| Literature DB >> 22091165 |
Hoong-Kun Fun, Tara Shahani, Reshma Kayarmar, G K Nagaraja.
Abstract
In the title compound, C(21)H(20)N(4)O(2), the statistically planar 1H-limidazole ring [maximum deviation = 0.003 (1) Å] makes dihedral angles of 1.33 (9) and 8.23 (7)°, respectively, with the essentially planar fused pyridine ring [maximum devation = 0.018 (1) Å] and the pendant benzene ring, which is attached to the pyridine ring by an -NH- group. An intra-molecular C-H⋯N inter-action, which generates an S(6) ring, helps to estalish the mol-ecular conformation. In the crystal, the mol-ecules are linked by N-H⋯O, C-H⋯O and O-H-N hydrogen bonds, which generate bifurcated R(1) (2)(6) and R(2) (2)(9) ring motifs, resulting in supra-molecular [001] chains. The crystal structure also features weak π-π stacking [centroid-centroid distance = 3.5943 (9) Å] and C-H⋯π inter-actions.Entities:
Year: 2011 PMID: 22091165 PMCID: PMC3213588 DOI: 10.1107/S1600536811028765
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H20N4O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5489 reflections |
| θ = 2.2–32.1° | |
| µ = 0.09 mm−1 | |
| β = 123.927 (1)° | Block, colourless |
| 0.41 × 0.26 × 0.22 mm | |
| Bruker APEXII DUO CCD diffractometer | 5859 independent reflections |
| Radiation source: fine-focus sealed tube | 4504 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 23777 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5859 reflections | (Δ/σ)max < 0.001 |
| 254 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.14729 (12) | −0.33971 (6) | 0.12947 (8) | 0.0215 (2) | |
| O2 | 0.15417 (11) | −0.47845 (6) | 0.18402 (7) | 0.01792 (19) | |
| N1 | 0.16268 (13) | −0.15414 (6) | 0.43284 (9) | 0.0156 (2) | |
| N2 | 0.24570 (13) | −0.09564 (6) | 0.32204 (8) | 0.0155 (2) | |
| N3 | 0.33813 (12) | 0.13649 (6) | 0.49615 (8) | 0.0148 (2) | |
| N4 | 0.22805 (13) | 0.02550 (7) | 0.53736 (8) | 0.0153 (2) | |
| C1 | 0.07884 (15) | −0.42262 (8) | 0.33507 (10) | 0.0170 (2) | |
| H1A | 0.0624 | −0.4821 | 0.3160 | 0.020* | |
| C2 | 0.05934 (17) | −0.39045 (8) | 0.41686 (11) | 0.0206 (3) | |
| H2A | 0.0269 | −0.4287 | 0.4516 | 0.025* | |
| C3 | 0.08756 (16) | −0.30209 (8) | 0.44747 (10) | 0.0188 (2) | |
| H3A | 0.0752 | −0.2822 | 0.5030 | 0.023* | |
| C4 | 0.13454 (14) | −0.24239 (7) | 0.39563 (10) | 0.0142 (2) | |
| C5 | 0.15066 (14) | −0.27426 (8) | 0.31152 (9) | 0.0142 (2) | |
| H5A | 0.1794 | −0.2358 | 0.2748 | 0.017* | |
