Literature DB >> 24526981

N-(2-Chloro-5-nitro-phen-yl)-N'-(3-chloro-propion-yl)thio-urea.

Bohari M Yamin1, Siti K C Soh1, Siti Fairus M Yusoff1.   

Abstract

The title compound, C10H9Cl2N3O3S, adopts a trans-cis conformation with respect to the position of chloropropionyl and chloronitrobenzene groups respectively, against the thiono about their C-N bonds. The conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, there is a short Cl⋯Cl contact with a distance of 3.386 (13) Å.

Entities:  

Year:  2013        PMID: 24526981      PMCID: PMC3914079          DOI: 10.1107/S1600536813032662

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Othman et al. (2010 ▶); Yamin et al. (2011 ▶); Yamin & Othman (2011 ▶); Yusof et al., (2011 ▶).

Experimental

Crystal data

C10H9Cl2N3O3S M = 322.16 Monoclinic, a = 21.764 (6) Å b = 5.2284 (13) Å c = 24.134 (6) Å β = 106.388 (8)° V = 2634.6 (12) Å3 Z = 8 Mo Kα radiation μ = 0.66 mm−1 T = 298 K 0.38 × 0.36 × 0.27 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker 2000 ▶) T min = 0.902, T max = 0.919 12266 measured reflections 2460 independent reflections 2116 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.097 S = 1.05 2460 reflections 172 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813032662/fj2651sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032662/fj2651Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813032662/fj2651Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H9Cl2N3O3SZ = 8
Mr = 322.16F(000) = 1312
Monoclinic, C2/cDx = 1.624 Mg m3
a = 21.764 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 5.2284 (13) ŵ = 0.66 mm1
c = 24.134 (6) ÅT = 298 K
β = 106.388 (8)°Block, colorless
V = 2634.6 (12) Å30.38 × 0.36 × 0.27 mm
Bruker SMART APEX CCD area-detector diffractometer2460 independent reflections
Radiation source: fine-focus sealed tube2116 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 1.8°
ω scansh = −26→26
Absorption correction: multi-scan (SADABS; Bruker 2000)k = −6→6
Tmin = 0.902, Tmax = 0.919l = −29→29
12266 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0496P)2 + 1.9444P] where P = (Fo2 + 2Fc2)/3
2460 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.01680 (3)0.29301 (14)−0.16862 (3)0.0761 (2)
Cl20.05486 (3)1.21922 (11)−0.00637 (3)0.05899 (18)
S10.23748 (3)0.45825 (11)0.07394 (2)0.05376 (18)
O10.09544 (9)0.7795 (4)−0.08527 (7)0.0804 (6)
O20.20313 (12)0.6949 (5)0.24336 (8)0.0984 (7)
O30.15801 (11)1.0096 (4)0.27253 (8)0.0953 (7)
N10.17678 (8)0.5279 (3)−0.03529 (7)0.0463 (4)
H10.20310.4119−0.03960.056*
N20.14400 (8)0.7943 (3)0.02607 (7)0.0493 (4)
H20.12130.8542−0.00640.059*
N30.17078 (11)0.8880 (5)0.23452 (9)0.0698 (6)
C10.07531 (12)0.4940 (5)−0.18585 (9)0.0621 (6)
H1A0.08170.4399−0.22230.075*
H1B0.05990.6690−0.19020.075*
C20.13788 (11)0.4820 (5)−0.13939 (9)0.0643 (6)
H2A0.17090.5636−0.15310.077*
H2B0.14990.3045−0.13100.077*
C30.13382 (11)0.6119 (5)−0.08498 (9)0.0549 (5)
C40.18352 (9)0.6053 (4)0.02127 (8)0.0423 (4)
C50.13280 (9)0.9128 (4)0.07449 (8)0.0446 (4)
C60.15981 (10)0.8404 (4)0.13142 (9)0.0522 (5)
H60.18850.70460.14040.063*
C70.14349 (11)0.9724 (4)0.17438 (9)0.0542 (5)
C80.10111 (12)1.1733 (5)0.16383 (11)0.0633 (6)
H80.09101.25810.19400.076*
C90.07415 (11)1.2451 (5)0.10774 (11)0.0623 (6)
H90.04521.38020.09940.075*
C100.08968 (9)1.1184 (4)0.06386 (9)0.0488 (5)
U11U22U33U12U13U23
Cl10.0769 (4)0.0880 (5)0.0603 (4)−0.0004 (3)0.0144 (3)0.0036 (3)
Cl20.0538 (3)0.0559 (3)0.0650 (4)0.0055 (2)0.0129 (3)0.0085 (3)
S10.0527 (3)0.0642 (4)0.0402 (3)0.0126 (2)0.0063 (2)0.0008 (2)
