Literature DB >> 21577586

dl-Asparaginium nitrate.

Nabila Moussa Slimane, Aouatef Cherouana, Lamia Bendjeddou, Slimane Dahaoui, Claude Lecomte.   

Abstract

In the title compound, C(4)H(9)N(2)O(3) (+)·NO(3) (-), alternatively called (1RS)-2-carbamoyl-1-carboxy-ethanaminium nitrate, the asymmetric unit comprises one asparaginium cation and one nitrate anion. The strongest cation-cation O-H⋯O hydrogen bond in the structure, together with other strong cation-cation N-H⋯O hydrogen bonds, generates a succession of infinite chains of R(2) (2)(8) rings along the b axis. Additional cation-cation C-H⋯O hydrogen bonds link these chains into two-dimensional layers formed by alternating R(4) (4)(24) and R(4) (2)(12) rings. Connections between these layers are provided by the strong cation-anion N-H⋯O hydrogen bonds, as well as by one weak C-H⋯O inter-action, thus forming a three-dimensional network. Some of the cation-anion N-H⋯O hydrogen bonds are bifurcated of the type D-H⋯(A(1),A(2)).

Entities:  

Year:  2009        PMID: 21577586      PMCID: PMC2970112          DOI: 10.1107/S1600536809031730

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

dl-Asparagine has been used in growth media for bacteria, see: Gerhardt & Wilson (1948 ▶); Palleroni et al. (1973 ▶); Wagtendonk et al. (1963 ▶). For related structures, see Aarthy et al. (2005 ▶); Anitha et al. (2005 ▶); Arnold et al. (2000 ▶); Flaig et al. (2002 ▶); Kartha & de Vries (1961 ▶); Ramanadham et al. (1972 ▶); Smirnova et al. (1990 ▶); Verbist et al. (1972 ▶); Wang et al. (1985 ▶); Weisinger-Lewin et al. (1989 ▶); Yamada et al. (2007 ▶). For hydrogen bonding, see: Desiraju & Steiner (1999 ▶). For hydrogen-bond morifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C4H9N2O3 +·NO3 M = 195.14 Monoclinic, a = 7.923 (2) Å b = 9.608 (2) Å c = 10.613 (3) Å β = 107.105 (2)° V = 772.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 100 K 0.30 × 0.20 × 0.09 mm