| C6 | 0.12366 (14) | −0.36354 (7) | 0.28254 (9) | 0.0136 (2) | |
| C7 | 0.14233 (14) | −0.39209 (8) | 0.19153 (9) | 0.0144 (2) | |
| C8 | 0.21835 (14) | −0.08493 (7) | 0.40042 (9) | 0.0141 (2) | |
| C9 | 0.30995 (14) | −0.02752 (8) | 0.29402 (10) | 0.0149 (2) | |
| C10 | 0.33503 (16) | −0.04493 (8) | 0.20876 (10) | 0.0190 (2) | |
| H10A | 0.3056 | −0.0997 | 0.1740 | 0.023* | |
| C11 | 0.40222 (16) | 0.01784 (8) | 0.17665 (11) | 0.0207 (3) | |
| H11A | 0.4170 | 0.0056 | 0.1199 | 0.025* | |
| C12 | 0.44865 (16) | 0.10040 (8) | 0.22899 (11) | 0.0198 (2) | |
| H12A | 0.4963 | 0.1422 | 0.2078 | 0.024* | |
| C13 | 0.42430 (15) | 0.12010 (8) | 0.31138 (10) | 0.0173 (2) | |
| H13A | 0.4547 | 0.1753 | 0.3451 | 0.021* | |
| C14 | 0.35331 (14) | 0.05705 (8) | 0.34531 (9) | 0.0143 (2) | |
| C15 | 0.31713 (14) | 0.06692 (7) | 0.42760 (9) | 0.0135 (2) | |
| C16 | 0.24962 (14) | −0.00111 (8) | 0.45501 (9) | 0.0139 (2) | |
| C17 | 0.28305 (15) | 0.10753 (8) | 0.55894 (10) | 0.0163 (2) | |
| H17A | 0.2841 | 0.1423 | 0.6121 | 0.020* | |
| C18 | 0.41403 (15) | 0.22270 (8) | 0.50622 (10) | 0.0168 (2) | |
| H18A | 0.5132 | 0.2142 | 0.5056 | 0.020* | |
| H18B | 0.4490 | 0.2484 | 0.5772 | 0.020* | |
| C19 | 0.29783 (15) | 0.28790 (8) | 0.41406 (10) | 0.0175 (2) | |
| H19A | 0.2461 | 0.2576 | 0.3425 | 0.021* | |
| C20 | 0.40172 (18) | 0.36485 (9) | 0.41590 (13) | 0.0277 (3) | |
| H20A | 0.4829 | 0.3431 | 0.4029 | 0.041* | |
| H20B | 0.4579 | 0.3934 | 0.4869 | 0.041* | |
| H20C | 0.3297 | 0.4064 | 0.3590 | 0.041* | |
| C21 | 0.15965 (15) | 0.31946 (8) | 0.42709 (11) | 0.0211 (3) | |
| H21A | 0.0850 | 0.3575 | 0.3663 | 0.032* | |
| H21B | 0.2080 | 0.3513 | 0.4956 | 0.032* | |
| H21C | 0.0989 | 0.2695 | 0.4276 | 0.032* | |
| H1N1 | 0.1529 (19) | −0.1435 (11) | 0.4871 (14) | 0.021 (4)* | |
| H1O2 | 0.171 (3) | −0.4938 (15) | 0.1246 (18) | 0.052 (6)* |
| O1 | 0.0341 (5) | 0.0166 (4) | 0.0218 (5) | 0.0039 (4) | 0.0207 (4) | 0.0028 (3) |
| O2 | 0.0250 (4) | 0.0134 (4) | 0.0200 (4) | 0.0004 (3) | 0.0155 (4) | −0.0017 (3) |
| N1 | 0.0232 (5) | 0.0119 (4) | 0.0170 (5) | −0.0023 (4) | 0.0145 (4) | −0.0020 (3) |
| N2 | 0.0192 (5) | 0.0131 (5) | 0.0163 (5) | 0.0004 (4) | 0.0112 (4) | 0.0007 (3) |
| N3 | 0.0184 (5) | 0.0110 (4) | 0.0150 (5) | −0.0013 (3) | 0.0094 (4) | −0.0002 (3) |
| N4 | 0.0184 (5) | 0.0141 (5) | 0.0147 (4) | −0.0001 (3) | 0.0100 (4) | 0.0003 (3) |
| C1 | 0.0215 (5) | 0.0135 (5) | 0.0182 (5) | −0.0030 (4) | 0.0125 (5) | −0.0018 (4) |
