Literature DB >> 21578706

Poly[μ-aqua-diaqua-(μ(2)-pyrazine-2,3-dicarboxyl-ato)dilithium(I)].

Mustafa Tombul, Kutalmis Guven.   

Abstract

The asymmetric unit of the title compound, [Li(2)(C(6)H(2)N(2)O(4))(H(2)O)(3)](n), consists of two independent Li(+) cations, one pyrazine-2,3-dicarboxyl-ate dianion and three water mol-ecules. One of the Li(+) cations has a distorted tetra-hedral geometry, coordinated by one of the carboxyl-ate O atoms of the pyrazine-2,3-dicarboxyl-ate ligand and three O atoms from three water mol-ecules, whereas the other Li(+) cation has a distorted trigonal-bipyramidal geometry, coordinated by a carboxyl-ate O atom of a symmetry-related pyrazine-2,3-dicarboxyl-ate ligand, two water mol-ecules and a chelating pyrazine-2,3-dicarboxyl-ate ligand (by utilizing both N and O atoms) of an adjacent mol-ecule. The synthesis of a hydrated polymeric dinuclear lithium complex formed with two pyrazine-2,3-dicarboxylic acid ligands has been reported previously [Tombul et al. (2008a ▶). Acta Cryst. E64, m491-m492]. By comparision to the complex reported here, the dinuclear complex formed with two pyrazine-2,3-dicarboxylic acid ligands differs in the coordination geometry of both Li atoms. The crystal structure further features O-H⋯O and O-H⋯N hydrogen-bonding inter-actions involving the water mol-ecules and carboxyl-ate O atoms.

Entities:  

Year:  2009        PMID: 21578706      PMCID: PMC2971803          DOI: 10.1107/S1600536809050570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a general background to multidendate carboxylic acids, see: Erxleben (2003 ▶); Ye et al. (2005 ▶); Fei et al. (2006 ▶). For further information on pyrazine-2,3-dicarboxylic acid, see: Takusagawa & Shimada (1973 ▶); Richard et al. (1973 ▶); Nepveu et al. (1993 ▶). For further information on the synthesis of metal complexes with pyrazine-2,3-dicarboxylic acid ligand, see: Tombul & Güven (2009 ▶); Tombul et al. (2006 ▶, 2007 ▶, 2008b ▶). For a related structure of lithium with pyrazine-2,3-dicarb­oxylic acid ligand, see: Tombul et al. (2008a ▶). For Li—O bond distances, see: Chen et al. (2007 ▶); Kim et al. (2007 ▶). For Li—N bond lengths, see: Grossie et al. (2006 ▶); Boyd et al. (2002 ▶).

Experimental

Crystal data

[Li2(C6H2N2O4)(H2O)3] M = 234.02 Monoclinic, a = 7.487 (3) Å b = 16.409 (8) Å c = 7.958 (2) Å β = 92.92 (3)° V = 976.4 (7) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 298 K 0.40 × 0.20 × 0.06 mm

