Literature DB >> 24454167

catena-Poly[[aqua-lithium(I)]-μ-3-carb-oxy-5,6-di-methyl-pyrazine-2-carboxyl-ato-κ(4) O (2),N (1):O (3),N (4)].

Wojciech Starosta1, Janusz Leciejewicz1.   

Abstract

The asymmetric unit of the title compound, [Li(C8H6N2O4)(H2O)] n , comprises three Li cations, two of which are located on a twofold rotation axis, two carboxylate anions and three water mol-ecules, of which two are situated on the twofold rotation axis being aqua ligands. Both carboxylate anions are in μ2-bridging mode. All Li ions show a trigonal-bipyramidal coordination mode; the two located in special positions are bridged through N,O-bonding sites generating a polymeric ribbon along the c-axis direction. The Li cation in a general position creates an independent polymeric ribbon through N,O-bonding sites of the two symmetry-related ligands; the trigonal-bipyramidal coordination is completed by an aqua ligand. In both carboxylate anions, a carboxyl-ate and a carb-oxy-lic acid group form an intra-molecular hydrogen bond. The polymeric ribbons running along [001] are inter-connected by hydrogen bonds in which the water mol-ecules act as donors and carboxyl-ate O atoms act as acceptors, giving rise to a three-dimensional architecture.

Entities:  

Year:  2013        PMID: 24454167      PMCID: PMC3884992          DOI: 10.1107/S1600536813030493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of lithium complexes with pyrazine-2,3-di­carboxyl­ate ligands, see: Tombul et al. (2008 ▶); Tombul & Güven (2009) ▶; Starosta & Leciejewicz (2011 ▶, 2013 ▶). The structure of 5,6-di­methyl­pyrazine-2,3-di­carb­oxy­lic acid dihydrate was reported by Vishwershwar et al. (2001 ▶).

Experimental

Crystal data

[Li(C8H7N2O4)(H2O)] M = 220.11 Monoclinic, a = 16.9052 (2) Å b = 16.7980 (2) Å c = 14.3805 (2) Å β = 97.272 (1)° V = 4050.83 (9) Å3 Z = 16 Cu Kα radiation μ = 1.02 mm−1 T = 293 K 0.24 × 0.07 × 0.02 mm

