Literature DB >> 21523077

1-Isobutyl-N,N-dimethyl-1H-imidazo[4,5-c]quinolin-4-amine.

Wan-Sin Loh, Hoong-Kun Fun, Reshma Kayarmar, S Viveka, G K Nagaraja.   

Abstract

In the title compound, C(16)H(20)N(4), the 1H-imidazo[4,5-c]quinoline ring system is approximately planar, with a maximum deviation of 0.0719 (15) Å. An intra-molecular C-H⋯N hydrogen bond contributes to the stabilization of the mol-ecule, forming an S(6) ring motif. In the crystal, the mol-ecules are stacked along the b axis through weak aromatic π-π inter-actions between benzene and imidazole and benzene and pyridine rings [centroid-centroid distances = 3.6055 (10) and 3.5342 (10) Å, respectively].

Entities:  

Year:  2011        PMID: 21523077      PMCID: PMC3051498          DOI: 10.1107/S160053681100153X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to quinolines and their microbial activity, see: Jampilek et al. (2005 ▶); Gershon et al. (2004 ▶); Dardari et al. (2004 ▶). For the syntheses of 1H-imidazo[4,5-c]quinolin-4-amines, see: Gabriel (1918 ▶); Izumi et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H20N4 M = 268.36 Monoclinic, a = 9.2804 (2) Å b = 18.5492 (6) Å c = 8.5147 (2) Å β = 101.051 (2)° V = 1438.57 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.39 × 0.29 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.971, T max = 0.989 13134 measured reflections 3456 independent reflections 2271 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.146 S = 1.02 3456 reflections 185 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100153X/is2656sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100153X/is2656Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20N4F(000) = 576
Mr = 268.36Dx = 1.239 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3031 reflections
a = 9.2804 (2) Åθ = 2.2–27.4°
b = 18.5492 (6) ŵ = 0.08 mm1
c = 8.5147 (2) ÅT = 296 K
β = 101.051 (2)°Block, colourless
V = 1438.57 (7) Å30.39 × 0.29 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3456 independent reflections
Radiation source: fine-focus sealed tube2271 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 28.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.971, Tmax = 0.989k = −19→24
13134 measured reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0604P)2 + 0.3608P] where P = (Fo2 + 2Fc2)/3
3456 reflections(Δ/σ)max = 0.001
185 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.44302 (15)0.08084 (8)0.74563 (17)0.0430 (4)
N30.31258 (17)0.18631 (8)0.3740 (2)0.0512 (4)
N20.51431 (15)0.14182 (8)0.30069 (17)0.0418 (4)
