Literature DB >> 21550797

Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question.

Jungwook Hwang1, Lynne E Maquat.   

Abstract

Nonsense-mediated mRNA decay (NMD) is a well-studied cellular quality-control pathway. It decreases the half-lives of eukaryotic mRNAs that aberrantly contain premature termination codons and additionally regulates an estimated 10-20% of normal transcripts. NMD factors play crucial roles during embryogenesis in many animals. Here, we review data indicating that NMD factors are required for proper embryogenesis by discussing the abnormal developmental phenotypes that result when the abundance of individual NMD factors is either downregulated or completely eliminated. We conclude that while NMD per se affects the embryogenesis of all animals, it is required to avoid embryonic lethality in only some animals. The critical roles of many NMD factors in other metabolic pathways undoubtedly also contribute to embryonic development if not viability.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21550797      PMCID: PMC3150509          DOI: 10.1016/j.gde.2011.03.008

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  81 in total

1.  SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.

Authors:  Akio Yamashita; Natsuko Izumi; Isao Kashima; Tetsuo Ohnishi; Bonnie Saari; Yukiko Katsuhata; Reiko Muramatsu; Tomoko Morita; Akihiro Iwamatsu; Takahisa Hachiya; Rie Kurata; Hisashi Hirano; Philip Anderson; Shigeo Ohno
Journal:  Genes Dev       Date:  2009-05-01       Impact factor: 11.361

Review 2.  The exosome: a multipurpose RNA-decay machine.

Authors:  Manfred Schmid; Torben Heick Jensen
Journal:  Trends Biochem Sci       Date:  2008-09-09       Impact factor: 13.807

Review 3.  Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors.

Authors:  Pamela Nicholson; Hasmik Yepiskoposyan; Stefanie Metze; Rodolfo Zamudio Orozco; Nicole Kleinschmidt; Oliver Mühlemann
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

Review 4.  The multiple lives of NMD factors: balancing roles in gene and genome regulation.

Authors:  Olaf Isken; Lynne E Maquat
Journal:  Nat Rev Genet       Date:  2008-09       Impact factor: 53.242

5.  Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe.

Authors:  Jikai Wen; Saverio Brogna
Journal:  EMBO J       Date:  2010-04-01       Impact factor: 11.598

6.  Human UPF1 participates in small RNA-induced mRNA downregulation.

Authors:  Hua Jin; Mi Ra Suh; Jinju Han; Kyu-Hyeon Yeom; Yoontae Lee; Inha Heo; Minju Ha; Seogang Hyun; V Narry Kim
Journal:  Mol Cell Biol       Date:  2009-08-24       Impact factor: 4.272

7.  SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs.

Authors:  Chenguang Gong; Yoon Ki Kim; Collynn F Woeller; Yalan Tang; Lynne E Maquat
Journal:  Genes Dev       Date:  2008-12-18       Impact factor: 11.361

8.  A UPF3-mediated regulatory switch that maintains RNA surveillance.

Authors:  Wai-Kin Chan; Angela D Bhalla; Hervé Le Hir; Lam Son Nguyen; Lulu Huang; Jozef Gécz; Miles F Wilkinson
Journal:  Nat Struct Mol Biol       Date:  2009-06-07       Impact factor: 15.369

9.  Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival.

Authors:  Nadine Wittkopp; Eric Huntzinger; Catrin Weiler; Jérôme Saulière; Steffen Schmidt; Mahendra Sonawane; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2009-05-04       Impact factor: 4.272

Review 10.  Common mechanisms of PIKK regulation.

Authors:  Courtney A Lovejoy; David Cortez
Journal:  DNA Repair (Amst)       Date:  2009-05-21
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  69 in total

Review 1.  NMD mechanism and the functions of Upf proteins in plant.

Authors:  Yiming Dai; Wenli Li; Lijia An
Journal:  Plant Cell Rep       Date:  2015-09-23       Impact factor: 4.570

2.  RNA degradation drives stem cell differentiation.

Authors:  Chih-Hong Lou; Eleen Y Shum; Miles F Wilkinson
Journal:  EMBO J       Date:  2015-04-21       Impact factor: 11.598

3.  The unfolded protein response is shaped by the NMD pathway.

Authors:  Rachid Karam; Chih-Hong Lou; Heike Kroeger; Lulu Huang; Jonathan H Lin; Miles F Wilkinson
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

Review 4.  RNA decay, evolution, and the testis.

Authors:  Samantha H Jones; Miles Wilkinson
Journal:  RNA Biol       Date:  2016-12-02       Impact factor: 4.652

Review 5.  Stress and the nonsense-mediated RNA decay pathway.

Authors:  Alexandra E Goetz; Miles Wilkinson
Journal:  Cell Mol Life Sci       Date:  2017-05-13       Impact factor: 9.261

Review 6.  Alternative polyadenylation: new insights from global analyses.

Authors:  Yongsheng Shi
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

7.  CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.

Authors:  Jérôme Saulière; Valentine Murigneux; Zhen Wang; Emélie Marquenet; Isabelle Barbosa; Olivier Le Tonquèze; Yann Audic; Luc Paillard; Hugues Roest Crollius; Hervé Le Hir
Journal:  Nat Struct Mol Biol       Date:  2012-10-21       Impact factor: 15.369

8.  Integrin α3β1 controls mRNA splicing that determines Cox-2 mRNA stability in breast cancer cells.

Authors:  Sita Subbaram; Scott P Lyons; Kimberly B Svenson; Sean L Hammond; Lorena G McCabe; Sridar V Chittur; C Michael DiPersio
Journal:  J Cell Sci       Date:  2014-01-16       Impact factor: 5.285

Review 9.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

10.  The role of nonsense-mediated decay in neuronal ceroid lipofuscinosis.

Authors:  Jake N Miller; Chun-Hung Chan; David A Pearce
Journal:  Hum Mol Genet       Date:  2013-03-28       Impact factor: 6.150

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