| C2 | 0.0298 (6) | 0.0166 (6) | 0.0220 (6) | −0.0062 (5) | 0.0186 (5) | −0.0018 (4) |
| C3 | 0.0265 (6) | 0.0170 (6) | 0.0200 (6) | −0.0043 (4) | 0.0174 (5) | −0.0031 (4) |
| C4 | 0.0149 (5) | 0.0123 (5) | 0.0148 (5) | −0.0012 (4) | 0.0079 (4) | −0.0009 (4) |
| C5 | 0.0162 (5) | 0.0125 (5) | 0.0151 (5) | −0.0001 (4) | 0.0094 (4) | 0.0002 (4) |
| C6 | 0.0145 (5) | 0.0135 (5) | 0.0130 (5) | 0.0005 (4) | 0.0077 (4) | −0.0002 (4) |
| C7 | 0.0136 (5) | 0.0143 (5) | 0.0146 (5) | 0.0008 (4) | 0.0074 (4) | −0.0017 (4) |
| C8 | 0.0153 (5) | 0.0119 (5) | 0.0144 (5) | −0.0002 (4) | 0.0078 (4) | 0.0006 (4) |
| C9 | 0.0160 (5) | 0.0141 (5) | 0.0149 (5) | 0.0015 (4) | 0.0087 (4) | 0.0020 (4) |
| C10 | 0.0236 (6) | 0.0170 (6) | 0.0196 (6) | 0.0031 (4) | 0.0141 (5) | 0.0015 (4) |
| C11 | 0.0257 (6) | 0.0214 (6) | 0.0198 (6) | 0.0050 (5) | 0.0158 (5) | 0.0049 (5) |
| C12 | 0.0207 (6) | 0.0195 (6) | 0.0226 (6) | 0.0030 (4) | 0.0143 (5) | 0.0073 (5) |
| C13 | 0.0177 (5) | 0.0153 (5) | 0.0192 (6) | 0.0008 (4) | 0.0106 (5) | 0.0033 (4) |
| C14 | 0.0140 (5) | 0.0142 (5) | 0.0142 (5) | 0.0014 (4) | 0.0077 (4) | 0.0023 (4) |
| C15 | 0.0145 (5) | 0.0112 (5) | 0.0140 (5) | 0.0004 (4) | 0.0075 (4) | 0.0003 (4) |
| C16 | 0.0155 (5) | 0.0131 (5) | 0.0134 (5) | 0.0008 (4) | 0.0082 (4) | 0.0006 (4) |
| C17 | 0.0209 (5) | 0.0138 (5) | 0.0155 (5) | −0.0009 (4) | 0.0111 (5) | −0.0005 (4) |
| C18 | 0.0182 (5) | 0.0119 (5) | 0.0189 (6) | −0.0029 (4) | 0.0094 (5) | −0.0003 (4) |
| C19 | 0.0194 (5) | 0.0134 (5) | 0.0197 (6) | 0.0002 (4) | 0.0109 (5) | 0.0022 (4) |
| C20 | 0.0284 (7) | 0.0178 (6) | 0.0411 (8) | 0.0009 (5) | 0.0220 (6) | 0.0083 (5) |
| C21 | 0.0194 (6) | 0.0175 (6) | 0.0245 (6) | −0.0001 (4) | 0.0111 (5) | −0.0006 (5) |
| O1—C7 | 1.2219 (15) | C9—C10 | 1.4131 (17) |
| O2—C7 | 1.3231 (14) | C9—C14 | 1.4225 (16) |
| O2—H1O2 | 0.99 (2) | C10—C11 | 1.3709 (18) |
| N1—C8 | 1.3755 (15) | C10—H10A | 0.9300 |
| N1—C4 | 1.4106 (15) | C11—C12 | 1.4012 (18) |
| N1—H1N1 | 0.860 (16) | C11—H11A | 0.9300 |
| N2—C8 | 1.3145 (15) | C12—C13 | 1.3750 (18) |
| N2—C9 | 1.3771 (15) | C12—H12A | 0.9300 |
| N3—C17 | 1.3592 (15) | C13—C14 | 1.4146 (16) |
| N3—C15 | 1.3852 (14) | C13—H13A | 0.9300 |
| N3—C18 | 1.4641 (15) | C14—C15 | 1.4280 (17) |
| N4—C17 | 1.3185 (15) | C15—C16 | 1.3907 (16) |
| N4—C16 | 1.3838 (15) | C17—H17A | 0.9300 |
| C1—C2 | 1.3908 (17) | C18—C19 | 1.5327 (16) |
| C1—C6 | 1.3923 (16) | C18—H18A | 0.9700 |
| C1—H1A | 0.9300 | C18—H18B | 0.9700 |