N40.22238 (16)0.14021 (9)0.68830 (19)0.0520 (4)
C70.35046 (18)0.12102 (9)0.6440 (2)0.0400 (4)
C60.57198 (17)0.05715 (9)0.7062 (2)0.0386 (4)
C50.66567 (19)0.01562 (10)0.8208 (2)0.0467 (5)
H5A0.63870.00590.91840.056*
C40.7957 (2)−0.01084 (11)0.7918 (2)0.0500 (5)
H4A0.8563−0.03780.86980.060*
C30.8376 (2)0.00247 (10)0.6460 (2)0.0499 (5)
H3A0.9262−0.01550.62690.060*
C20.74870 (18)0.04200 (9)0.5307 (2)0.0428 (4)
H2A0.77710.05000.43330.051*
C10.61517 (17)0.07070 (8)0.55699 (19)0.0358 (4)
C90.51360 (17)0.11474 (8)0.45202 (19)0.0363 (4)
C80.38711 (18)0.14192 (9)0.4938 (2)0.0395 (4)
C100.3921 (2)0.18403 (10)0.2632 (2)0.0510 (5)
H10A0.36770.20900.16700.061*
C110.61699 (19)0.12704 (10)0.1942 (2)0.0449 (4)
H11A0.56820.13620.08480.054*
H11B0.64340.07640.20240.054*
C120.7563 (2)0.17189 (10)0.2307 (2)0.0466 (4)
H12A0.79800.16690.34500.056*
C130.8672 (2)0.14245 (12)0.1367 (3)0.0684 (6)
H13A0.88400.09230.16090.103*
H13B0.95790.16840.16570.103*
H13C0.82980.14810.02420.103*
C140.7246 (3)0.25132 (11)0.1958 (3)0.0689 (6)
H14A0.81370.27850.22540.103*
H14B0.65390.26800.25640.103*
H14C0.68620.25760.08370.103*
C150.1048 (2)0.17851 (13)0.5909 (3)0.0690 (6)
H15A0.12120.18070.48300.103*
H15B0.10020.22650.63180.103*
H15C0.01390.15400.59230.103*
C160.1954 (2)0.11825 (15)0.8435 (3)0.0716 (7)
H16A0.28650.11750.91930.107*
H16B0.15270.07090.83550.107*
H16C0.12920.15170.87840.107*
U11U22U33U12U13U23
N10.0436 (8)0.0471 (8)0.0387 (8)0.0035 (7)0.0084 (6)−0.0017 (7)
N30.0483 (8)0.0502 (9)0.0556 (10)0.0094 (7)0.0110 (7)0.0128 (8)
N20.0434 (8)0.0424 (8)0.0401 (8)−0.0001 (6)0.0093 (6)0.0054 (7)
N40.0468 (8)0.0622 (10)0.0497 (10)0.0129 (8)0.0161 (7)0.0038 (8)
C70.0396 (9)0.0384 (9)0.0425 (10)−0.0003 (7)0.0089 (7)−0.0055 (8)
C60.0388 (8)0.0368 (9)0.0395 (9)−0.0017 (7)0.0058 (7)−0.0033 (7)
C50.0525 (11)0.0512 (11)0.0354 (10)0.0042 (9)0.0062 (8)0.0028 (8)
C40.0479 (10)0.0540 (11)0.0456 (11)0.0095 (9)0.0023 (8)0.0075 (9)
C30.0428 (10)0.0512 (11)0.0568 (12)0.0086 (8)0.0126 (8)0.0068 (9)
C20.0446 (9)0.0405 (9)0.0453 (10)0.0015 (8)0.0137 (8)0.0049 (8)
C10.0376 (8)0.0309 (8)0.0385 (9)−0.0022 (7)0.0064 (7)−0.0010 (7)
C90.0410 (9)0.0311 (8)0.0367 (9)−0.0036 (7)0.0069 (7)0.0000 (7)
C80.0400 (9)0.0342 (8)0.0432 (10)0.0001 (7)0.0052 (7)0.0016 (8)
C100.0502 (10)0.0514 (11)0.0508 (11)0.0071 (9)0.0080 (9)0.0145 (9)
C110.0500 (10)0.0485 (10)0.0368 (10)0.0018 (8)0.0100 (8)0.0018 (8)
C120.0483 (10)0.0483 (10)0.0449 (10)0.0000 (8)0.0132 (8)0.0083 (8)
C130.0610 (13)0.0689 (14)0.0824 (16)0.0028 (11)0.0312 (12)0.0030 (13)
