Literature DB >> 12409618

Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

Peter O'Neill1, David L Stevens, Elspeth F Garman.   

Abstract

Radiation-induced degradation of protein or DNA samples by synchrotron radiation is an inherent problem in X-ray crystallography, especially at the 'brighter' light sources. This short review gives a radiation chemical perspective on some of the physical and chemical processes that need to be considered in understanding potential pathways leading to the gradual degradation of the samples. Under the conditions used for X-ray crystallography at a temperature of <100 K in the presence of cryoprotectant agents, the majority of radiation damage of the protein samples arises from direct ionization of the amino acid residues and their associated water molecules. Some of the chemical processes that may occur at these protein centres, such as bond scission, are discussed. Several approaches are discussed that may reduce radiation damage, using agents known from radiation chemistry to minimize radical-induced degradation of the sample.

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Year:  2002        PMID: 12409618     DOI: 10.1107/s0909049502014553

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  30 in total

1.  Crystallographic study of a MATE transporter presents a difficult case in structure determination with low-resolution, anisotropic data and crystal twinning.

Authors:  Jindrich Symersky; Yi Guo; Jimin Wang; Min Lu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

2.  Synchrotron Radiation Provides a Plausible Explanation for the Generation of a Free Radical Adduct of Thioxolone in Mutant Carbonic Anhydrase II.

Authors:  Katherine H Sippel; Caroli Genis; Lakshmanan Govindasamy; Mavis Agbandje-McKenna; James J Kiddle; Brian C Tripp; Robert McKenna
Journal:  J Phys Chem Lett       Date:  2010-10-07       Impact factor: 6.475

3.  Distortion of flavin geometry is linked to ligand binding in cholesterol oxidase.

Authors:  Artem Y Lyubimov; Kathryn Heard; Hui Tang; Nicole S Sampson; Alice Vrielink
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

4.  Measurements of accurate x-ray scattering data of protein solutions using small stationary sample cells.

Authors:  Xinguo Hong; Quan Hao
Journal:  Rev Sci Instrum       Date:  2009-01       Impact factor: 1.523

5.  Cryoradiolytic reduction of heme proteins: Maximizing dose dependent yield.

Authors:  Ilia G Denisov; Doreen C Victoria; Stephen G Sligar
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2007-04       Impact factor: 2.858

6.  Energy dependence of site-specific radiation damage in protein crystals.

Authors:  Christina Homer; Laura Cooper; Ana Gonzalez
Journal:  J Synchrotron Radiat       Date:  2011-03-15       Impact factor: 2.616

7.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

8.  X-ray damage to the Mn4Ca complex in single crystals of photosystem II: a case study for metalloprotein crystallography.

Authors:  Junko Yano; Jan Kern; Klaus-Dieter Irrgang; Matthew J Latimer; Uwe Bergmann; Pieter Glatzel; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Kenneth Sauer; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-15       Impact factor: 11.205

9.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Diffraction data analysis in the presence of radiation damage.

Authors:  Dominika Borek; Marcin Cymborowski; Mischa Machius; Wladek Minor; Zbyszek Otwinowski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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