Literature DB >> 25899816

RNA degradation drives stem cell differentiation.

Chih-Hong Lou1, Eleen Y Shum1, Miles F Wilkinson2.   

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Year:  2015        PMID： 25899816      PMCID： PMC4475395          DOI： 10.15252/embj.201591631

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  11 in total

Review 1.  Roles for MYC in the establishment and maintenance of pluripotency.

Authors:  James Chappell; Stephen Dalton
Journal:  Cold Spring Harb Perspect Med       Date:  2013-12-01       Impact factor: 6.915

Review 2.  Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells.

Authors:  Christoph Schweingruber; Simone C Rufener; David Zünd; Akio Yamashita; Oliver Mühlemann
Journal:  Biochim Biophys Acta       Date:  2013-02-20

3.  RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.

Authors:  Lulu Huang; Chih-Hong Lou; Waikin Chan; Eleen Y Shum; Ada Shao; Erica Stone; Rachid Karam; Hye-Won Song; Miles F Wilkinson
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  The UPF3B gene, implicated in intellectual disability, autism, ADHD and childhood onset schizophrenia regulates neural progenitor cell behaviour and neuronal outgrowth.

Authors:  Lachlan A Jolly; Claire C Homan; Reuben Jacob; Simon Barry; Jozef Gecz
Journal:  Hum Mol Genet       Date:  2013-07-02       Impact factor: 6.150

Review 5.  Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question.

Authors:  Jungwook Hwang; Lynne E Maquat
Journal:  Curr Opin Genet Dev       Date:  2011-08       Impact factor: 5.578

6.  Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway.

Authors:  Chih H Lou; Ada Shao; Eleen Y Shum; Josh L Espinoza; Lulu Huang; Rachid Karam; Miles F Wilkinson
Journal:  Cell Rep       Date:  2014-02-13       Impact factor: 9.423

7.  SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs.

Authors:  Chenguang Gong; Yoon Ki Kim; Collynn F Woeller; Yalan Tang; Lynne E Maquat
Journal:  Genes Dev       Date:  2008-12-18       Impact factor: 11.361

8.  The TPR-containing domain within Est1 homologs exhibits species-specific roles in telomerase interaction and telomere length homeostasis.

Authors:  David C F Sealey; Aleksandar D Kostic; Catherine LeBel; Fiona Pryde; Lea Harrington
Journal:  BMC Mol Biol       Date:  2011-10-18       Impact factor: 2.946

9.  Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay.

Authors:  Tangliang Li; Yue Shi; Pei Wang; Luis Miguel Guachalla; Baofa Sun; Tjard Joerss; Yu-Sheng Chen; Marco Groth; Anja Krueger; Matthias Platzer; Yun-Gui Yang; Karl Lenhard Rudolph; Zhao-Qi Wang
Journal:  EMBO J       Date:  2015-03-14       Impact factor: 11.598

10.  Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.

Authors:  Jessica A Hurt; Alex D Robertson; Christopher B Burge
Journal:  Genome Res       Date:  2013-06-13       Impact factor: 9.043
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  10 in total

1.  The role of DNA methylation in human trophoblast differentiation.

Authors:  Teena K J B Gamage; William Schierding; Daniel Hurley; Peter Tsai; Jackie L Ludgate; Chandrakanth Bhoothpur; Lawrence W Chamley; Robert J Weeks; Erin C Macaulay; Joanna L James
Journal:  Epigenetics       Date:  2018-12-05       Impact factor: 4.528

Review 2.  Quality and quantity control of gene expression by nonsense-mediated mRNA decay.

Authors:  Tatsuaki Kurosaki; Maximilian W Popp; Lynne E Maquat
Journal:  Nat Rev Mol Cell Biol       Date:  2019-07       Impact factor: 94.444

Review 3.  Nonsense-mediated mRNA decay: a 'nonsense' pathway makes sense in stem cell biology.

Authors:  Xin Han; Yanling Wei; Hua Wang; Feilong Wang; Zhenyu Ju; Tangliang Li
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

4.  Decoding the differentiation of mesenchymal stem cells into mesangial cells at the transcriptomic level.

Authors:  Chee-Yin Wong; Yao-Ming Chang; Yu-Shuen Tsai; Wailap Victor Ng; Soon-Keng Cheong; Ting-Yu Chang; I-Fang Chung; Yang-Mooi Lim
Journal:  BMC Genomics       Date:  2020-07-07       Impact factor: 3.969

Review 5.  UPF1-Mediated RNA Decay-Danse Macabre in a Cloud.

Authors:  Daria Lavysh; Gabriele Neu-Yilik
Journal:  Biomolecules       Date:  2020-07-04

6.  Characterization of hemocytes and hematopoietic cells of a freshwater crayfish based on single-cell transcriptome analysis.

Authors:  Irene Söderhäll; Erik Fasterius; Charlotta Ekblom; Kenneth Söderhäll
Journal:  iScience       Date:  2022-08-02

7.  Human nonsense-mediated mRNA decay factor UPF2 interacts directly with eRF3 and the SURF complex.

Authors:  Andrés López-Perrote; Raquel Castaño; Roberto Melero; Teresa Zamarro; Hitomi Kurosawa; Tetsuo Ohnishi; Akiko Uchiyama; Kyoko Aoyagi; Gretel Buchwald; Naoyuki Kataoka; Akio Yamashita; Oscar Llorca
Journal:  Nucleic Acids Res       Date:  2016-01-05       Impact factor: 16.971

8.  The RNA helicase DHX34 functions as a scaffold for SMG1-mediated UPF1 phosphorylation.

Authors:  Roberto Melero; Nele Hug; Andrés López-Perrote; Akio Yamashita; Javier F Cáceres; Oscar Llorca
Journal:  Nat Commun       Date:  2016-02-04       Impact factor: 14.919

Review 9.  An RNA decay factor wears a new coat: UPF3B modulates translation termination.

Authors:  Zhaofeng Gao; Miles Wilkinson
Journal:  F1000Res       Date:  2017-12-20

10.  Efficient depletion of ribosomal RNA for RNA sequencing in planarians.

Authors:  Iana V Kim; Eric J Ross; Sascha Dietrich; Kristina Döring; Alejandro Sánchez Alvarado; Claus-D Kuhn
Journal:  BMC Genomics       Date:  2019-11-29       Impact factor: 3.969
  10 in total

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