Literature DB >> 23476354

Poly[(μ4-3-carb-oxy-pyrazine-2-carboxyl-ato)(μ4-nitrato)dilithium].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

In the title compound, [Li2(C6H3N2O4)2(NO3)] n , the two symmetry-independent Li(I) ions are each in a trigonal-bipyramidal coordination and are bridged by N,O-bonding ligands, forming mol-ecular ribbons propagating in [010]. Each Li(I) ion is also coordinated by two O atoms from nitrate ions, connecting the ribbons into a three-dimensional network. Very strong intra-molecular O-H⋯O hydrogen bonds occur between the carboxyl and the carboxylate group.

Entities:  

Year:  2012        PMID: 23476354      PMCID: PMC3588327          DOI: 10.1107/S1600536812050738

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For three structures of lithium(I) complexes with pyrazine-2,3-dicarboxyl­ate and water ligands, see: Tombul et al. (2008 ▶); Tombul & Güven (2009) ▶; Starosta & Leciejewicz (2011 ▶). For structures of calcium(II) complexes with the title ligand, see: Ptasiewicz-Bąk & Leciejewicz (1997 ▶); Starosta & Leciejewicz (2004 ▶, 2005a ▶,b ▶).

Experimental

Crystal data

[Li2(C6H3N2O4)2(NO3)] M = 241.99 Monoclinic, a = 4.6273 (1) Å b = 15.8565 (3) Å c = 6.1719 (2) Å β = 95.598 (2)° V = 450.69 (2) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.20 × 0.14 × 0.12 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.936, T max = 1.000 4032 measured reflections 2572 independent reflections 2401 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.084 S = 1.10 2572 reflections 167 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812050738/kp2442sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050738/kp2442Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li2(C6H3N2O4)2(NO3)]F(000) = 242
Mr = 241.99Dx = 1.783 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2509 reflections
a = 4.6273 (1) Åθ = 3.3–30.7°
b = 15.8565 (3) ŵ = 0.16 mm1
c = 6.1719 (2) ÅT = 293 K
β = 95.598 (2)°Block, colourless
V = 450.69 (2) Å30.20 × 0.14 × 0.12 mm
Z = 2
Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer2572 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2401 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.015
Detector resolution: 16.0131 pixels mm-1θmax = 30.7°, θmin = 3.3°
ω scansh = −5→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −21→22
Tmin = 0.936, Tmax = 1.000l = −5→8
4032 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0337P)2 + 0.0702P] where P = (Fo2 + 2Fc2)/3
