Literature DB >> 21200587

Poly[diaqua(μ(2)-3-carboxypyrazine-2-carboxylato)(μ(2)-pyrazine-2,3-dicarboxylic acid)potassium(I)].

Mustafa Tombul, Kutalmis Güven, Ingrid Svoboda.   

Abstract

The structural unit of the title compound, [K(C(6)H(3)N(2)O(4))(C(6)H(4)N(2)O(4))(H(2)O)(2)](n), consists of one potassium cation, one hydrogen pyrazine-2,3-dicarboxyl-ate anion, one pyrazine-2,3-dicarboxylic acid mol-ecule and two water mol-ecules; this is twice the asymmetric unit, since the potassium cation lies on an inversion centre. Each anion or acid mol-ecule is linked to two potassium cations, while the potassium cation has contacts to four symmetry-equivalent organic ligands, with two different coordination modes towards this cation. In addition, each potassium cation is coordinated by two water O atoms, raising the coordination number to eight. One of the carboxyl groups of the acid retains its H atom, which forms a hydrogen bond to a coordinated water mol-ecule. The other carboxyl group is deprotonated in half of the ligands and protonated in the other half, taking part in a strong O-H⋯O hydrogen bond disordered over an inversion centre. The stabilization of the crystal structure is further assisted by O-H⋯O and O-H⋯N hydrogen bonds in which water acts as the donor.

Entities:  

Year:  2007        PMID: 21200587      PMCID: PMC2915164          DOI: 10.1107/S1600536807066202

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Clegg & Liddle (2004 ▶); Cuesta et al. (2003 ▶); Ptasiewicz-Bak & Leciejewicz (1997a ▶,b ▶); Starosta & Leciejewicz (2005 ▶); Takusagawa & Shimada (1973 ▶); Tombul et al. (2006 ▶, 2007 ▶). Richard et al. (1973 ▶). Nepveu et al. (1993 ▶).