O10.0931 (13)0.0910 (13)0.0459 (9)0.0442 (11)0.0013 (8)−0.0009 (9)
O20.1354 (19)0.1033 (17)0.0538 (11)0.0309 (15)0.0222 (11)0.0075 (11)
O30.1274 (18)0.1121 (16)0.0543 (11)0.0061 (13)0.0387 (11)−0.0152 (11)
N10.0480 (9)0.0518 (10)0.0379 (8)0.0064 (7)0.0101 (7)−0.0004 (7)
N20.0559 (10)0.0499 (10)0.0389 (9)0.0100 (8)0.0082 (7)0.0002 (7)
N30.0830 (14)0.0789 (14)0.0504 (11)−0.0075 (12)0.0233 (10)−0.0064 (11)
C10.0694 (14)0.0764 (16)0.0370 (10)0.0101 (12)0.0092 (10)0.0061 (10)
C20.0597 (13)0.0895 (18)0.0401 (11)0.0143 (12)0.0080 (10)−0.0035 (11)
C30.0560 (12)0.0647 (13)0.0405 (11)0.0111 (11)0.0077 (9)0.0017 (10)
C40.0429 (10)0.0446 (10)0.0386 (10)−0.0046 (8)0.0104 (8)−0.0011 (8)
C50.0450 (10)0.0430 (11)0.0462 (11)−0.0058 (8)0.0133 (8)−0.0055 (9)
C60.0551 (12)0.0519 (12)0.0499 (12)−0.0007 (10)0.0156 (9)−0.0052 (9)
C70.0585 (12)0.0588 (13)0.0471 (11)−0.0104 (10)0.0177 (10)−0.0072 (10)
C80.0682 (15)0.0651 (15)0.0640 (15)−0.0021 (12)0.0306 (12)−0.0160 (12)
C90.0588 (13)0.0592 (14)0.0733 (16)0.0069 (11)0.0257 (12)−0.0086 (12)
C100.0430 (10)0.0474 (11)0.0555 (12)−0.0050 (9)0.0128 (9)−0.0013 (9)
Cl1—C11.788 (3)C1—H1A0.9700
Cl2—C101.732 (2)C1—H1B0.9700
S1—C41.656 (2)C2—C31.503 (3)
O1—C31.209 (3)C2—H2A0.9700
O2—N31.215 (3)C2—H2B0.9700
O3—N31.211 (3)C5—C61.386 (3)
N1—C31.368 (3)C5—C101.402 (3)
N1—C41.391 (2)C6—C71.373 (3)
N1—H10.8600C6—H60.9300
N2—C41.336 (3)C7—C81.373 (3)
N2—C51.403 (2)C8—C91.367 (3)
N2—H20.8600C8—H80.9300
N3—C71.472 (3)C9—C101.370 (3)
C1—C21.501 (3)C9—H90.9300
C3—N1—C4128.54 (18)N1—C3—C2115.24 (19)
C3—N1—H1115.7N2—C4—N1114.09 (17)
C4—N1—H1115.7N2—C4—S1127.65 (15)
C4—N2—C5131.77 (17)N1—C4—S1118.27 (15)
C4—N2—H2114.1C6—C5—C10117.74 (19)
C5—N2—H2114.1C6—C5—N2125.45 (19)
O3—N3—O2123.3 (2)C10—C5—N2116.79 (18)
O3—N3—C7118.3 (2)C7—C6—C5118.9 (2)
O2—N3—C7118.3 (2)C7—C6—H6120.5
C2—C1—Cl1110.94 (17)C5—C6—H6120.5
C2—C1—H1A109.5C6—C7—C8123.2 (2)
Cl1—C1—H1A109.5C6—C7—N3118.4 (2)
C2—C1—H1B109.5C8—C7—N3118.4 (2)
Cl1—C1—H1B109.5C9—C8—C7118.1 (2)
H1A—C1—H1B108.0C9—C8—H8120.9
C1—C2—C3111.67 (19)C7—C8—H8120.9
C1—C2—H2A109.3C8—C9—C10120.1 (2)
C3—C2—H2A109.3C8—C9—H9119.9
C1—C2—H2B109.3C10—C9—H9119.9
C3—C2—H2B109.3C9—C10—C5121.8 (2)
H2A—C2—H2B107.9C9—C10—Cl2118.31 (18)
O1—C3—N1122.5 (2)C5—C10—Cl2119.85 (16)
O1—C3—C2122.22 (19)
Cl1—C1—C2—C3−70.4 (3)C5—C6—C7—N3177.91 (19)
C4—N1—C3—O12.2 (4)O3—N3—C7—C6177.6 (2)
C4—N1—C3—C2−178.1 (2)O2—N3—C7—C6−4.9 (3)
C1—C2—C3—O1−25.3 (4)O3—N3—C7—C8−4.8 (3)
C1—C2—C3—N1155.0 (2)O2—N3—C7—C8172.7 (2)
C5—N2—C4—N1175.19 (19)C6—C7—C8—C9−0.2 (4)
C5—N2—C4—S1−4.5 (3)N3—C7—C8—C9−177.7 (2)
C3—N1—C4—N2−3.1 (3)C7—C8—C9—C10−0.2 (4)
C3—N1—C4—S1176.60 (18)C8—C9—C10—C50.4 (3)
C4—N2—C5—C6−4.7 (3)C8—C9—C10—Cl2−179.30 (18)
C4—N2—C5—C10176.6 (2)C6—C5—C10—C9−0.2 (3)
C10—C5—C6—C7−0.2 (3)N2—C5—C10—C9178.68 (19)
N2—C5—C6—C7−178.95 (19)C6—C5—C10—Cl2179.49 (15)
C5—C6—C7—C80.4 (3)N2—C5—C10—Cl2−1.7 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.861.872.596 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O10.861.872.596 (2)142
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-butano-yl)-N'-phenyl-thio-urea.

Authors:  Bohari M Yamin; Nur Eliyanti Ali Othman; M Sukeri M Yusof; Farhana Embong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

3.  N-(3-Chloro-propion-yl)-N'-phenyl-thio-urea.

Authors:  Eliyanti A Othman; Siti K C Soh; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

4.  N-(4-Bromo-butano-yl)-N'-phen-ylthio-urea.

Authors:  Bohari M Yamin; Nur Eliyanti Ali Othman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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