| C2—C3 | 1.3887 (17) | C19—C21 | 1.5238 (18) |
| C2—H2A | 0.9300 | C19—C20 | 1.5276 (18) |
| C3—C4 | 1.4041 (16) | C19—H19A | 0.9800 |
| C3—H3A | 0.9300 | C20—H20A | 0.9600 |
| C4—C5 | 1.4008 (16) | C20—H20B | 0.9600 |
| C5—C6 | 1.3973 (16) | C20—H20C | 0.9600 |
| C5—H5A | 0.9300 | C21—H21A | 0.9600 |
| C6—C7 | 1.4945 (16) | C21—H21B | 0.9600 |
| C8—C16 | 1.4371 (16) | C21—H21C | 0.9600 |
| C7—O2—H1O2 | 111.6 (13) | C13—C12—C11 | 120.54 (11) |
| C8—N1—C4 | 128.29 (10) | C13—C12—H12A | 119.7 |
| C8—N1—H1N1 | 115.8 (11) | C11—C12—H12A | 119.7 |
| C4—N1—H1N1 | 115.7 (11) | C12—C13—C14 | 120.52 (11) |
| C8—N2—C9 | 120.30 (10) | C12—C13—H13A | 119.7 |
| C17—N3—C15 | 106.38 (10) | C14—C13—H13A | 119.7 |
| C17—N3—C18 | 125.57 (10) | C13—C14—C9 | 118.92 (11) |
| C15—N3—C18 | 127.95 (10) | C13—C14—C15 | 127.81 (11) |
| C17—N4—C16 | 104.21 (10) | C9—C14—C15 | 113.27 (10) |
| C2—C1—C6 | 118.33 (11) | N3—C15—C16 | 105.18 (10) |
| C2—C1—H1A | 120.8 | N3—C15—C14 | 132.51 (11) |
| C6—C1—H1A | 120.8 | C16—C15—C14 | 122.30 (10) |
| C3—C2—C1 | 121.03 (11) | N4—C16—C15 | 110.61 (10) |
| C3—C2—H2A | 119.5 | N4—C16—C8 | 130.39 (11) |
| C1—C2—H2A | 119.5 | C15—C16—C8 | 118.97 (11) |
| C2—C3—C4 | 120.89 (11) | N4—C17—N3 | 113.62 (11) |
| C2—C3—H3A | 119.6 | N4—C17—H17A | 123.2 |
| C4—C3—H3A | 119.6 | N3—C17—H17A | 123.2 |
| C5—C4—C3 | 118.17 (11) | N3—C18—C19 | 113.99 (10) |
| C5—C4—N1 | 124.73 (10) | N3—C18—H18A | 108.8 |
| C3—C4—N1 | 117.10 (11) | C19—C18—H18A | 108.8 |
| C6—C5—C4 | 120.25 (11) | N3—C18—H18B | 108.8 |
| C6—C5—H5A | 119.9 | C19—C18—H18B | 108.8 |
| C4—C5—H5A | 119.9 | H18A—C18—H18B | 107.6 |
| C1—C6—C5 | 121.31 (11) | C21—C19—C20 | 111.64 (11) |
| C1—C6—C7 | 121.77 (10) | C21—C19—C18 | 110.94 (10) |
| C5—C6—C7 | 116.91 (10) | C20—C19—C18 | 108.90 (10) |
| O1—C7—O2 | 122.72 (11) | C21—C19—H19A | 108.4 |
| O1—C7—C6 | 122.59 (10) | C20—C19—H19A | 108.4 |
| O2—C7—C6 | 114.69 (10) | C18—C19—H19A | 108.4 |
| N2—C8—N1 | 120.53 (10) | C19—C20—H20A | 109.5 |
| N2—C8—C16 | 120.36 (10) | C19—C20—H20B | 109.5 |
| N1—C8—C16 | 119.10 (10) | H20A—C20—H20B | 109.5 |
| N2—C9—C10 | 116.40 (11) | C19—C20—H20C | 109.5 |
| N2—C9—C14 | 124.70 (11) | H20A—C20—H20C | 109.5 |
| C10—C9—C14 | 118.89 (11) | H20B—C20—H20C | 109.5 |
| C11—C10—C9 | 120.90 (12) | C19—C21—H21A | 109.5 |
| C11—C10—H10A | 119.6 | C19—C21—H21B | 109.5 |
| C9—C10—H10A | 119.6 | H21A—C21—H21B | 109.5 |
| C10—C11—C12 | 120.20 (12) | C19—C21—H21C | 109.5 |
