2—C1—O2 | 6.1 (2) |
| Li2i—N1—C2—C5 | 176.03 (15) | Li2iii—O3—C6—O4 | 174.97 (19) |
| C3—N1—C2—C1 | 173.33 (16) | Li2iii—O3—C6—C5 | −7.5 (3) |
| Li2i—N1—C2—C1 | −7.18 (18) | N2—C5—C6—O4 | 73.8 (2) |
| C4—N2—C5—C2 | −4.0 (3) | C2—C5—C6—O4 | −109.25 (19) |
| C4—N2—C5—C6 | 172.98 (16) | N2—C5—C6—O3 | −103.86 (18) |
| N1—C2—C5—N2 | 6.5 (3) | C2—C5—C6—O3 | 73.1 (2) |
| C1—C2—C5—N2 | −170.03 (15) | Li1—O5—Li2—O1ii | −174.09 (18) |
| N1—C2—C5—C6 | −170.25 (15) | Li1—O5—Li2—O3iii | 1.3 (2) |
| C1—C2—C5—C6 | 13.2 (2) | Li1—O5—Li2—O6 | 88.83 (16) |
| C5—N2—C4—C3 | −1.1 (3) | Li1—O5—Li2—N1ii | −94.19 (16) |
| C2—N1—C3—C4 | −1.6 (3) | Li1iii—O6—Li2—O1ii | 105.93 (16) |
| Li2i—N1—C3—C4 | 179.05 (19) | Li1iii—O6—Li2—O3iii | −20.53 (16) |
| N2—C4—C3—N1 | 4.1 (3) | Li1iii—O6—Li2—O5 | −132.46 (14) |
| Li2i—O1—C1—O2 | 176.24 (17) | C1—O2—Li1—O7 | −101.2 (2) |
| Li2i—O1—C1—C2 | 0.7 (2) | C1—O2—Li1—O6iii | 11.5 (3) |
| Li1—O2—C1—O1 | 87.8 (3) | C1—O2—Li1—O5 | 150.45 (16) |
| Li1—O2—C1—C2 | −96.7 (2) | Li2—O5—Li1—O7 | 91.67 (18) |
| N1—C2—C1—O1 | 5.3 (2) | Li2—O5—Li1—O2 | −156.99 (16) |
| C5—C2—C1—O1 | −177.97 (16) | Li2—O5—Li1—O6iii | −17.8 (2) |
| N1—C2—C1—O2 | −170.67 (15) |
| H··· | ||||
| O5—H5A···O2iv | 0.81 (3) | 1.92 (3) | 2.723 (3) | 172.60 (3) |
| O5—H5B···O4 | 0.87 (4) | 2.28 (4) | 3.068 (3) | 152 (3) |
| O6—H6A···N2v | 0.86 (3) | 2.00 (3) | 2.857 (3) | 169.66 (4) |
| O6—H6B···O3 | 0.88 (3) | 1.86 (3) | 2.719 (3) | 163 (3) |
| O7—H7A···O4iv | 0.88 (4) | 2.02 (4) | 2.841 (3) | 154.89 (6) |
| O7—H7B···O4vi | 0.88 (4) | 1.86 (4) | 2.730 (3) | 169.51 (6) |
Selected bond lengths (Å)
| O5—Li1 | 2.046 (4) |
| O5—Li2 | 2.069 (4) |
| O6—Li2 | 2.129 (4) |
| O2—Li1 | 1.927 (3) |
| N1—Li2i | 2.317 (4) |
| Li2—O1ii | 1.942 (3) |
| Li2—O3iii | 1.988 (3) |
| Li1—O7 | 1.918 (4) |
| Li1—O6iii | 1.973 (4) |
Symmetry codes: (i) ; (ii) ; (iii) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O5—H5 | 0.81 (3) | 1.92 (3) | 2.723 (3) | 172.60 (3) |
| O5—H5 | 0.87 (4) | 2.28 (4) | 3.068 (3) | 152 (3) |
| O6—H6 | 0.86 (3) | 2.00 (3) | 2.857 (3) | 169.66 (4) |
| O6—H6 | 0.88 (3) | 1.86 (3) | 2.719 (3) | 163 (3) |
| O7—H7 | 0.88 (4) | 2.02 (4) | 2.841 (3) | 154.89 (6) |
| O7—H7 | 0.88 (4) | 1.86 (4) | 2.730 (3) | 169.51 (6) |
Symmetry codes: (iv) ; (v) ; (vi) .