Literature DB >> 22091165

3-[(1-Isobutyl-1H-imidazo[4,5-c]quinolin-4-yl)amino]-benzoic acid.

Hoong-Kun Fun, Tara Shahani, Reshma Kayarmar, G K Nagaraja.   

Abstract

In the title compound, C(21)H(20)N(4)O(2), the statistically planar 1H-limidazole ring [maximum deviation = 0.003 (1) Å] makes dihedral angles of 1.33 (9) and 8.23 (7)°, respectively, with the essentially planar fused pyridine ring [maximum devation = 0.018 (1) Å] and the pendant benzene ring, which is attached to the pyridine ring by an -NH- group. An intra-molecular C-H⋯N inter-action, which generates an S(6) ring, helps to estalish the mol-ecular conformation. In the crystal, the mol-ecules are linked by N-H⋯O, C-H⋯O and O-H-N hydrogen bonds, which generate bifurcated R(1) (2)(6) and R(2) (2)(9) ring motifs, resulting in supra-molecular [001] chains. The crystal structure also features weak π-π stacking [centroid-centroid distance = 3.5943 (9) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 22091165      PMCID: PMC3213588          DOI: 10.1107/S1600536811028765

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our previous study of a related structure and background references, see: Loh et al. (2011 ▶). For a further related structure, see: Rasmussen et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For reference bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H20N4O2 M = 360.41 Monoclinic, a = 9.6440 (1) Å b = 15.1496 (2) Å c = 14.5286 (2) Å β = 123.927 (1)° V = 1761.28 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.41 × 0.26 × 0.22 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.964, T max = 0.980 23777 measured reflections 5859 independent reflections 4504 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.04 5859 reflections 254 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009) ▶. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028765/hb5954sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028765/hb5954Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028765/hb5954Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20N4O2F(000) = 760
Mr = 360.41Dx = 1.359 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5489 reflections
a = 9.6440 (1) Åθ = 2.2–32.1°
b = 15.1496 (2) ŵ = 0.09 mm1
c = 14.5286 (2) ÅT = 296 K
β = 123.927 (1)°Block, colourless
V = 1761.28 (4) Å30.41 × 0.26 × 0.22 mm
Z = 4
Bruker APEXII DUO CCD diffractometer5859 independent reflections
Radiation source: fine-focus sealed tube4504 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 31.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→14
Tmin = 0.964, Tmax = 0.980k = −20→22
23777 measured reflectionsl = −21→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0764P)2 + 0.3392P] where P = (Fo2 + 2Fc2)/3
5859 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.14729 (12)−0.33971 (6)0.12947 (8)0.0215 (2)
