Literature DB >> 31280454

Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

Jared Rovny1, Robert L Blum1, J Patrick Loria2,3, Sean E Barrett4.   

Abstract

NMR relaxation dispersion experiments play a central role in exploring molecular motion over an important range of timescales, and are an example of a broader class of multidimensional NMR experiments that probe important biomolecules. However, resolving the spectral features of these experiments using the Fourier transform requires sampling the full Nyquist grid of data, making these experiments very costly in time. Practitioners often reduce the experiment time by omitting 1D experiments in the indirectly observed dimensions, and reconstructing the spectra using one of a variety of post-processing algorithms. In prior work, we described a fast, Fourier-based reconstruction method using iterated maps according to the Difference Map algorithm of Veit Elser (DiffMap). Here we describe coDiffMap, a new reconstruction method that is based on DiffMap, but which exploits the strong correlations between 2D data slices in a pseudo-3D experiment. We apply coDiffMap to reconstruct dispersion curves from an [Formula: see text] relaxation dispersion experiment, and demonstrate that the method provides fast reconstructions and accurate relaxation curves down to very low numbers of sparsely-sampled data points.

Entities:  

Keywords:  DiffMap; Difference map; Nonuniform sampling; Reconstruction; Sparse sampling; coDiffMap

Year:  2019        PMID: 31280454     DOI: 10.1007/s10858-019-00263-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

1.  Phase retrieval by iterated projections.

Authors:  Veit Elser
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2003-01       Impact factor: 2.129

2.  NMR characterization of the dynamics of biomacromolecules.

Authors:  Arthur G Palmer
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

3.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

4.  NMR data processing using iterative thresholding and minimum l(1)-norm reconstruction.

Authors:  Alan S Stern; David L Donoho; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2007-08-03       Impact factor: 2.229

5.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

6.  Phosphorus-31 MRI of hard and soft solids using quadratic echo line-narrowing.

Authors:  Merideth A Frey; Michael Michaud; Joshua N VanHouten; Karl L Insogna; Joseph A Madri; Sean E Barrett
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

Review 7.  Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-10-13       Impact factor: 9.795

8.  Pitfalls in compressed sensing reconstruction and how to avoid them.

Authors:  Alexandra Shchukina; Paweł Kasprzak; Rupashree Dass; Michał Nowakowski; Krzysztof Kazimierczuk
Journal:  J Biomol NMR       Date:  2016-11-11       Impact factor: 2.835

9.  Accelerating multidimensional NMR and MRI experiments using iterated maps.

Authors:  Merideth A Frey; Zachary M Sethna; Gregory A Manley; Suvrajit Sengupta; Kurt W Zilm; J Patrick Loria; Sean E Barrett
Journal:  J Magn Reson       Date:  2013-09-21       Impact factor: 2.229

10.  Glutamine Hydrolysis by Imidazole Glycerol Phosphate Synthase Displays Temperature Dependent Allosteric Activation.

Authors:  George P Lisi; Allen A Currier; J Patrick Loria
Journal:  Front Mol Biosci       Date:  2018-02-06
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  1 in total

1.  Reaching the sparse-sampling limit for reconstructing a single peak in a 2D NMR spectrum using iterated maps.

Authors:  Robert L Blum; Jared Rovny; J Patrick Loria; Sean E Barrett
Journal:  J Biomol NMR       Date:  2019-07-10       Impact factor: 2.835

  1 in total

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