Data collection

Oxford Diffraction Xcalibur Ruby diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010 ▶), using a multifaceted crystal model (Clark & Reid, 1995 ▶)] T min = 0.738, T max = 0.958 37580 measured reflections 3808 independent reflections 2898 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 0.97 3808 reflections 319 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813030493/kp2460sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813030493/kp2460Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C8H7N2O4)(H2O)]Z = 16
Mr = 220.11F(000) = 1824
Monoclinic, C2/cDx = 1.444 Mg m3
Hall symbol: -C 2ycCu Kα radiation, λ = 1.54178 Å
a = 16.9052 (2) ŵ = 1.02 mm1
b = 16.7980 (2) ÅT = 293 K
c = 14.3805 (2) ÅPlate, colourless
β = 97.272 (1)°0.24 × 0.07 × 0.02 mm
V = 4050.83 (9) Å3
Oxford Diffraction Xcalibur Ruby diffractometer3808 independent reflections
Radiation source: Enhance (Cu) X-ray Source2898 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 10.4922 pixels mm-1θmax = 70.1°, θmin = 3.7°
rotation method, ω scansh = −20→20
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010), using a multifaceted crystal model (Clark & Reid, 1995)]k = −20→20
Tmin = 0.738, Tmax = 0.958l = −15→17
37580 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 0.97w = 1/[σ2(Fo2) + (0.0785P)2] where P = (Fo2 + 2Fc2)/3
3808 reflections(Δ/σ)max < 0.001
319 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.66 (release 28-04-2010 CrysAlis171 .NET) (compiled Apr 28 2010,14:27:37) Analytical numeric absorption correction using a multifaceted crystal model (Clark & Reid, 1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O210.40317 (10)−0.10768 (8)0.21913 (9)0.0790 (4)
O220.44031 (11)−0.17638 (7)0.10322 (10)0.0800 (5)
H2210.4499 (17)−0.1704 (18)0.023 (2)0.120 (10)*
O240.42558 (9)−0.07834 (9)−0.17086 (8)0.0700 (4)
O230.46000 (10)−0.16051 (7)−0.05594 (9)0.0715 (4)
N210.36865 (7)0.02096 (7)0.12139 (8)0.0424 (3)
C220.39606 (8)−0.04057 (8)0.07412 (10)0.0401 (3)
C230.40339 (8)−0.03291 (8)−0.02084 (10)0.0404 (3)
N240.38516 (7)0.03671 (7)−0.06538 (8)0.0440 (3)
C250.36067 (9)0.09750 (8)−0.01817 (11)0.0459 (3)
C260.35079 (9)0.08917 (9)0.07754 (11)0.0447 (3)
C270.41428 (11)−0.11261 (10)0.13755 (12)0.0545 (4)
C280.43074 (10)−0.09444 (10)−0.08791 (11)0.0501 (4)
C290.34350 (14)0.17437 (11)−0.07011 (14)0.0694 (5)
H2910.35710.1692−0.13260.104*
H2930.37460.2163−0.03820.104*
H2920.28780.1868−0.07270.104*
C300.31919 (13)0.15546 (10)0.13190 (13)0.0660 (5)
H3020.31410.13750.19420.099*
H3010.26790.17170.10140.099*
H3030.35530.19980.13490.099*
O11−0.09821 (8)0.12180 (9)0.68432 (9)0.0681 (4)
O12−0.16977 (7)0.06333 (9)0.56697 (9)0.0686 (4)
H121−0.1667 (15)0.0483 (16)0.4900 (19)0.100 (8)*
O13−0.08820 (9)0.05683 (9)0.29824 (8)0.0707 (4)
O14−0.16205 (7)0.02872 (9)0.40804 (9)0.0681 (4)
N110.02790 (7)0.13911 (7)0.59970 (8)0.0420 (3)
C12−0.03649 (8)0.10845 (8)0.54690 (10)0.0389 (3)
C13−0.03376 (8)0.09184 (8)0.45215 (10)0.0401 (3)
N140.03342 (8)0.10634 (7)0.41328 (8)0.0444 (3)
C150.09685 (9)0.13481 (9)0.46587 (11)0.0464 (3)
C160.09424 (9)0.15177 (9)0.56170 (11)0.0454 (3)
C17−0.10577 (9)0.09773 (9)0.60402 (11)0.0483 (4)
C18−0.09889 (10)0.05765 (9)0.38036 (12)0.0504 (4)
C190.17054 (12)0.14820 (14)0.41993 (14)0.0704 (5)
H1910.16170.12970.35630.106*
H1930.21430.11940.45340.106*
H1920.18290.20400.42070.106*
C200.16447 (11)0.18443 (13)0.62319 (13)0.0666 (5)
H2030.15120.19090.68570.100*
H2010.17890.23510.59940.100*
H2020.20860.14830.62400.100*