Data collection

Oxford Diffraction Xcalibur–Sapphire2 CCD diffractometer Absorption correction: gaussian (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.966, T max = 0.991 19446 measured reflections 2236 independent reflections 1804 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.087 S = 1.07 2236 reflections 136 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031730/fb2157sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031730/fb2157Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H9N2O3+·NO3F(000) = 408
Mr = 195.14Dx = 1.679 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 19446 reflections
a = 7.923 (2) Åθ = 2.9–30.0°
b = 9.608 (2) ŵ = 0.16 mm1
c = 10.613 (3) ÅT = 100 K
β = 107.105 (2)°Prism, colorless
V = 772.2 (3) Å30.3 × 0.2 × 0.09 mm
Z = 4
Oxford Diffraction Xcalibur–Sapphire2 CCD diffractometer2236 independent reflections
Radiation source: fine-focus sealed tube1804 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 30.0°, θmin = 2.9°
Absorption correction: gaussian (CrysAlis RED; Oxford Diffraction, 2008)h = −11→11
Tmin = 0.966, Tmax = 0.991k = −13→13
19446 measured reflectionsl = −11→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: difference Fourier map
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0466P)2 + 0.1163P] where P = (Fo2 + 2Fc2)/3
2236 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.35366 (11)1.04131 (8)0.62255 (8)0.0171 (2)
H10.403 (2)1.0991 (17)0.6820 (16)0.0256*
O20.21545 (11)0.96178 (8)0.76602 (8)0.0150 (2)
O30.46509 (10)0.71971 (8)0.71175 (8)0.0144 (2)
N20.07508 (13)0.74096 (10)0.61109 (10)0.0133 (3)
H1N0.0164 (19)0.7751 (15)0.6650 (14)0.0158*
H2N0.1526 (19)0.6789 (15)0.6612 (14)0.0158*
H3N0.0026 (19)0.6923 (15)0.5440 (14)0.0158*
N30.57418 (14)0.66187 (11)0.54436 (11)0.0172 (3)
H4N0.5623 (19)0.6635 (16)0.4621 (16)0.0207*
H5N0.659 (2)0.6100 (16)0.5979 (15)0.0207*
C10.24959 (14)0.95636 (10)0.66154 (11)0.0118 (3)
C20.16701 (14)0.84965 (10)0.55565 (10)0.0111 (3)
H20.075260.898880.484450.0134*
C30.29888 (14)0.78621 (11)0.49291 (10)0.0129 (3)
H30.342260.859860.444990.0154*
H40.237980.715210.427750.0154*
C40.45449 (14)0.71962 (10)0.59194 (11)0.0117 (3)
O40.10171 (10)0.28059 (8)0.69646 (8)0.0164 (2)
O50.18243 (12)0.48467 (9)0.78126 (9)0.0228 (3)
O60.17667 (12)0.44085 (9)0.57939 (9)0.0204 (3)
N10.15474 (12)0.40279 (9)0.68709 (9)0.0132 (3)
U11U22U33U12U13U23
O10.0219 (4)0.0149 (4)0.0156 (4)−0.0083 (3)0.0074 (3)−0.0035 (3)
O20.0182 (4)0.0129 (3)0.0149 (4)−0.0026 (3)0.0064 (3)−0.0031 (3)
O30.0147 (4)0.0153 (4)0.0131 (4)0.0045 (3)0.0040 (3)0.0021 (3)
N20.0129 (4)0.0116 (4)0.0153 (5)−0.0020 (3)0.0042 (4)−0.0034 (3)
N30.0171 (5)0.0193 (5)0.0168 (5)0.0066 (4)0.0074 (4)0.0029 (4)
C10.0105 (5)0.0090 (4)0.0144 (5)0.0017 (3)0.0012 (4)0.0007 (4)
C20.0113 (5)0.0096 (4)0.0117 (5)0.0008 (3)0.0021 (4)−0.0004 (3)
C30.0139 (5)0.0125 (4)0.0117 (5)0.0029 (4)0.0030 (4)0.0000 (4)
C40.0119 (5)0.0083 (4)0.0151 (5)−0.0003 (3)0.0043 (4)0.0010 (4)
O40.0158 (4)0.0115 (4)0.0222 (4)−0.0018 (3)0.0061 (3)−0.0004 (3)
O50.0249 (5)0.0228 (4)0.0197 (4)−0.0048 (3)0.0049 (4)−0.0115 (3)
O60.0266 (5)0.0189 (4)0.0205 (4)0.0002 (3)0.0142 (4)0.0018 (3)
N10.0104 (4)0.0127 (4)0.0164 (5)−0.0004 (3)0.0037 (3)−0.0027 (3)
O1—C11.3107 (16)N2—H3N0.903 (14)
O2—C11.2173 (16)N2—H2N0.907 (15)
O3—C41.2494 (16)N3—H5N0.893 (16)
O1—H10.845 (16)N3—H4N0.850 (16)
O4—N11.2608 (14)C1—C21.5198 (17)
O5—N11.2397 (15)C2—C31.5218 (18)
O6—N11.2599 (15)C3—C41.5072 (18)
N2—C21.4898 (17)C2—H21.0000
N3—C41.3205 (18)C3—H30.9900
N2—H1N0.899 (15)C3—H40.9900
C1—O1—H1111.7 (11)C1—C2—C3113.09 (9)
H2N—N2—H3N106.6 (13)N2—C2—C3111.74 (8)
C2—N2—H2N111.5 (10)N2—C2—C1109.57 (9)
H1N—N2—H3N111.3 (14)C2—C3—C4113.02 (9)
C2—N2—H1N113.6 (9)N3—C4—C3116.35 (10)
C2—N2—H3N108.9 (9)O3—C4—N3123.27 (11)
H1N—N2—H2N104.7 (13)O3—C4—C3120.38 (10)
C4—N3—H4N120.7 (11)N2—C2—H2107.00
H4N—N3—H5N119.9 (15)C1—C2—H2107.00
C4—N3—H5N118.8 (10)C3—C2—H2107.00
O4—N1—O6118.68 (9)C2—C3—H4109.00
O5—N1—O6120.55 (9)H3—C3—H4108.00
O4—N1—O5120.76 (9)C4—C3—H3109.00
O1—C1—C2111.14 (9)C4—C3—H4109.00
O1—C1—O2126.15 (10)C2—C3—H3109.00
O2—C1—C2122.67 (10)
O1—C1—C2—N2170.37 (9)N2—C2—C3—C4−67.79 (11)
O1—C1—C2—C345.00 (12)C1—C2—C3—C456.40 (11)
O2—C1—C2—N2−11.93 (15)C2—C3—C4—O30.35 (14)
O2—C1—C2—C3−137.30 (11)C2—C3—C4—N3179.75 (10)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.845 (16)1.736 (16)2.571 (2)169.0 (17)
N2—H1N···O4ii0.899 (15)1.962 (15)2.822 (2)159.6 (13)
N2—H2N···O30.907 (15)2.406 (16)2.965 (2)119.9 (12)
N2—H2N···O50.907 (15)2.233 (14)3.024 (2)145.4 (13)
N2—H2N···O60.907 (15)2.474 (15)3.039 (2)120.7 (11)
N2—H3N···O4iii0.903 (14)2.454 (14)3.157 (2)135.0 (12)
N2—H3N···O6iii0.903 (14)2.068 (15)2.957 (2)168.3 (14)
N3—H5N···O2iv0.893 (16)2.064 (15)2.924 (2)161.4 (15)
C3—H3···O5v0.99002.36003.086 (2)130.00
C3—H4···O2v0.99002.39003.313 (2)156.00
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.845 (16)1.736 (16)2.571 (2)169.0 (17)
N2—H1N⋯O4ii0.899 (15)1.962 (15)2.822 (2)159.6 (13)
N2—H2N⋯O30.907 (15)2.406 (16)2.965 (2)119.9 (12)
N2—H2N⋯O50.907 (15)2.233 (14)3.024 (2)145.4 (13)
N2—H2N⋯O60.907 (15)2.474 (15)3.039 (2)120.7 (11)
N2—H3N⋯O4iii0.903 (14)2.454 (14)3.157 (2)135.0 (12)
N2—H3N⋯O6iii0.903 (14)2.068 (15)2.957 (2)168.3 (14)
N3—H5N⋯O2iv0.893 (16)2.064 (15)2.924 (2)161.4 (15)
C3—H3⋯O5v0.992.363.086 (2)130
C3—H4⋯O2v0.992.393.313 (2)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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