Experimental

Crystal data

[K(C6H3N2O4)(C6H4N2O4)(H2O)2] M = 410.35 Triclinic, a = 7.4171 (11) Å b = 8.0252 (12) Å c = 8.1153 (13) Å α = 68.39 (2)° β = 81.18 (1)° γ = 64.24 (2)° V = 404.43 (13) Å3 Z = 1 Mo Kα radiation μ = 0.40 mm−1 T = 303 (2) K 0.40 × 0.36 × 0.14 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with Sapphire CCD detector Absorption correction: numerical [using a multifaceted crystal model based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.858, T max = 0.947 4541 measured reflections 1639 independent reflections 1357 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.089 S = 0.82 1639 reflections 141 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶).; software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807066202/cf2158sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807066202/cf2158Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[K(C6H3N2O4)(C6H4N2O4)(H2O)2]Z = 1
Mr = 410.35F000 = 210
Triclinic, P1Dx = 1.685 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.4171 (11) ÅCell parameters from 2574 reflections
b = 8.0252 (12) Åθ = 2.7–27.5º
c = 8.1153 (13) ŵ = 0.40 mm1
α = 68.39 (2)ºT = 303 (2) K
β = 81.18 (1)ºPrism, colorless
γ = 64.24 (2)º0.40 × 0.36 × 0.14 mm
V = 404.43 (13) Å3
Oxford Diffraction Xcalibur diffractometer with Sapphire CCD detector1639 independent reflections
Radiation source: Enhance (Mo) X-ray Source1357 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
Detector resolution: 8.4012 pixels mm-1θmax = 26.4º
T = 303(2) Kθmin = 2.7º
ω and φ scansh = −9→9
Absorption correction: numerical[using a multifaceted crystal model based on expressions derived by Clark & Reid (1995)]k = −9→9
Tmin = 0.858, Tmax = 0.947l = −10→10
4541 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089  w = 1/[σ2(Fo2) + (0.0664P)2 + 0.1925P] where P = (Fo2 + 2Fc2)/3
S = 0.82(Δ/σ)max < 0.001
1639 reflectionsΔρmax = 0.30 e Å3
141 parametersΔρmin = −0.24 e Å3
3 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.043 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.2243 (2)−0.0442 (2)0.6857 (2)0.0317 (4)
H1A0.0951−0.01400.65520.038*
C20.3500 (2)−0.2386 (2)0.7694 (2)0.0335 (4)
H20.3046−0.33580.79050.040*
C30.5925 (2)−0.1443 (2)0.78702 (18)0.0249 (3)
C40.4681 (2)0.0507 (2)0.69820 (18)0.0236 (3)
C50.5421 (2)0.2104 (2)0.6487 (2)0.0289 (3)
C60.8033 (2)−0.2156 (2)0.8493 (2)0.0277 (3)
N10.28268 (17)0.10040 (18)0.64756 (16)0.0281 (3)
N20.53451 (18)−0.28984 (18)0.82048 (17)0.0310 (3)
O10.41860 (17)0.38402 (16)0.56448 (17)0.0394 (3)
H10.476 (7)0.455 (6)0.533 (5)0.039 (11)*0.50
O20.94651 (16)−0.29530 (18)0.77161 (16)0.0392 (3)
O30.14687 (17)0.66521 (18)0.15762 (17)0.0407 (3)
H3A0.195 (3)0.727 (3)0.190 (3)0.057 (6)*
H3B0.245 (2)0.563 (2)0.149 (3)0.057 (6)*
O40.71570 (17)0.16296 (17)0.68558 (19)0.0476 (4)
O50.80518 (19)−0.1943 (2)1.00104 (17)0.0504 (4)
H50.925 (4)−0.241 (4)1.038 (3)0.065 (7)*
K10.00000.50000.50000.0471 (2)
U11U22U33U12U13U23
C10.0200 (7)0.0376 (8)0.0396 (8)−0.0125 (6)−0.0024 (6)−0.0137 (7)
C20.0279 (8)0.0336 (8)0.0424 (9)−0.0165 (6)0.0010 (6)−0.0120 (7)
C30.0220 (7)0.0276 (7)0.0250 (7)−0.0091 (6)−0.0002 (5)−0.0101 (5)
C40.0213 (7)0.0259 (7)0.0239 (7)−0.0076 (6)−0.0016 (5)−0.0107 (5)
C50.0255 (7)0.0271 (7)0.0356 (8)−0.0088 (6)−0.0030 (6)−0.0134 (6)
C60.0236 (7)0.0241 (7)0.0329 (8)−0.0082 (6)−0.0042 (6)−0.0075 (6)
N10.0210 (6)0.0293 (6)0.0322 (7)−0.0067 (5)−0.0031 (5)−0.0116 (5)