O150.00000.27959 (11)0.75000.0753 (6)
O250.25338 (8)−0.01032 (11)0.27697 (12)0.0805 (5)
Li110.00000.1656 (2)0.75000.0537 (9)
Li210.36552 (17)−0.01282 (17)0.2742 (2)0.0548 (6)
Li120.00000.1074 (2)0.25000.0558 (9)
O160.00000.21954 (12)0.25000.1067 (11)
H1610.0175 (17)0.2467 (17)0.2957 (18)0.105 (9)*
H1510.016 (2)0.310 (2)0.709 (2)0.160 (15)*
H2510.2275 (17)−0.0304 (16)0.323 (2)0.105 (9)*
H2520.220 (2)−0.0018 (19)0.233 (2)0.120 (11)*
U11U22U33U12U13U23
O210.1200 (12)0.0716 (8)0.0510 (7)0.0362 (8)0.0324 (8)0.0182 (6)
O220.1352 (13)0.0487 (6)0.0592 (8)0.0289 (7)0.0239 (8)0.0074 (6)
O240.0872 (9)0.0831 (8)0.0404 (7)0.0274 (7)0.0114 (6)−0.0068 (6)
O230.1044 (11)0.0566 (7)0.0541 (7)0.0250 (7)0.0130 (7)−0.0077 (6)
N210.0435 (6)0.0453 (6)0.0380 (6)0.0021 (5)0.0043 (5)−0.0027 (5)
C220.0396 (7)0.0425 (7)0.0381 (7)0.0009 (6)0.0046 (6)−0.0022 (6)
C230.0366 (7)0.0443 (7)0.0397 (8)−0.0007 (6)0.0028 (6)−0.0025 (6)
N240.0439 (6)0.0491 (7)0.0391 (7)0.0010 (5)0.0053 (5)0.0019 (5)
C250.0455 (8)0.0444 (7)0.0474 (9)0.0011 (6)0.0041 (7)0.0015 (6)
C260.0451 (8)0.0436 (7)0.0447 (8)0.0015 (6)0.0030 (6)−0.0043 (6)
C270.0681 (10)0.0500 (8)0.0465 (9)0.0109 (7)0.0124 (8)0.0059 (7)
C280.0506 (8)0.0575 (9)0.0420 (9)0.0052 (7)0.0057 (7)−0.0085 (7)
C290.0900 (14)0.0540 (9)0.0656 (12)0.0134 (9)0.0150 (10)0.0126 (8)
C300.0877 (13)0.0502 (9)0.0603 (11)0.0150 (9)0.0105 (10)−0.0088 (8)
O110.0600 (7)0.0964 (9)0.0515 (7)−0.0178 (7)0.0216 (6)−0.0156 (7)
O120.0442 (6)0.1023 (10)0.0612 (8)−0.0187 (6)0.0142 (6)−0.0090 (7)
O130.0803 (9)0.0879 (9)0.0423 (7)−0.0275 (7)0.0018 (6)−0.0057 (6)
O140.0529 (7)0.0927 (9)0.0578 (7)−0.0220 (6)0.0031 (6)−0.0094 (7)
N110.0428 (6)0.0435 (6)0.0399 (6)−0.0034 (5)0.0060 (5)0.0022 (5)
C120.0402 (7)0.0363 (6)0.0405 (8)0.0005 (5)0.0055 (6)0.0034 (5)
C130.0427 (7)0.0367 (6)0.0407 (8)0.0013 (5)0.0047 (6)0.0029 (6)
N140.0493 (7)0.0442 (6)0.0411 (7)−0.0022 (5)0.0107 (6)0.0021 (5)
C150.0447 (8)0.0474 (8)0.0487 (8)−0.0029 (6)0.0115 (7)0.0027 (6)
C160.0437 (8)0.0467 (7)0.0459 (8)−0.0045 (6)0.0068 (7)0.0050 (6)
C170.0431 (8)0.0536 (8)0.0494 (9)−0.0010 (6)0.0102 (7)0.0003 (7)
C180.0527 (9)0.0500 (8)0.0474 (9)−0.0041 (7)0.0019 (7)0.0003 (7)
C190.0571 (11)0.0933 (14)0.0649 (12)−0.0168 (10)0.0236 (9)−0.0071 (10)
C200.0524 (10)0.0911 (13)0.0556 (10)−0.0229 (9)0.0045 (8)−0.0006 (9)
O150.0985 (15)0.0525 (9)0.0844 (14)0.0000.0487 (12)0.000
O250.0477 (7)0.1254 (13)0.0678 (9)0.0029 (7)0.0043 (7)0.0356 (9)
Li110.058 (2)0.056 (2)0.048 (2)0.0000.0099 (18)0.000
Li210.0579 (15)0.0626 (15)0.0455 (14)0.0016 (13)0.0125 (12)−0.0005 (12)
Li120.071 (2)0.051 (2)0.046 (2)0.0000.0093 (19)0.000
O160.194 (3)0.0423 (9)0.0687 (14)0.000−0.0406 (17)0.000
O21—C271.214 (2)C27—Li212.786 (3)
Li11—O151.915 (4)C29—H2910.9600
Li11—O111.9473 (19)C29—H2930.9600
Li11—O11i1.9472 (19)C29—H2920.9600
Li11—N11i2.3128 (14)C30—H3020.9600
Li11—N112.3129 (14)C30—H3010.9600
Li12—O161.884 (4)C30—H3030.9600
Li12—O131.920 (2)O11—C171.215 (2)
Li12—O13ii1.920 (2)O12—C171.282 (2)
Li12—N14ii2.3446 (12)O12—H1211.14 (3)
Li12—N142.3446 (12)O13—C181.217 (2)
Li21—O251.902 (3)O14—C181.282 (2)
Li21—O211.923 (3)O14—H1211.24 (3)
Li21—O24iii1.949 (3)N11—C161.3255 (19)
Li21—N212.276 (3)N11—C121.3481 (19)
Li21—N24iii2.324 (3)C12—C131.397 (2)
O22—C271.281 (2)C12—C171.524 (2)
O22—H2211.18 (3)C13—N141.3499 (19)
O24—C281.215 (2)C13—C181.523 (2)
O24—Li21iv1.949 (3)N14—C151.321 (2)
O23—C281.277 (2)C15—C161.413 (2)
O23—H2211.19 (3)C15—C191.499 (2)
N21—C261.3242 (19)C16—C201.492 (2)
N21—C221.3509 (18)C19—H1910.9600