Data collection

Rigaku AFC-7S diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.948, T max = 0.994 6366 measured reflections 6045 independent reflections 2427 reflections with I > 2σ(I) R int = 0.120 3 standard reflections frequency: 150 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.211 S = 0.96 6045 reflections 178 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.54 e Å−3 Data collection: MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1989 ▶); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molec­ular Structure Corporation, 1993 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050570/om2293sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050570/om2293Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li2(C6H2N2O4)(H2O)3]F(000) = 480
Mr = 234.02Dx = 1.592 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.487 (3) Åθ = 3.0–7.9°
b = 16.409 (8) ŵ = 0.14 mm1
c = 7.958 (2) ÅT = 298 K
β = 92.92 (3)°Prism, yellow
V = 976.4 (7) Å30.4 × 0.2 × 0.06 mm
Z = 4
Rigaku diffractometer2427 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.120
graphiteθmax = 40.0°, θmin = 2.7°
ω–2θ scansh = 0→13
Absorption correction: ψ scan (North et al., 1968)k = 0→29
Tmin = 0.948, Tmax = 0.994l = −14→14
6366 measured reflections3 standard reflections every 150 reflections
6045 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.211H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0977P)2] where P = (Fo2 + 2Fc2)/3
6045 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.54 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.01123 (18)0.24672 (8)0.0505 (2)0.0341 (3)
O20.06063 (17)0.37715 (7)0.09640 (16)0.0236 (3)
O30.20616 (17)0.43281 (7)0.43623 (16)0.0238 (3)
O40.39167 (18)0.47554 (7)0.24601 (18)0.0277 (3)
O50.03262 (19)0.56609 (8)0.21735 (17)0.0252 (3)
H5A0.004 (4)0.5875 (17)0.129 (4)0.043 (8)*
H5B0.147 (5)0.558 (2)0.222 (4)0.069 (10)*
O60.17467 (17)0.58515 (8)0.56590 (16)0.0224 (2)
H6A0.272 (4)0.613 (2)0.581 (4)0.058 (9)*
H6B0.206 (4)0.5391 (19)0.519 (3)0.048 (8)*
O7−0.2951 (2)0.46974 (13)0.0850 (2)0.0479 (5)
H7A−0.316 (5)0.501 (2)−0.004 (5)0.082 (12)*
H7B−0.394 (5)0.465 (2)0.139 (4)0.064 (10)*
N10.29092 (19)0.19673 (8)0.21499 (19)0.0228 (3)
N20.52735 (19)0.30911 (9)0.3651 (2)0.0246 (3)
C10.0838 (2)0.30153 (9)0.1146 (2)0.0195 (3)
C20.2524 (2)0.27631 (9)0.2158 (2)0.0172 (3)
C30.4472 (3)0.17365 (11)0.2881 (3)0.0296 (4)
H30.47610.11850.29200.036*
C40.5669 (2)0.22967 (11)0.3582 (3)0.0300 (4)
H40.67770.21180.40170.036*
C50.3672 (2)0.33240 (9)0.2984 (2)0.0171 (3)
C60.31766 (19)0.42055 (9)0.3264 (2)0.0168 (3)
Li1−0.0795 (5)0.4524 (2)0.2209 (4)0.0289 (7)
Li2−0.0490 (4)0.63229 (18)0.4210 (4)0.0252 (6)
U11U22U33U12U13U23
O10.0312 (7)0.0205 (6)0.0488 (9)−0.0017 (5)−0.0159 (6)−0.0045 (6)
O20.0304 (6)0.0161 (5)0.0240 (6)0.0064 (4)−0.0028 (5)−0.0005 (4)
O30.0310 (6)0.0158 (5)0.0257 (6)0.0022 (4)0.0123 (5)0.0002 (4)
O40.0300 (6)0.0176 (5)0.0367 (7)−0.0035 (4)0.0129 (5)0.0050 (5)
O50.0298 (6)0.0255 (6)0.0201 (6)0.0068 (5)0.0016 (5)0.0034 (5)
O60.0224 (5)0.0192 (5)0.0253 (6)−0.0002 (4)−0.0005 (4)−0.0020 (4)
O70.0300 (8)0.0775 (14)0.0371 (9)0.0162 (8)0.0109 (6)0.0208 (9)
N10.0256 (7)0.0129 (5)0.0297 (7)0.0026 (5)−0.0004 (5)−0.0022 (5)
N20.0191 (6)0.0208 (6)0.0334 (8)0.0025 (5)−0.0024 (5)−0.0025 (5)
C10.0225 (7)0.0161 (6)0.0197 (7)0.0025 (5)−0.0008 (5)−0.0017 (5)