O20.15417 (11)−0.47845 (6)0.18402 (7)0.01792 (19)
N10.16268 (13)−0.15414 (6)0.43284 (9)0.0156 (2)
N20.24570 (13)−0.09564 (6)0.32204 (8)0.0155 (2)
N30.33813 (12)0.13649 (6)0.49615 (8)0.0148 (2)
N40.22805 (13)0.02550 (7)0.53736 (8)0.0153 (2)
C10.07884 (15)−0.42262 (8)0.33507 (10)0.0170 (2)
H1A0.0624−0.48210.31600.020*
C20.05934 (17)−0.39045 (8)0.41686 (11)0.0206 (3)
H2A0.0269−0.42870.45160.025*
C30.08756 (16)−0.30209 (8)0.44747 (10)0.0188 (2)
H3A0.0752−0.28220.50300.023*
C40.13454 (14)−0.24239 (7)0.39563 (10)0.0142 (2)
C50.15066 (14)−0.27426 (8)0.31152 (9)0.0142 (2)
H5A0.1794−0.23580.27480.017*
C60.12366 (14)−0.36354 (7)0.28254 (9)0.0136 (2)
C70.14233 (14)−0.39209 (8)0.19153 (9)0.0144 (2)
C80.21835 (14)−0.08493 (7)0.40042 (9)0.0141 (2)
C90.30995 (14)−0.02752 (8)0.29402 (10)0.0149 (2)
C100.33503 (16)−0.04493 (8)0.20876 (10)0.0190 (2)
H10A0.3056−0.09970.17400.023*
C110.40222 (16)0.01784 (8)0.17665 (11)0.0207 (3)
H11A0.41700.00560.11990.025*
C120.44865 (16)0.10040 (8)0.22899 (11)0.0198 (2)
H12A0.49630.14220.20780.024*
C130.42430 (15)0.12010 (8)0.31138 (10)0.0173 (2)
H13A0.45470.17530.34510.021*
C140.35331 (14)0.05705 (8)0.34531 (9)0.0143 (2)
C150.31713 (14)0.06692 (7)0.42760 (9)0.0135 (2)
C160.24962 (14)−0.00111 (8)0.45501 (9)0.0139 (2)
C170.28305 (15)0.10753 (8)0.55894 (10)0.0163 (2)
H17A0.28410.14230.61210.020*
C180.41403 (15)0.22270 (8)0.50622 (10)0.0168 (2)
H18A0.51320.21420.50560.020*
H18B0.44900.24840.57720.020*
C190.29783 (15)0.28790 (8)0.41406 (10)0.0175 (2)
H19A0.24610.25760.34250.021*
C200.40172 (18)0.36485 (9)0.41590 (13)0.0277 (3)
H20A0.48290.34310.40290.041*
H20B0.45790.39340.48690.041*
H20C0.32970.40640.35900.041*
C210.15965 (15)0.31946 (8)0.42709 (11)0.0211 (3)
H21A0.08500.35750.36630.032*
H21B0.20800.35130.49560.032*
H21C0.09890.26950.42760.032*
H1N10.1529 (19)−0.1435 (11)0.4871 (14)0.021 (4)*
H1O20.171 (3)−0.4938 (15)0.1246 (18)0.052 (6)*
U11U22U33U12U13U23
O10.0341 (5)0.0166 (4)0.0218 (5)0.0039 (4)0.0207 (4)0.0028 (3)
O20.0250 (4)0.0134 (4)0.0200 (4)0.0004 (3)0.0155 (4)−0.0017 (3)
N10.0232 (5)0.0119 (4)0.0170 (5)−0.0023 (4)0.0145 (4)−0.0020 (3)
N20.0192 (5)0.0131 (5)0.0163 (5)0.0004 (4)0.0112 (4)0.0007 (3)
N30.0184 (5)0.0110 (4)0.0150 (5)−0.0013 (3)0.0094 (4)−0.0002 (3)
N40.0184 (5)0.0141 (5)0.0147 (4)−0.0001 (3)0.0100 (4)0.0003 (3)
C10.0215 (5)0.0135 (5)0.0182 (5)−0.0030 (4)0.0125 (5)−0.0018 (4)
C20.0298 (6)0.0166 (6)0.0220 (6)−0.0062 (5)0.0186 (5)−0.0018 (4)
C30.0265 (6)0.0170 (6)0.0200 (6)−0.0043 (4)0.0174 (5)−0.0031 (4)
C40.0149 (5)0.0123 (5)0.0148 (5)−0.0012 (4)0.0079 (4)−0.0009 (4)
C50.0162 (5)0.0125 (5)0.0151 (5)−0.0001 (4)0.0094 (4)0.0002 (4)
C60.0145 (5)0.0135 (5)0.0130 (5)0.0005 (4)0.0077 (4)−0.0002 (4)
C70.0136 (5)0.0143 (5)0.0146 (5)0.0008 (4)0.0074 (4)−0.0017 (4)
C80.0153 (5)0.0119 (5)0.0144 (5)−0.0002 (4)0.0078 (4)0.0006 (4)