2572 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5316 (3)0.40681 (8)0.6101 (2)0.0322 (3)
O50.4586 (3)0.48672 (8)0.0630 (2)0.0297 (3)
C20.4874 (4)0.27654 (10)0.4273 (3)0.0223 (3)
N40.5051 (4)0.14644 (9)0.2348 (2)0.0279 (3)
N10.6499 (3)0.31421 (9)0.2871 (2)0.0278 (3)
N20.1867 (3)0.47658 (9)0.0539 (2)0.0243 (3)
O20.2330 (4)0.31513 (9)0.7378 (3)0.0427 (4)
C80.2425 (4)0.13507 (11)0.5462 (3)0.0261 (3)
C30.4152 (4)0.19074 (10)0.4027 (3)0.0228 (3)
O70.0838 (3)0.43786 (9)0.2022 (3)0.0393 (3)
O60.0354 (3)0.50501 (10)−0.1046 (2)0.0388 (3)
C50.6615 (4)0.18550 (12)0.0970 (3)0.0326 (4)
H50.72230.1559−0.02050.039*
C70.4118 (4)0.33782 (11)0.6048 (3)0.0267 (3)
C60.7368 (5)0.27000 (11)0.1245 (3)0.0338 (4)
H60.85000.29570.02690.041*
Li10.7058 (7)0.44849 (19)0.3298 (5)0.0289 (6)
Li20.3903 (7)0.0133 (2)0.2244 (5)0.0300 (6)
O30.2524 (3)0.05895 (8)0.5143 (2)0.0329 (3)
O40.1008 (4)0.16985 (8)0.6880 (3)0.0444 (4)
H10.153 (8)0.252 (2)0.713 (6)0.093 (11)*
U11U22U33U12U13U23
O10.0444 (8)0.0222 (6)0.0311 (7)−0.0058 (6)0.0086 (6)−0.0054 (5)
O50.0184 (5)0.0402 (7)0.0307 (6)−0.0033 (5)0.0045 (4)0.0052 (5)
C20.0242 (7)0.0194 (7)0.0236 (7)0.0013 (6)0.0044 (6)0.0004 (6)
N40.0352 (8)0.0224 (7)0.0275 (8)−0.0012 (6)0.0092 (6)−0.0022 (6)
N10.0337 (8)0.0208 (6)0.0303 (8)−0.0019 (6)0.0103 (6)0.0006 (6)
N20.0223 (6)0.0230 (6)0.0285 (7)−0.0014 (5)0.0073 (5)−0.0009 (5)
O20.0596 (9)0.0274 (6)0.0463 (9)−0.0092 (7)0.0320 (7)−0.0110 (6)
C80.0308 (9)0.0230 (8)0.0249 (9)−0.0012 (7)0.0039 (7)0.0008 (6)
C30.0237 (8)0.0214 (7)0.0239 (8)0.0003 (6)0.0050 (6)0.0017 (6)
O70.0332 (7)0.0416 (8)0.0461 (8)0.0019 (6)0.0197 (6)0.0144 (6)
O60.0280 (7)0.0479 (8)0.0392 (7)−0.0007 (6)−0.0036 (6)0.0101 (6)
C50.0433 (10)0.0271 (9)0.0301 (9)0.0005 (8)0.0173 (8)−0.0051 (7)
C70.0322 (9)0.0217 (7)0.0265 (8)0.0010 (6)0.0045 (7)−0.0022 (6)
C60.0426 (11)0.0258 (8)0.0356 (10)−0.0016 (8)0.0171 (8)0.0032 (7)
Li10.0342 (16)0.0249 (14)0.0288 (15)0.0009 (12)0.0097 (12)0.0000 (12)
Li20.0382 (16)0.0234 (13)0.0287 (15)0.0015 (13)0.0052 (13)0.0008 (12)
O30.0495 (8)0.0207 (6)0.0293 (6)−0.0037 (5)0.0085 (6)0.0027 (5)
O40.0629 (10)0.0275 (7)0.0488 (9)−0.0113 (7)0.0359 (8)−0.0059 (6)
O1—C71.225 (2)O2—C71.273 (2)
O1—Li2i1.989 (3)O2—H11.07 (4)
Li1—O12.086 (3)C8—O31.224 (2)
O5—N21.2643 (18)C8—O41.269 (2)
Li1—O52.005 (3)C8—C31.530 (2)
Li1—N12.158 (3)O7—Li1iv1.994 (3)
Li1—O7ii1.994 (3)O6—Li2v2.040 (4)
Li1—O3i1.999 (3)C5—C61.391 (3)