C22—C231.393 (2)C19—H1930.9600
C22—C271.523 (2)C19—H1920.9600
C23—N241.3502 (19)C20—H2030.9600
C23—C281.525 (2)C20—H2010.9600
N24—C251.3214 (19)C20—H2020.9600
N24—Li21iv2.324 (3)O15—H1510.85 (3)
C25—C261.414 (2)O25—H2510.91 (3)
C25—C291.502 (2)O25—H2520.80 (3)
C26—C301.497 (2)O16—H1610.82 (3)
C27—O21—Li21123.64 (14)N11—C16—C15120.13 (14)
C27—O22—H221113.5 (14)N11—C16—C20117.77 (14)
C28—O24—Li21iv122.81 (14)C15—C16—C20122.09 (14)
C28—O23—H221111.8 (14)O11—C17—O12121.80 (14)
C26—N21—C22119.64 (13)O11—C17—C12118.52 (14)
C26—N21—Li21130.06 (12)O12—C17—C12119.67 (14)
C22—N21—Li21110.26 (12)O13—C18—O14121.93 (15)
N21—C22—C23120.10 (13)O13—C18—C13118.59 (14)
N21—C22—C27111.27 (12)O14—C18—C13119.45 (14)
C23—C22—C27128.63 (13)C15—C19—H191109.5
N24—C23—C22120.12 (13)C15—C19—H193109.5
N24—C23—C28110.88 (13)H191—C19—H193109.5
C22—C23—C28129.00 (13)C15—C19—H192109.5
C25—N24—C23119.55 (13)H191—C19—H192109.5
C25—N24—Li21iv128.96 (12)H193—C19—H192109.5
C23—N24—Li21iv108.47 (12)C16—C20—H203109.5
N24—C25—C26120.45 (13)C16—C20—H201109.5
N24—C25—C29117.55 (14)H203—C20—H201109.5
C26—C25—C29122.00 (14)C16—C20—H202109.5
N21—C26—C25120.07 (13)H203—C20—H202109.5
N21—C26—C30118.02 (14)H201—C20—H202109.5
C25—C26—C30121.90 (14)Li11—O15—H151127 (2)
O21—C27—O22122.16 (15)Li21—O25—H251125.5 (18)
O21—C27—C22118.70 (14)Li21—O25—H252126 (2)
O22—C27—C22119.14 (14)H251—O25—H252107 (3)
O21—C27—Li2135.08 (10)O15—Li11—O11i112.18 (11)
O22—C27—Li21157.24 (13)O15—Li11—O11112.18 (11)
C22—C27—Li2183.62 (10)O11i—Li11—O11135.6 (2)
O24—C28—O23121.55 (15)O15—Li11—N11i101.08 (10)
O24—C28—C23118.69 (14)O11i—Li11—N11i74.72 (6)
O23—C28—C23119.74 (14)O11—Li11—N11i96.81 (8)
C25—C29—H291109.5O15—Li11—N11101.08 (10)
C25—C29—H293109.5O11i—Li11—N1196.80 (8)
H291—C29—H293109.5O11—Li11—N1174.72 (6)
C25—C29—H292109.5N11i—Li11—N11157.8 (2)
H291—C29—H292109.5O25—Li21—O21114.19 (17)
H293—C29—H292109.5O25—Li21—O24iii116.34 (16)
C26—C30—H302109.5O21—Li21—O24iii129.46 (17)
C26—C30—H301109.5O25—Li21—N2199.20 (13)
H302—C30—H301109.5O21—Li21—N2176.11 (10)
C26—C30—H303109.5O24iii—Li21—N2196.95 (13)
H302—C30—H303109.5O25—Li21—N24iii90.02 (12)
H301—C30—H303109.5O21—Li21—N24iii104.63 (13)
C17—O11—Li11124.56 (11)O24iii—Li21—N24iii74.42 (11)
C17—O12—H121111.3 (13)N21—Li21—N24iii169.57 (15)
C18—O13—Li12124.25 (12)O25—Li21—C27114.39 (14)
C18—O14—H121110.6 (12)O21—Li21—C2721.28 (6)
C16—N11—C12119.61 (13)O24iii—Li21—C27124.99 (14)
C16—N11—Li11129.62 (11)N21—Li21—C2754.84 (7)
C12—N11—Li11110.74 (10)N24iii—Li21—C27125.35 (12)
N11—C12—C13120.10 (12)O16—Li12—O13116.26 (11)
N11—C12—C17111.24 (12)O16—Li12—O13ii116.26 (11)
C13—C12—C17128.65 (13)O13—Li12—O13ii127.5 (2)
N14—C13—C12120.07 (13)O16—Li12—N14ii90.44 (10)
N14—C13—C18111.17 (13)O13—Li12—N14ii104.99 (7)
C12—C13—C18128.75 (13)O13ii—Li12—N14ii74.61 (5)
C15—N14—C13119.52 (13)O16—Li12—N1490.44 (10)
C15—N14—Li12130.23 (11)O13—Li12—N1474.61 (5)
C13—N14—Li12107.90 (10)O13ii—Li12—N14104.99 (7)
N14—C15—C16120.53 (14)N14ii—Li12—N14179.1 (2)
N14—C15—C19117.49 (15)Li12—O16—H161123.6 (19)
C16—C15—C19121.98 (15)
D—H···AD—HH···AD···AD—H···A
O22—H221···O231.18 (3)1.19 (3)2.3693 (18)177 (3)
O12—H121···O141.14 (3)1.24 (3)2.3777 (18)177 (3)
O16—H161···O22v0.82 (3)2.01 (3)2.8268 (18)173 (3)
O15—H151···O24v0.85 (3)2.22 (4)2.989 (2)150 (3)
O15—H151···O23v0.85 (3)2.34 (3)3.1201 (14)153 (3)
O25—H251···O12vi0.91 (3)2.03 (3)2.938 (2)174 (2)
O25—H252···O14ii0.80 (3)2.20 (3)2.975 (2)163 (3)
O25—H252···O13ii0.80 (3)2.43 (3)3.078 (2)139 (3)
Table 1