C90.0160 (5)0.0141 (5)0.0149 (5)0.0015 (4)0.0087 (4)0.0020 (4)
C100.0236 (6)0.0170 (6)0.0196 (6)0.0031 (4)0.0141 (5)0.0015 (4)
C110.0257 (6)0.0214 (6)0.0198 (6)0.0050 (5)0.0158 (5)0.0049 (5)
C120.0207 (6)0.0195 (6)0.0226 (6)0.0030 (4)0.0143 (5)0.0073 (5)
C130.0177 (5)0.0153 (5)0.0192 (6)0.0008 (4)0.0106 (5)0.0033 (4)
C140.0140 (5)0.0142 (5)0.0142 (5)0.0014 (4)0.0077 (4)0.0023 (4)
C150.0145 (5)0.0112 (5)0.0140 (5)0.0004 (4)0.0075 (4)0.0003 (4)
C160.0155 (5)0.0131 (5)0.0134 (5)0.0008 (4)0.0082 (4)0.0006 (4)
C170.0209 (5)0.0138 (5)0.0155 (5)−0.0009 (4)0.0111 (5)−0.0005 (4)
C180.0182 (5)0.0119 (5)0.0189 (6)−0.0029 (4)0.0094 (5)−0.0003 (4)
C190.0194 (5)0.0134 (5)0.0197 (6)0.0002 (4)0.0109 (5)0.0022 (4)
C200.0284 (7)0.0178 (6)0.0411 (8)0.0009 (5)0.0220 (6)0.0083 (5)
C210.0194 (6)0.0175 (6)0.0245 (6)−0.0001 (4)0.0111 (5)−0.0006 (5)
O1—C71.2219 (15)C9—C101.4131 (17)
O2—C71.3231 (14)C9—C141.4225 (16)
O2—H1O20.99 (2)C10—C111.3709 (18)
N1—C81.3755 (15)C10—H10A0.9300
N1—C41.4106 (15)C11—C121.4012 (18)
N1—H1N10.860 (16)C11—H11A0.9300
N2—C81.3145 (15)C12—C131.3750 (18)
N2—C91.3771 (15)C12—H12A0.9300
N3—C171.3592 (15)C13—C141.4146 (16)
N3—C151.3852 (14)C13—H13A0.9300
N3—C181.4641 (15)C14—C151.4280 (17)
N4—C171.3185 (15)C15—C161.3907 (16)
N4—C161.3838 (15)C17—H17A0.9300
C1—C21.3908 (17)C18—C191.5327 (16)
C1—C61.3923 (16)C18—H18A0.9700
C1—H1A0.9300C18—H18B0.9700
C2—C31.3887 (17)C19—C211.5238 (18)
C2—H2A0.9300C19—C201.5276 (18)
C3—C41.4041 (16)C19—H19A0.9800
C3—H3A0.9300C20—H20A0.9600
C4—C51.4008 (16)C20—H20B0.9600
C5—C61.3973 (16)C20—H20C0.9600
C5—H5A0.9300C21—H21A0.9600
C6—C71.4945 (16)C21—H21B0.9600
C8—C161.4371 (16)C21—H21C0.9600
C7—O2—H1O2111.6 (13)C13—C12—C11120.54 (11)
C8—N1—C4128.29 (10)C13—C12—H12A119.7
C8—N1—H1N1115.8 (11)C11—C12—H12A119.7
C4—N1—H1N1115.7 (11)C12—C13—C14120.52 (11)
C8—N2—C9120.30 (10)C12—C13—H13A119.7
C17—N3—C15106.38 (10)C14—C13—H13A119.7
C17—N3—C18125.57 (10)C13—C14—C9118.92 (11)
C15—N3—C18127.95 (10)C13—C14—C15127.81 (11)
C17—N4—C16104.21 (10)C9—C14—C15113.27 (10)
C2—C1—C6118.33 (11)N3—C15—C16105.18 (10)
C2—C1—H1A120.8N3—C15—C14132.51 (11)
C6—C1—H1A120.8C16—C15—C14122.30 (10)
C3—C2—C1121.03 (11)N4—C16—C15110.61 (10)
C3—C2—H2A119.5N4—C16—C8130.39 (11)
C1—C2—H2A119.5C15—C16—C8118.97 (11)
C2—C3—C4120.89 (11)N4—C17—N3113.62 (11)
C2—C3—H3A119.6N4—C17—H17A123.2
C4—C3—H3A119.6N3—C17—H17A123.2
C5—C4—C3118.17 (11)N3—C18—C19113.99 (10)
C5—C4—N1124.73 (10)N3—C18—H18A108.8
C3—C4—N1117.10 (11)C19—C18—H18A108.8
C6—C5—C4120.25 (11)N3—C18—H18B108.8
C6—C5—H5A119.9C19—C18—H18B108.8
C4—C5—H5A119.9H18A—C18—H18B107.6
C1—C6—C5121.31 (11)C21—C19—C20111.64 (11)
C1—C6—C7121.77 (10)C21—C19—C18110.94 (10)
C5—C6—C7116.91 (10)C20—C19—C18108.90 (10)
O1—C7—O2122.72 (11)C21—C19—H19A108.4
O1—C7—C6122.59 (10)C20—C19—H19A108.4
O2—C7—C6114.69 (10)C18—C19—H19A108.4