C20.0178 (6)0.0133 (5)0.0209 (7)0.0012 (5)0.0024 (5)−0.0005 (5)
C30.0296 (8)0.0169 (7)0.0417 (11)0.0074 (6)−0.0043 (7)−0.0015 (7)
C40.0229 (7)0.0224 (7)0.0438 (11)0.0083 (6)−0.0060 (7)−0.0020 (7)
C50.0180 (6)0.0132 (5)0.0201 (7)0.0007 (5)0.0022 (5)0.0000 (5)
C60.0174 (6)0.0120 (5)0.0212 (7)−0.0002 (4)0.0016 (5)0.0002 (5)
Li10.0367 (17)0.0197 (13)0.0312 (17)0.0031 (12)0.0100 (13)0.0010 (12)
Li20.0300 (15)0.0163 (12)0.0294 (16)0.0004 (11)0.0045 (12)0.0027 (11)
O5—Li12.046 (4)N2—C41.338 (2)
O5—Li22.069 (4)N2—C51.342 (2)
O5—H5B0.87 (4)C2—C51.400 (2)
O5—H5A0.80 (3)C2—C11.519 (2)
O4—C61.2517 (19)C5—C61.513 (2)
O6—Li22.129 (4)C4—C31.382 (3)
O6—H6A0.87 (3)C4—H40.9300
O6—H6B0.88 (3)C3—H30.9300
O1—C11.241 (2)Li2—O1ii1.942 (3)
O2—C11.260 (2)Li2—O3iii1.988 (3)
O2—Li11.927 (3)Li2—N1ii2.317 (4)
O3—C61.2552 (19)Li1—O71.918 (4)
N1—C31.335 (2)Li1—O6iii1.973 (4)
N1—C21.337 (2)O7—H7A0.88 (4)
N1—Li2i2.317 (4)O7—H7B0.88 (4)
Li1—O5—Li2109.27 (14)N1—C3—C4121.58 (16)
Li1—O5—H5B105 (2)N1—C3—H3119.2
Li2—O5—H5B112 (2)C4—C3—H3119.2
Li1—O5—H5A109 (2)O1—C1—O2126.41 (15)
Li2—O5—H5A112 (2)O1—C1—C2117.66 (14)
H5B—O5—H5A109 (3)O2—C1—C2115.79 (14)
Li1iii—O6—Li2105.71 (15)O4—C6—O3124.60 (14)
Li1iii—O6—H6A112 (2)O4—C6—C5119.72 (14)
Li2—O6—H6A121 (2)O3—C6—C5115.64 (13)
Li1iii—O6—H6B102.5 (18)O1ii—Li2—O3iii126.42 (18)
Li2—O6—H6B107.5 (18)O1ii—Li2—O5121.53 (17)
H6A—O6—H6B106 (3)O3iii—Li2—O5111.87 (15)
C1—O1—Li2i121.88 (15)O1ii—Li2—O696.70 (15)
C1—O2—Li1130.35 (15)O3iii—Li2—O688.14 (13)
C6—O3—Li2iii138.22 (14)O5—Li2—O688.74 (13)
C3—N1—C2117.34 (14)O1ii—Li2—N1ii77.56 (12)
C3—N1—Li2i136.14 (14)O3iii—Li2—N1ii92.34 (14)
C2—N1—Li2i106.51 (13)O5—Li2—N1ii97.38 (14)
C4—N2—C5117.17 (15)O6—Li2—N1ii173.18 (17)
N1—C2—C5121.12 (14)O7—Li1—O2105.65 (18)
N1—C2—C1115.90 (13)O7—Li1—O6iii101.58 (17)
C5—C2—C1122.89 (13)O2—Li1—O6iii118.14 (18)
N2—C5—C2120.88 (14)O7—Li1—O5101.05 (17)
N2—C5—C6115.78 (13)O2—Li1—O5110.05 (17)
C2—C5—C6123.27 (13)O6iii—Li1—O5117.60 (17)
N2—C4—C3121.58 (16)Li1—O7—H7A130 (3)
N2—C4—H4119.2Li1—O7—H7B115 (2)
C3—C4—H4119.2H7A—O7—H7B109 (3)
C3—N1—C2—C5−3.5 (2)C5—C2—C1—O26.1 (2)
Li2i—N1—C2—C5176.03 (15)Li2iii—O3—C6—O4174.97 (19)
C3—N1—C2—C1173.33 (16)Li2iii—O3—C6—C5−7.5 (3)
Li2i—N1—C2—C1−7.18 (18)N2—C5—C6—O473.8 (2)
C4—N2—C5—C2−4.0 (3)C2—C5—C6—O4−109.25 (19)
C4—N2—C5—C6172.98 (16)N2—C5—C6—O3−103.86 (18)
N1—C2—C5—N26.5 (3)C2—C5—C6—O373.1 (2)
C1—C2—C5—N2−170.03 (15)Li1—O5—Li2—O1ii−174.09 (18)
N1—C2—C5—C6−170.25 (15)Li1—O5—Li2—O3iii1.3 (2)
C1—C2—C5—C613.2 (2)Li1—O5—Li2—O688.83 (16)
C5—N2—C4—C3−1.1 (3)Li1—O5—Li2—N1ii−94.19 (16)
C2—N1—C3—C4−1.6 (3)Li1iii—O6—Li2—O1ii105.93 (16)
Li2i—N1—C3—C4179.05 (19)Li1iii—O6—Li2—O3iii−20.53 (16)
N2—C4—C3—N14.1 (3)Li1iii—O6—Li2—O5−132.46 (14)
Li2i—O1—C1—O2176.24 (17)C1—O2—Li1—O7−101.2 (2)
Li2i—O1—C1—C20.7 (2)C1—O2—Li1—O6iii11.5 (3)
Li1—O2—C1—O187.8 (3)C1—O2—Li1—O5150.45 (16)
Li1—O2—C1—C2−96.7 (2)Li2—O5—Li1—O791.67 (18)
N1—C2—C1—O15.3 (2)Li2—O5—Li1—O2−156.99 (16)
C5—C2—C1—O1−177.97 (16)Li2—O5—Li1—O6iii−17.8 (2)
N1—C2—C1—O2−170.67 (15)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O2iv0.81 (3)1.92 (3)2.723 (3)172.60 (3)
O5—H5B···O40.87 (4)2.28 (4)3.068 (3)152 (3)
O6—H6A···N2v0.86 (3)2.00 (3)2.857 (3)169.66 (4)
O6—H6B···O30.88 (3)1.86 (3)2.719 (3)163 (3)
O7—H7A···O4iv0.88 (4)2.02 (4)2.841 (3)154.89 (6)
O7—H7B···O4vi0.88 (4)1.86 (4)2.730 (3)169.51 (6)
Table 1