N20.0253 (6)0.0274 (6)0.0377 (7)−0.0107 (5)−0.0017 (5)−0.0079 (5)
O10.0301 (6)0.0261 (6)0.0558 (8)−0.0121 (5)−0.0066 (5)−0.0039 (5)
O20.0221 (5)0.0465 (7)0.0535 (7)−0.0108 (5)0.0004 (5)−0.0257 (6)
O30.0316 (6)0.0372 (7)0.0555 (8)−0.0072 (5)−0.0149 (5)−0.0206 (6)
O40.0308 (6)0.0333 (6)0.0824 (10)−0.0118 (5)−0.0192 (6)−0.0174 (6)
O50.0297 (6)0.0743 (9)0.0417 (7)−0.0057 (6)−0.0116 (5)−0.0282 (6)
K10.0338 (3)0.0339 (3)0.0456 (3)−0.0005 (2)−0.0012 (2)0.0006 (2)
C1—N11.327 (2)N1—K12.8655 (15)
C1—C21.383 (2)O1—K12.8995 (12)
C1—H1A0.9300O1—H10.80 (4)
C2—N21.331 (2)O3—K12.8771 (15)
C2—H20.9300O3—H3A0.85 (2)
C3—N21.3381 (19)O3—H3B0.848 (9)
C3—C41.392 (2)O5—H50.86 (3)
C3—C61.5097 (19)K1—N1i2.8655 (15)
C4—N11.3397 (18)K1—O3i2.8771 (15)
C4—C51.507 (2)K1—O1i2.8995 (12)
C5—O41.2248 (18)K1—O2ii3.0897 (13)
C5—O11.2760 (19)K1—O2iii3.0897 (13)
C6—O21.1983 (19)K1—H3A3.09 (2)
C6—O51.3073 (19)
N1—C1—C2121.91 (13)N1i—K1—O372.84 (4)
N1—C1—H1A119.0N1—K1—O3107.16 (4)
C2—C1—H1A119.0O3i—K1—O3180.0
N2—C2—C1121.64 (14)N1i—K1—O1i55.92 (4)
N2—C2—H2119.2N1—K1—O1i124.08 (4)
C1—C2—H2119.2O3i—K1—O1i76.02 (4)
N2—C3—C4121.58 (13)O3—K1—O1i103.98 (4)
N2—C3—C6113.19 (12)N1i—K1—O1124.08 (4)
C4—C3—C6125.20 (13)N1—K1—O155.92 (4)
N1—C4—C3121.03 (13)O3i—K1—O1103.98 (4)
N1—C4—C5118.15 (13)O3—K1—O176.02 (4)
C3—C4—C5120.76 (13)O1i—K1—O1180.000 (1)
O4—C5—O1125.67 (14)N1i—K1—O2ii107.44 (4)
O4—C5—C4118.05 (13)N1—K1—O2ii72.56 (4)
O1—C5—C4116.21 (13)O3i—K1—O2ii116.00 (3)
O2—C6—O5126.25 (14)O3—K1—O2ii64.00 (3)
O2—C6—C3121.86 (13)O1i—K1—O2ii81.35 (3)
O5—C6—C3111.63 (13)O1—K1—O2ii98.65 (4)
C1—N1—C4117.01 (13)N1i—K1—O2iii72.56 (4)
C1—N1—K1119.50 (9)N1—K1—O2iii107.44 (4)
C4—N1—K1123.12 (9)O3i—K1—O2iii64.00 (3)
C2—N2—C3116.78 (13)O3—K1—O2iii116.00 (3)
C5—O1—K1125.42 (10)O1i—K1—O2iii98.65 (4)
C5—O1—H1109 (3)O1—K1—O2iii81.35 (4)
K1—O1—H1126 (3)O2ii—K1—O2iii180.00 (2)
C6—O2—K1iv132.38 (10)N1i—K1—H3A70.6 (3)
K1—O3—H3A96.3 (15)N1—K1—H3A109.4 (3)
K1—O3—H3B99.8 (15)O3i—K1—H3A164.1 (2)
H3A—O3—H3B106.6 (13)O3—K1—H3A15.9 (2)
C6—O5—H5111.0 (16)O1i—K1—H3A112.9 (3)
N1i—K1—N1180.0O1—K1—H3A67.1 (3)
N1i—K1—O3i107.16 (4)O2ii—K1—H3A79.1 (2)
N1—K1—O3i72.84 (4)O2iii—K1—H3A100.9 (2)
N1—C1—C2—N21.9 (2)O4—C5—O1—K1−175.29 (12)
N2—C3—C4—N12.1 (2)C4—C5—O1—K17.78 (19)
C6—C3—C4—N1179.87 (13)O5—C6—O2—K1iv154.68 (13)
N2—C3—C4—C5−174.99 (13)C3—C6—O2—K1iv−19.1 (2)
C6—C3—C4—C52.8 (2)C1—N1—K1—O3i61.01 (11)
N1—C4—C5—O4−175.63 (14)C4—N1—K1—O3i−111.76 (11)
C3—C4—C5—O41.5 (2)C1—N1—K1—O3−118.99 (11)
N1—C4—C5—O11.5 (2)C4—N1—K1—O368.24 (11)
C3—C4—C5—O1178.67 (13)C1—N1—K1—O1i1.94 (12)
N2—C3—C6—O274.92 (18)C4—N1—K1—O1i−170.83 (10)
C4—C3—C6—O2−103.06 (18)C1—N1—K1—O1−178.06 (12)
N2—C3—C6—O5−99.65 (16)C4—N1—K1—O19.17 (10)
C4—C3—C6—O582.37 (18)C1—N1—K1—O2ii−64.29 (11)
C2—C1—N1—C4−1.8 (2)C4—N1—K1—O2ii122.94 (11)
C2—C1—N1—K1−174.99 (12)C1—N1—K1—O2iii115.71 (11)
C3—C4—N1—C1−0.1 (2)C4—N1—K1—O2iii−57.06 (11)
C5—C4—N1—C1177.00 (12)C5—O1—K1—N1i171.23 (11)
C3—C4—N1—K1172.82 (10)C5—O1—K1—N1−8.77 (11)
C5—C4—N1—K1−10.06 (17)C5—O1—K1—O3i48.85 (13)
C1—C2—N2—C30.0 (2)C5—O1—K1—O3−131.15 (13)
C4—C3—N2—C2−1.9 (2)C5—O1—K1—O2ii−70.80 (13)
C6—C3—N2—C2−179.99 (12)C5—O1—K1—O2iii109.20 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O4v0.85 (2)1.899 (10)2.7334 (17)167 (2)
O3—H3B···N2ii0.848 (9)2.035 (10)2.8701 (19)168 (2)
O5—H5···O3vi0.86 (3)1.76 (3)2.5994 (17)168 (2)
O1—H1···O1v0.80 (4)1.68 (4)2.480 (2)171 (5)
Table 1