Selected bond lengths (Å)

Li11—O151.915 (4)
Li11—O111.9473 (19)
Li11—O11i 1.9472 (19)
Li11—N11i 2.3128 (14)
Li11—N112.3129 (14)
Li12—O161.884 (4)
Li12—O131.920 (2)
Li12—O13ii 1.920 (2)
Li12—N14ii 2.3446 (12)
Li12—N142.3446 (12)
Li21—O251.902 (3)
Li21—O211.923 (3)
Li21—O24iii 1.949 (3)
Li21—N212.276 (3)
Li21—N24iii 2.324 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O22—H221⋯O231.18 (3)1.19 (3)2.3693 (18)177 (3)
O12—H121⋯O141.14 (3)1.24 (3)2.3777 (18)177 (3)
O16—H161⋯O22iv 0.82 (3)2.01 (3)2.8268 (18)173 (3)
O15—H151⋯O24iv 0.85 (3)2.22 (4)2.989 (2)150 (3)
O15—H151⋯O23iv 0.85 (3)2.34 (3)3.1201 (14)153 (3)
O25—H251⋯O12v 0.91 (3)2.03 (3)2.938 (2)174 (2)
O25—H252⋯O14ii 0.80 (3)2.20 (3)2.975 (2)163 (3)
O25—H252⋯O13ii 0.80 (3)2.43 (3)3.078 (2)139 (3)

Symmetry codes: (ii) ; (iv) ; (v) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(aqualithium)-μ-3-carboxypyrazine-2-carboxylato-κO,N:O,N] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

3.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

4.  Poly[μ-aqua-diaqua-(μ(2)-pyrazine-2,3-dicarboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmis Guven
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

5.  Poly[(μ4-3-carb-oxy-pyrazine-2-carboxyl-ato)(μ4-nitrato)dilithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-19
  5 in total

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