Literature DB >> 18786828

The exosome: a multipurpose RNA-decay machine.

Manfred Schmid1, Torben Heick Jensen.   

Abstract

The diversity of RNAs in the cell continues to amaze. In addition to the 'classic' species of mRNA, tRNA, rRNA, snRNA and snoRNA, it is now clear that the majority of genomic information is transcribed into RNA molecules. The resulting complexity of the transcriptome poses a serious challenge to cells because they must manage numerous RNA-processing reactions, yet, at the same time, eradicate surplus and aberrant material without destroying functional RNA. The 3'-->5' exonucleolytic RNA exosome is emerging as a major facilitator of such events. Recent structural and functional data regarding this fascinating complex and its many co-factors illuminate its diverse biochemical properties and indicate mechanisms by which RNAs are targeted for either processing or degradation.

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Year:  2008        PMID: 18786828     DOI: 10.1016/j.tibs.2008.07.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  125 in total

1.  The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.

Authors:  Rafal Tomecki; Maiken S Kristiansen; Søren Lykke-Andersen; Aleksander Chlebowski; Katja M Larsen; Roman J Szczesny; Karolina Drazkowska; Agnieszka Pastula; Jens S Andersen; Piotr P Stepien; Andrzej Dziembowski; Torben Heick Jensen
Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

2.  Chromatin remodeling around nucleosome-free regions leads to repression of noncoding RNA transcription.

Authors:  Adam N Yadon; Daniel Van de Mark; Ryan Basom; Jeffrey Delrow; Iestyn Whitehouse; Toshio Tsukiyama
Journal:  Mol Cell Biol       Date:  2010-08-30       Impact factor: 4.272

3.  Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.

Authors:  Shimyn Slomovic; Ella Fremder; Raymond H G Staals; Ger J M Pruijn; Gadi Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

Review 4.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

Review 5.  The nuclear pore complex: bridging nuclear transport and gene regulation.

Authors:  Caterina Strambio-De-Castillia; Mario Niepel; Michael P Rout
Journal:  Nat Rev Mol Cell Biol       Date:  2010-07       Impact factor: 94.444

6.  Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance.

Authors:  John R Weir; Fabien Bonneau; Jendrik Hentschel; Elena Conti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

7.  Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast.

Authors:  Olivier St-André; Caroline Lemieux; Audrey Perreault; Daniel H Lackner; Jürg Bähler; François Bachand
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

8.  The RNA exosome shapes the expression of key protein-coding genes.

Authors:  Mengjun Wu; Evdoxia Karadoulama; Marta Lloret-Llinares; Jerome Olivier Rouviere; Christian Skov Vaagensø; Martin Moravec; Bingnan Li; Jingwen Wang; Guifen Wu; Maria Gockert; Vicent Pelechano; Torben Heick Jensen; Albin Sandelin
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

9.  In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.

Authors:  Odil Porrua; Fruzsina Hobor; Jocelyne Boulay; Karel Kubicek; Yves D'Aubenton-Carafa; Rajani Kanth Gudipati; Richard Stefl; Domenico Libri
Journal:  EMBO J       Date:  2012-08-28       Impact factor: 11.598

10.  Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

Authors:  Nathan N Lee; Venkata R Chalamcharla; Francisca Reyes-Turcu; Sameet Mehta; Martin Zofall; Vanivilasini Balachandran; Jothy Dhakshnamoorthy; Nitika Taneja; Soichiro Yamanaka; Ming Zhou; Shiv I S Grewal
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

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