N2—C8—N1120.53 (10)C19—C20—H20A109.5
N2—C8—C16120.36 (10)C19—C20—H20B109.5
N1—C8—C16119.10 (10)H20A—C20—H20B109.5
N2—C9—C10116.40 (11)C19—C20—H20C109.5
N2—C9—C14124.70 (11)H20A—C20—H20C109.5
C10—C9—C14118.89 (11)H20B—C20—H20C109.5
C11—C10—C9120.90 (12)C19—C21—H21A109.5
C11—C10—H10A119.6C19—C21—H21B109.5
C9—C10—H10A119.6H21A—C21—H21B109.5
C10—C11—C12120.20 (12)C19—C21—H21C109.5
C10—C11—H11A119.9H21A—C21—H21C109.5
C12—C11—H11A119.9H21B—C21—H21C109.5
C6—C1—C2—C3−1.50 (19)N2—C9—C14—C13177.58 (11)
C1—C2—C3—C40.8 (2)C10—C9—C14—C13−1.70 (16)
C2—C3—C4—C50.58 (18)N2—C9—C14—C15−2.51 (16)
C2—C3—C4—N1−179.23 (12)C10—C9—C14—C15178.21 (10)
C8—N1—C4—C5−3.85 (19)C17—N3—C15—C16−0.25 (12)
C8—N1—C4—C3175.94 (11)C18—N3—C15—C16176.10 (11)
C3—C4—C5—C6−1.29 (17)C17—N3—C15—C14−179.22 (12)
N1—C4—C5—C6178.50 (11)C18—N3—C15—C14−2.9 (2)
C2—C1—C6—C50.77 (18)C13—C14—C15—N30.0 (2)
C2—C1—C6—C7−178.19 (11)C9—C14—C15—N3−179.85 (11)
C4—C5—C6—C10.63 (17)C13—C14—C15—C16−178.78 (11)
C4—C5—C6—C7179.64 (10)C9—C14—C15—C161.32 (16)
C1—C6—C7—O1164.52 (12)C17—N4—C16—C15−0.49 (13)
C5—C6—C7—O1−14.48 (16)C17—N4—C16—C8177.45 (12)
C1—C6—C7—O2−15.91 (16)N3—C15—C16—N40.46 (13)
C5—C6—C7—O2165.09 (10)C14—C15—C16—N4179.56 (10)
C9—N2—C8—N1−176.50 (10)N3—C15—C16—C8−177.74 (10)
C9—N2—C8—C162.20 (16)C14—C15—C16—C81.36 (17)
C4—N1—C8—N23.04 (18)N2—C8—C16—N4178.96 (11)
C4—N1—C8—C16−175.68 (11)N1—C8—C16—N4−2.32 (18)
C8—N2—C9—C10−179.91 (10)N2—C8—C16—C15−3.25 (16)
C8—N2—C9—C140.79 (17)N1—C8—C16—C15175.47 (10)
N2—C9—C10—C11−178.40 (11)C16—N4—C17—N30.33 (13)
C14—C9—C10—C110.94 (18)C15—N3—C17—N4−0.05 (13)
C9—C10—C11—C120.58 (19)C18—N3—C17—N4−176.51 (10)
C10—C11—C12—C13−1.35 (19)C17—N3—C18—C19−104.71 (13)
C11—C12—C13—C140.55 (18)C15—N3—C18—C1979.60 (15)
C12—C13—C14—C90.97 (17)N3—C18—C19—C2171.13 (13)
C12—C13—C14—C15−178.92 (11)N3—C18—C19—C20−165.62 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.860 (16)2.114 (17)2.9436 (14)161.8 (15)
O2—H1O2···N4ii0.99 (2)1.71 (2)2.6926 (13)172 (2)
C3—H3A···O1i0.932.423.1998 (15)142
C5—H5A···N20.932.212.8337 (16)123
C1—H1A···Cg2iii0.932.943.3877 (14)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1i0.860 (16)2.114 (17)2.9436 (14)161.8 (15)
O2—H1O2⋯N4ii0.99 (2)1.71 (2)2.6926 (13)172 (2)
C3—H3A⋯O1i0.932.423.1998 (15)142
C5—H5A⋯N20.932.212.8337 (16)123
C1—H1ACg2iii0.932.943.3877 (14)111

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Fluoro-N-methyl-N-(1,2,3,4-tetra-hydro-carbazol-3-yl)benzene-sulfonamide.

Authors:  Kaspar Gothardt Rasmussen; Trond Ulven; Andrew D Bond
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

3.  4-Chloro-benzaldehyde (1-isobutyl-1H-imidazo[4,5-c]quinolin-4-yl)hydrazone monohydrate.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; Reshma Kayarmar; S Viveka; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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