| C10—C11—H11A | 119.9 | H21A—C21—H21C | 109.5 |
| C12—C11—H11A | 119.9 | H21B—C21—H21C | 109.5 |
| C6—C1—C2—C3 | −1.50 (19) | N2—C9—C14—C13 | 177.58 (11) |
| C1—C2—C3—C4 | 0.8 (2) | C10—C9—C14—C13 | −1.70 (16) |
| C2—C3—C4—C5 | 0.58 (18) | N2—C9—C14—C15 | −2.51 (16) |
| C2—C3—C4—N1 | −179.23 (12) | C10—C9—C14—C15 | 178.21 (10) |
| C8—N1—C4—C5 | −3.85 (19) | C17—N3—C15—C16 | −0.25 (12) |
| C8—N1—C4—C3 | 175.94 (11) | C18—N3—C15—C16 | 176.10 (11) |
| C3—C4—C5—C6 | −1.29 (17) | C17—N3—C15—C14 | −179.22 (12) |
| N1—C4—C5—C6 | 178.50 (11) | C18—N3—C15—C14 | −2.9 (2) |
| C2—C1—C6—C5 | 0.77 (18) | C13—C14—C15—N3 | 0.0 (2) |
| C2—C1—C6—C7 | −178.19 (11) | C9—C14—C15—N3 | −179.85 (11) |
| C4—C5—C6—C1 | 0.63 (17) | C13—C14—C15—C16 | −178.78 (11) |
| C4—C5—C6—C7 | 179.64 (10) | C9—C14—C15—C16 | 1.32 (16) |
| C1—C6—C7—O1 | 164.52 (12) | C17—N4—C16—C15 | −0.49 (13) |
| C5—C6—C7—O1 | −14.48 (16) | C17—N4—C16—C8 | 177.45 (12) |
| C1—C6—C7—O2 | −15.91 (16) | N3—C15—C16—N4 | 0.46 (13) |
| C5—C6—C7—O2 | 165.09 (10) | C14—C15—C16—N4 | 179.56 (10) |
| C9—N2—C8—N1 | −176.50 (10) | N3—C15—C16—C8 | −177.74 (10) |
| C9—N2—C8—C16 | 2.20 (16) | C14—C15—C16—C8 | 1.36 (17) |
| C4—N1—C8—N2 | 3.04 (18) | N2—C8—C16—N4 | 178.96 (11) |
| C4—N1—C8—C16 | −175.68 (11) | N1—C8—C16—N4 | −2.32 (18) |
| C8—N2—C9—C10 | −179.91 (10) | N2—C8—C16—C15 | −3.25 (16) |
| C8—N2—C9—C14 | 0.79 (17) | N1—C8—C16—C15 | 175.47 (10) |
| N2—C9—C10—C11 | −178.40 (11) | C16—N4—C17—N3 | 0.33 (13) |
| C14—C9—C10—C11 | 0.94 (18) | C15—N3—C17—N4 | −0.05 (13) |
| C9—C10—C11—C12 | 0.58 (19) | C18—N3—C17—N4 | −176.51 (10) |
| C10—C11—C12—C13 | −1.35 (19) | C17—N3—C18—C19 | −104.71 (13) |
| C11—C12—C13—C14 | 0.55 (18) | C15—N3—C18—C19 | 79.60 (15) |
| C12—C13—C14—C9 | 0.97 (17) | N3—C18—C19—C21 | 71.13 (13) |
| C12—C13—C14—C15 | −178.92 (11) | N3—C18—C19—C20 | −165.62 (11) |
| H··· | ||||
| N1—H1N1···O1i | 0.860 (16) | 2.114 (17) | 2.9436 (14) | 161.8 (15) |
| O2—H1O2···N4ii | 0.99 (2) | 1.71 (2) | 2.6926 (13) | 172 (2) |
| C3—H3A···O1i | 0.93 | 2.42 | 3.1998 (15) | 142 |
| C5—H5A···N2 | 0.93 | 2.21 | 2.8337 (16) | 123 |
| C1—H1A···Cg2iii | 0.93 | 2.94 | 3.3877 (14) | 111 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.860 (16) | 2.114 (17) | 2.9436 (14) | 161.8 (15) |
| O2—H1 | 0.99 (2) | 1.71 (2) | 2.6926 (13) | 172 (2) |
| C3—H3 | 0.93 | 2.42 | 3.1998 (15) | 142 |
| C5—H5 | 0.93 | 2.21 | 2.8337 (16) | 123 |
| C1—H1 | 0.93 | 2.94 | 3.3877 (14) | 111 |
Symmetry codes: (i) ; (ii) ; (iii) .