Literature DB >> 11916427

Intra- and intermolecular topological properties of amino acids: a comparative study of experimental and theoretical results.

R Flaig1, T Koritsanszky, B Dittrich, A Wagner, P Luger.   

Abstract

The charge densities rho(r) of the six amino acids L-Asn.H(2)O, DL-Glu.H(2)O, DL-Lys.HCl, DL-Pro.H(2)O, DL-Ser, and DL-Val were determined from high-resolution X-ray diffraction experiments at 100 K using synchrotron radiation and area detection (CCD) techniques. Bond topological parameters derived from these densities and from those of six additional amino acids published earlier are compared to each other and to the results of ab initio calculations. Experimental and theoretical properties for each chemically equivalent bond are in a fair agreement, and their variances are of similar magnitude. A noticeable outlier is the positive curvature of the density at the bond critical point, for which no correlation between the experimental and theoretical values can be established. The location of nonbonded valence shell charge concentrations derived from the crystalline densities scatter in a wider range than those obtained for the isolated molecules.

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Year:  2002        PMID: 11916427     DOI: 10.1021/ja011492y

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

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4.  Topological Properties of Chemical Bonds from Static and Dynamic Electron Densities.

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7.  Accurate Bond Lengths to Hydrogen Atoms from Single-Crystal X-ray Diffraction by Including Estimated Hydrogen ADPs and Comparison to Neutron and QM/MM Benchmarks.

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8.  Topological properties of hydrogen bonds and covalent bonds from charge densities obtained by the maximum entropy method (MEM).

Authors:  Jeanette Netzel; Sander van Smaalen
Journal:  Acta Crystallogr B       Date:  2009-08-28

9.  The active site of hen egg-white lysozyme: flexibility and chemical bonding.

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10.  Amino Acid Chiral Selection Via Weak Interactions in Stellar Environments: Implications for the Origin of Life.

Authors:  Michael A Famiano; Richard N Boyd; Toshitaka Kajino; Takashi Onaka; Yirong Mo
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