Selected bond lengths (Å)

N1—K12.8655 (15)
O1—K12.8995 (12)
O3—K12.8771 (15)
K1—N1i2.8655 (15)
K1—O3i2.8771 (15)
K1—O1i2.8995 (12)
K1—O2ii3.0897 (13)
K1—O2iii3.0897 (13)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O4iv0.85 (2)1.899 (10)2.7334 (17)167 (2)
O3—H3B⋯N2ii0.848 (9)2.035 (10)2.8701 (19)168 (2)
O5—H5⋯O3v0.86 (3)1.76 (3)2.5994 (17)168 (2)
O1—H1⋯O1iv0.80 (4)1.68 (4)2.480 (2)171 (5)

Symmetry codes: (ii) ; (iv) ; (v) .

  1 in total

1.  Potassium N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)-(S)-aspartate N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)-(S)-aspartic acid 4.88-hydrate: a two-dimensional coordination polymer.

Authors:  Rafael Cuesta; Christopher Glidewell; Rafael López; John N Low
Journal:  Acta Crystallogr C       Date:  2003-07-22       Impact factor: 1.172

  1 in total
  5 in total

1.  catena-Poly[[diaqua-rubidium(I)](μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)(μ(2)-pyrazine-2,3-dicarboxylic acid)].

Authors:  Mustafa Tombul; Kutalmis Guven
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-23

2.  Erratum: Poly[[diaqua-caesium(II)]bis-(μ(3)-3-carboxy-pyrazine-2-carboxyl-ato)]. Corrigendum.

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-22

3.  Poly[triaquabis-(μ(2)-3-carboxy-pyrazine-2-carboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmış Güven; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

4.  Poly[μ-aqua-diaqua-(μ(2)-pyrazine-2,3-dicarboxyl-ato)dilithium(I)].

Authors:  Mustafa Tombul; Kutalmis Guven
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28

5.  (2,2'-Bipyridine)bis-(3-carboxy-pyrazine-2-carboxyl-ato)copper(II) dihydrate.

Authors:  Hossein Aghabozorg; Mahdieh Parvizi; Elahe Sadrkhanlou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.