O5—Li2iii2.014 (3)C5—H50.9300
C2—N11.341 (2)C6—H60.9300
C2—C31.406 (2)Li1—Li2i3.011 (4)
C2—C71.530 (2)Li2—O1vi1.989 (3)
N4—C51.324 (2)Li2—O5vii2.014 (3)
N4—C31.351 (2)Li2—O6viii2.040 (4)
Li2—N42.176 (3)Li2—O32.086 (3)
N1—C61.319 (2)Li2—Li1vi3.011 (4)
N2—O61.231 (2)O3—Li1vi1.999 (3)
N2—O71.2359 (19)O4—H11.34 (4)
C7—O1—Li2i146.19 (15)C5—C6—H6119.5
C7—O1—Li1118.12 (15)O7ii—Li1—O3i102.51 (15)
Li2i—O1—Li195.24 (14)O7ii—Li1—O598.83 (14)
N2—O5—Li1118.93 (13)O3i—Li1—O598.69 (14)
N2—O5—Li2iii114.63 (14)O7ii—Li1—O1136.49 (18)
Li1—O5—Li2iii124.59 (14)O3i—Li1—O184.57 (13)
N1—C2—C3120.27 (14)O5—Li1—O1122.78 (17)
N1—C2—C7111.15 (14)O7ii—Li1—N188.16 (13)
C3—C2—C7128.55 (15)O3i—Li1—N1158.15 (18)
C5—N4—C3118.59 (14)O5—Li1—N198.41 (14)
C5—N4—Li2125.60 (15)O1—Li1—N174.76 (11)
C3—N4—Li2115.76 (14)O7ii—Li1—Li2i127.08 (16)
C6—N1—C2119.08 (15)O3i—Li1—Li2i43.67 (9)
C6—N1—Li1125.14 (14)O5—Li1—Li2i121.60 (15)
C2—N1—Li1115.41 (13)O1—Li1—Li2i41.13 (9)
O6—N2—O7122.70 (15)N1—Li1—Li2i114.95 (13)
O6—N2—O5118.37 (14)O1vi—Li2—O5vii102.31 (15)
O7—N2—O5118.93 (15)O1vi—Li2—O6viii104.59 (16)
C7—O2—H1114 (2)O5vii—Li2—O6viii94.18 (14)
O3—C8—O4124.69 (17)O1vi—Li2—O384.81 (13)
O3—C8—C3116.47 (15)O5vii—Li2—O3171.64 (18)
O4—C8—C3118.83 (14)O6viii—Li2—O388.17 (14)
N4—C3—C2119.89 (14)O1vi—Li2—N4141.01 (18)
N4—C3—C8111.18 (14)O5vii—Li2—N497.16 (14)
C2—C3—C8128.92 (14)O6viii—Li2—N4107.32 (15)
N2—O7—Li1iv131.81 (15)O3—Li2—N474.49 (12)
N2—O6—Li2v139.98 (15)O1vi—Li2—Li1vi43.63 (9)
N4—C5—C6121.23 (16)O5vii—Li2—Li1vi145.93 (15)
N4—C5—H5119.4O6viii—Li2—Li1vi94.92 (13)
C6—C5—H5119.4O3—Li2—Li1vi41.41 (9)
O1—C7—O2123.79 (16)N4—Li2—Li1vi111.21 (14)
O1—C7—C2116.83 (15)C8—O3—Li1vi142.15 (15)
O2—C7—C2119.38 (15)C8—O3—Li2119.94 (14)
N1—C6—C5120.92 (17)Li1vi—O3—Li294.92 (14)
N1—C6—H6119.5C8—O4—H1113.8 (17)
C3—C2—N1—C61.0 (3)N2—O5—Li1—Li2i−57.2 (2)
C7—C2—N1—C6179.39 (16)Li2iii—O5—Li1—Li2i139.21 (19)
C3—C2—N1—Li1174.35 (15)C7—O1—Li1—O7ii−88.5 (3)
C7—C2—N1—Li1−7.3 (2)Li2i—O1—Li1—O7ii97.2 (3)
Li1—O5—N2—O6175.52 (16)C7—O1—Li1—O3i168.99 (15)
Li2iii—O5—N2—O6−19.3 (2)Li2i—O1—Li1—O3i−5.28 (15)
Li1—O5—N2—O7−5.3 (2)C7—O1—Li1—O572.1 (2)
Li2iii—O5—N2—O7159.91 (16)Li2i—O1—Li1—O5−102.13 (19)
C5—N4—C3—C20.3 (3)C7—O1—Li1—N1−18.14 (18)
Li2—N4—C3—C2177.86 (16)Li2i—O1—Li1—N1167.59 (13)
C5—N4—C3—C8−179.02 (17)C7—O1—Li1—Li2i174.3 (2)
Li2—N4—C3—C8−1.4 (2)C6—N1—Li1—O7ii−34.8 (2)
N1—C2—C3—N4−1.3 (3)C2—N1—Li1—O7ii152.34 (15)
C7—C2—C3—N4−179.31 (17)C6—N1—Li1—O3i−155.0 (4)
N1—C2—C3—C8177.86 (17)C2—N1—Li1—O3i32.2 (6)