Selected bond lengths (Å)

O5—Li12.046 (4)
O5—Li22.069 (4)
O6—Li22.129 (4)
O2—Li11.927 (3)
N1—Li2i 2.317 (4)
Li2—O1ii 1.942 (3)
Li2—O3iii 1.988 (3)
Li1—O71.918 (4)
Li1—O6iii 1.973 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H5A⋯O2iv 0.81 (3)1.92 (3)2.723 (3)172.60 (3)
O5—H5B⋯O40.87 (4)2.28 (4)3.068 (3)152 (3)
O6—H6A⋯N2v 0.86 (3)2.00 (3)2.857 (3)169.66 (4)
O6—H6B⋯O30.88 (3)1.86 (3)2.719 (3)163 (3)
O7—H7A⋯O4iv 0.88 (4)2.02 (4)2.841 (3)154.89 (6)
O7—H7B⋯O4vi 0.88 (4)1.86 (4)2.730 (3)169.51 (6)

Symmetry codes: (iv) ; (v) ; (vi) .

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4.  Tetraaqua-1kappaO,2kappa3O-(mu-2,4-dinitrophenolato-1kappa2O1,O2:2kappaO1)(2,4-dinitrophenolato-1kappa2O1,O2)dilithium(I): a dinuclear lithium(I) complex.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

2.  catena-Poly[[(6-carb-oxy-pyrazine-2-carboxyl-ato)lithium]-μ-aqua].

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4.  Poly[(μ4-3-carb-oxy-pyrazine-2-carboxyl-ato)(μ4-nitrato)dilithium].

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