Literature DB >> 21580385

N-(3-Chloro-propion-yl)-N'-phenyl-thio-urea.

Eliyanti A Othman1, Siti K C Soh, Bohari M Yamin.   

Abstract

The title compound, C(10)H(11)ClN(2)OS, adopts a cis-trans configuration with respect to the position of the phenyl and 3-chloro-propionyl groups relative to the thiono group across the C-N bonds. The benzene ring is perpendicular to the propionyl thio-urea fragment with a dihedral angle of 82.62 (10)°. An intra-molecular N-H⋯O inter-action occurs. The crystal structure is stabilized by inter-molecular N-H⋯S hydrogen bonds, which link pairs of mol-ecules, building up R(2) (2)(8) ring motifs, and C-H.. π inter-actions.

Entities:  

Year:  2010        PMID: 21580385      PMCID: PMC2983529          DOI: 10.1107/S1600536810005271

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ismail et al. (2007 ▶); Ismail & Yamin (2009 ▶). For hydrogen-bond motifs, see: Etter et al.(1990 ▶); Bernstein et al. (1995 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C10H11ClN2OS M = 242.72 Triclinic, a = 5.8088 (12) Å b = 10.467 (2) Å c = 10.660 (2) Å α = 112.811 (3)° β = 101.855 (3)° γ = 95.483 (3)° V = 573.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.49 mm−1 T = 298 K 0.49 × 0.45 × 0.27 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.795, T max = 0.879 5617 measured reflections 2103 independent reflections 1798 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.113 S = 1.04 2103 reflections 136 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005271/dn2535sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005271/dn2535Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11ClN2OSZ = 2
Mr = 242.72F(000) = 252
Triclinic, P1Dx = 1.405 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8088 (12) ÅCell parameters from 3405 reflections
b = 10.467 (2) Åθ = 2.1–25.5°
c = 10.660 (2) ŵ = 0.49 mm1
α = 112.811 (3)°T = 298 K
β = 101.855 (3)°Block, colourless
γ = 95.483 (3)°0.49 × 0.45 × 0.27 mm
V = 573.6 (2) Å3
Bruker SMART APEX CCD area-detector diffractometer2103 independent reflections
Radiation source: fine-focus sealed tube1798 reflections with I > 2σ(I)
Detector resolution: 83.66 pixels mm-1Rint = 0.016
ω scanθmax = 25.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→7
Tmin = 0.795, Tmax = 0.879k = −12→12
5617 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0559P)2 + 0.2663P] where P = (Fo2 + 2Fc2)/3
2103 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.23811 (13)1.37819 (8)0.50799 (7)0.0777 (3)
S11.10045 (13)0.86771 (7)0.31949 (6)0.0653 (2)
O10.5152 (3)1.07380 (16)0.16725 (14)0.0539 (4)
N10.7823 (3)1.03263 (18)0.32922 (17)0.0497 (4)
H1A0.84131.06140.41860.060*
N20.7847 (3)0.87565 (18)0.10659 (17)0.0484 (4)
H2A0.67810.91540.07530.058*
C10.3405 (4)1.2689 (3)0.3640 (2)0.0594 (6)
H1B0.20911.19350.29670.071*
H1C0.39311.32440.31670.071*
C20.5422 (4)1.2067 (2)0.4124 (2)0.0539 (5)
H2B0.49681.16230.47070.065*
H2C0.68091.28150.46960.065*
C30.6079 (4)1.0991 (2)0.2902 (2)0.0434 (5)
C40.8769 (4)0.9252 (2)0.2443 (2)0.0452 (5)
C50.8541 (4)0.7586 (2)0.00691 (19)0.0435 (5)
C61.0500 (4)0.7804 (2)−0.0412 (2)0.0543 (5)
H6A1.14040.8707−0.00870.065*
C71.1101 (5)0.6653 (3)−0.1391 (3)0.0618 (6)