C7—C2—C3—C8−0.2 (3)C6—N1—Li1—O563.8 (2)
O3—C8—C3—N412.0 (2)C2—N1—Li1—O5−109.00 (16)
O4—C8—C3—N4−167.97 (17)C6—N1—Li1—O1−174.35 (17)
O3—C8—C3—C2−167.18 (17)C2—N1—Li1—O112.80 (17)
O4—C8—C3—C212.8 (3)C6—N1—Li1—Li2i−165.38 (18)
O6—N2—O7—Li1iv−32.3 (3)C2—N1—Li1—Li2i21.8 (2)
O5—N2—O7—Li1iv148.58 (19)C5—N4—Li2—O1vi112.0 (3)
O7—N2—O6—Li2v1.3 (3)C3—N4—Li2—O1vi−65.4 (3)
O5—N2—O6—Li2v−179.55 (19)C5—N4—Li2—O5vii−7.8 (2)
C3—N4—C5—C60.9 (3)C3—N4—Li2—O5vii174.83 (14)
Li2—N4—C5—C6−176.40 (18)C5—N4—Li2—O6viii−104.4 (2)
Li2i—O1—C7—O29.4 (4)C3—N4—Li2—O6viii78.16 (19)
Li1—O1—C7—O2−160.34 (19)C5—N4—Li2—O3172.54 (18)
Li2i—O1—C7—C2−170.2 (2)C3—N4—Li2—O3−4.88 (16)
Li1—O1—C7—C220.1 (2)C5—N4—Li2—Li1vi153.02 (18)
N1—C2—C7—O1−7.9 (2)C3—N4—Li2—Li1vi−24.4 (2)
C3—C2—C7—O1170.27 (18)O4—C8—O3—Li1vi−43.1 (4)
N1—C2—C7—O2172.51 (18)C3—C8—O3—Li1vi136.9 (2)
C3—C2—C7—O2−9.3 (3)O4—C8—O3—Li2162.41 (19)
C2—N1—C6—C50.2 (3)C3—C8—O3—Li2−17.6 (2)
Li1—N1—C6—C5−172.44 (19)O1vi—Li2—O3—C8159.34 (16)
N4—C5—C6—N1−1.2 (3)O5vii—Li2—O3—C810.7 (14)
N2—O5—Li1—O7ii158.55 (14)O6viii—Li2—O3—C8−95.84 (18)
Li2iii—O5—Li1—O7ii−5.1 (2)N4—Li2—O3—C812.71 (19)
N2—O5—Li1—O3i−97.24 (17)Li1vi—Li2—O3—C8164.6 (2)
Li2iii—O5—Li1—O3i99.13 (17)O1vi—Li2—O3—Li1vi−5.27 (15)
N2—O5—Li1—O1−8.1 (2)O5vii—Li2—O3—Li1vi−153.9 (13)
Li2iii—O5—Li1—O1−171.75 (15)O6viii—Li2—O3—Li1vi99.55 (14)
N2—O5—Li1—N169.12 (17)N4—Li2—O3—Li1vi−151.90 (13)
Li2iii—O5—Li1—N1−94.52 (18)
D—H···AD—HH···AD···AD—H···A
O2—H1···O41.07 (4)1.34 (4)2.3955 (19)170 (4)
Table 1

Selected bond lengths (Å)

Li1—O12.086 (3)
Li1—O52.005 (3)
Li1—N12.158 (3)
Li1—O7i 1.994 (3)
Li1—O3ii 1.999 (3)
Li2—N42.176 (3)
Li2—O1iii 1.989 (3)
Li2—O5iv 2.014 (3)
Li2—O6v 2.040 (4)
Li2—O32.086 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H1⋯O41.07 (4)1.34 (4)2.3955 (19)170 (4)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(aqualithium)-μ-3-carboxypyrazine-2-carboxylato-κO,N:O,N] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

3.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

4.  Poly[μ-aqua-diaqua-(μ(2)-pyrazine-2,3-dicarboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmis Guven
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28
  4 in total
  1 in total

1.  catena-Poly[[aqua-lithium(I)]-μ-3-carb-oxy-5,6-di-methyl-pyrazine-2-carboxyl-ato-κ(4) O (2),N (1):O (3),N (4)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-13
  1 in total

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