H7A1.24210.6787−0.17250.074*
C80.9790 (5)0.5329 (3)−0.1872 (2)0.0635 (7)
H8A1.02210.4565−0.25240.076*
C90.7837 (5)0.5125 (2)−0.1393 (3)0.0646 (7)
H9A0.69340.4221−0.17240.078*
C100.7203 (4)0.6258 (2)−0.0418 (2)0.0541 (5)
H10A0.58720.6120−0.00940.065*
U11U22U33U12U13U23
Cl10.0802 (5)0.0871 (5)0.0664 (4)0.0432 (4)0.0358 (4)0.0181 (4)
S10.0877 (5)0.0664 (4)0.0387 (3)0.0470 (3)0.0082 (3)0.0157 (3)
O10.0636 (9)0.0576 (9)0.0367 (8)0.0276 (7)0.0084 (7)0.0145 (7)
N10.0632 (11)0.0471 (10)0.0316 (8)0.0248 (8)0.0058 (7)0.0090 (7)
N20.0596 (11)0.0462 (10)0.0345 (9)0.0255 (8)0.0069 (7)0.0110 (7)
C10.0641 (14)0.0675 (15)0.0476 (12)0.0343 (12)0.0188 (11)0.0180 (11)
C20.0604 (13)0.0556 (13)0.0400 (11)0.0260 (11)0.0097 (10)0.0126 (10)
C30.0480 (11)0.0397 (10)0.0384 (11)0.0137 (9)0.0082 (8)0.0125 (8)
C40.0560 (12)0.0387 (10)0.0384 (10)0.0162 (9)0.0102 (9)0.0130 (8)
C50.0524 (11)0.0440 (11)0.0313 (9)0.0205 (9)0.0066 (8)0.0126 (8)
C60.0513 (12)0.0552 (13)0.0508 (12)0.0123 (10)0.0090 (10)0.0182 (10)
C70.0600 (14)0.0798 (18)0.0559 (14)0.0321 (13)0.0245 (11)0.0301 (13)
C80.0891 (18)0.0620 (15)0.0459 (13)0.0419 (14)0.0251 (12)0.0194 (11)
C90.0920 (19)0.0416 (12)0.0555 (14)0.0182 (12)0.0218 (13)0.0130 (10)
C100.0650 (14)0.0484 (12)0.0517 (12)0.0169 (10)0.0219 (11)0.0192 (10)
Cl1—C11.778 (2)C2—H2B0.9700
S1—C41.669 (2)C2—H2C0.9700
O1—C31.221 (2)C5—C101.369 (3)
N1—C31.367 (3)C5—C61.375 (3)
N1—C41.386 (3)C6—C71.385 (3)
N1—H1A0.8600C6—H6A0.9300
N2—C41.320 (3)C7—C81.361 (4)
N2—C51.433 (2)C7—H7A0.9300
N2—H2A0.8600C8—C91.367 (4)
C1—C21.490 (3)C8—H8A0.9300
C1—H1B0.9700C9—C101.381 (3)
C1—H1C0.9700C9—H9A0.9300
C2—C31.503 (3)C10—H10A0.9300
C3—N1—C4128.77 (17)N2—C4—N1117.03 (18)
C3—N1—H1A115.6N2—C4—S1123.88 (16)
C4—N1—H1A115.6N1—C4—S1119.09 (15)
C4—N2—C5122.97 (17)C10—C5—C6120.60 (19)
C4—N2—H2A118.5C10—C5—N2119.22 (19)
C5—N2—H2A118.5C6—C5—N2120.17 (19)
C2—C1—Cl1111.32 (16)C5—C6—C7118.7 (2)
C2—C1—H1B109.4C5—C6—H6A120.7
Cl1—C1—H1B109.4C7—C6—H6A120.7
C2—C1—H1C109.4C8—C7—C6121.0 (2)
Cl1—C1—H1C109.4C8—C7—H7A119.5
H1B—C1—H1C108.0C6—C7—H7A119.5
C1—C2—C3111.71 (17)C7—C8—C9119.9 (2)
C1—C2—H2B109.3C7—C8—H8A120.1
C3—C2—H2B109.3C9—C8—H8A120.1
C1—C2—H2C109.3C8—C9—C10120.1 (2)
C3—C2—H2C109.3C8—C9—H9A119.9
H2B—C2—H2C107.9C10—C9—H9A119.9
O1—C3—N1122.97 (18)C5—C10—C9119.7 (2)
O1—C3—C2123.17 (18)C5—C10—H10A120.1
N1—C3—C2113.86 (17)C9—C10—H10A120.1
Cl1—C1—C2—C3172.29 (17)C4—N2—C5—C6−86.1 (3)
C4—N1—C3—O1−3.2 (4)C10—C5—C6—C7−0.5 (3)
C4—N1—C3—C2177.1 (2)N2—C5—C6—C7−179.04 (19)
C1—C2—C3—O14.3 (3)C5—C6—C7—C8−0.1 (3)
C1—C2—C3—N1−176.1 (2)C6—C7—C8—C90.4 (4)
C5—N2—C4—N1−175.79 (19)C7—C8—C9—C10−0.3 (4)
C5—N2—C4—S15.2 (3)C6—C5—C10—C90.6 (3)
C3—N1—C4—N2−2.1 (3)N2—C5—C10—C9179.2 (2)
C3—N1—C4—S1176.94 (18)C8—C9—C10—C5−0.2 (4)
C4—N2—C5—C1095.3 (3)
Cg1 is the centroid of the C5–C10 ring.
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.862.012.677 (3)134
N1—H1A···S1i0.862.533.3709 (19)165
C1—H1C···Cg1ii0.972.843.466123
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C5–C10 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.862.012.677 (3)134
N1—H1A⋯S1i0.862.533.3709 (19)165
C1—H1CCg1ii0.972.843.466123

Symmetry codes: (i) ; (ii) .

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