C140.0788 (15)0.0514 (12)0.0844 (17)−0.0004 (11)0.0352 (13)0.0129 (12)
C150.0460 (11)0.0844 (16)0.0790 (16)0.0166 (11)0.0183 (10)0.0156 (13)
C160.0606 (13)0.1034 (19)0.0566 (13)0.0146 (12)0.0256 (11)0.0048 (13)
N1—C71.325 (2)C1—C91.425 (2)
N1—C61.376 (2)C9—C81.385 (2)
N3—C101.305 (2)C10—H10A0.9300
N3—C81.388 (2)C11—C121.519 (3)
N2—C101.365 (2)C11—H11A0.9700
N2—C91.384 (2)C11—H11B0.9700
N2—C111.461 (2)C12—C141.521 (3)
N4—C71.361 (2)C12—C131.521 (3)
N4—C151.427 (2)C12—H12A0.9800
N4—C161.450 (2)C13—H13A0.9600
C7—C81.439 (2)C13—H13B0.9600
C6—C51.406 (2)C13—H13C0.9600
C6—C11.426 (2)C14—H14A0.9600
C5—C41.368 (2)C14—H14B0.9600
C5—H5A0.9300C14—H14C0.9600
C4—C31.393 (3)C15—H15A0.9600
C4—H4A0.9300C15—H15B0.9600
C3—C21.368 (2)C15—H15C0.9600
C3—H3A0.9300C16—H16A0.9600
C2—C11.405 (2)C16—H16B0.9600
C2—H2A0.9300C16—H16C0.9600
C7—N1—C6120.37 (15)N2—C10—H10A122.9
C10—N3—C8103.93 (14)N2—C11—C12113.65 (15)
C10—N2—C9105.91 (14)N2—C11—H11A108.8
C10—N2—C11125.01 (15)C12—C11—H11A108.8
C9—N2—C11129.00 (14)N2—C11—H11B108.8
C7—N4—C15125.46 (16)C12—C11—H11B108.8
C7—N4—C16119.42 (16)H11A—C11—H11B107.7
C15—N4—C16115.06 (16)C11—C12—C14111.44 (16)
N1—C7—N4117.22 (16)C11—C12—C13109.34 (16)
N1—C7—C8119.85 (15)C14—C12—C13111.73 (17)
N4—C7—C8122.93 (16)C11—C12—H12A108.1
N1—C6—C5117.17 (15)C14—C12—H12A108.1
N1—C6—C1124.58 (15)C13—C12—H12A108.1
C5—C6—C1118.24 (15)C12—C13—H13A109.5
C4—C5—C6121.37 (17)C12—C13—H13B109.5
C4—C5—H5A119.3H13A—C13—H13B109.5
C6—C5—H5A119.3C12—C13—H13C109.5
C5—C4—C3120.26 (17)H13A—C13—H13C109.5
C5—C4—H4A119.9H13B—C13—H13C109.5
C3—C4—H4A119.9C12—C14—H14A109.5
C2—C3—C4120.10 (17)C12—C14—H14B109.5
C2—C3—H3A119.9H14A—C14—H14B109.5
C4—C3—H3A119.9C12—C14—H14C109.5
C3—C2—C1121.20 (16)H14A—C14—H14C109.5
C3—C2—H2A119.4H14B—C14—H14C109.5
C1—C2—H2A119.4N4—C15—H15A109.5
C2—C1—C9127.93 (15)N4—C15—H15B109.5
C2—C1—C6118.81 (15)H15A—C15—H15B109.5
C9—C1—C6113.24 (14)N4—C15—H15C109.5
N2—C9—C8105.21 (14)H15A—C15—H15C109.5
N2—C9—C1132.15 (15)H15B—C15—H15C109.5
C8—C9—C1122.60 (15)N4—C16—H16A109.5
C9—C8—N3110.77 (15)N4—C16—H16B109.5
C9—C8—C7119.13 (15)H16A—C16—H16B109.5
N3—C8—C7130.09 (15)N4—C16—H16C109.5
N3—C10—N2114.14 (16)H16A—C16—H16C109.5
N3—C10—H10A122.9H16B—C16—H16C109.5
C6—N1—C7—N4177.51 (15)C11—N2—C9—C16.5 (3)
C6—N1—C7—C8−2.0 (2)C2—C1—C9—N2−0.3 (3)
C15—N4—C7—N1−175.07 (19)C6—C1—C9—N2178.26 (16)
C16—N4—C7—N11.9 (3)C2—C1—C9—C8−177.77 (16)
C15—N4—C7—C84.4 (3)C6—C1—C9—C80.8 (2)
C16—N4—C7—C8−178.62 (18)N2—C9—C8—N3−1.55 (19)
C7—N1—C6—C5179.12 (15)C1—C9—C8—N3176.52 (15)
C7—N1—C6—C1−2.1 (3)N2—C9—C8—C7177.37 (14)
N1—C6—C5—C4179.43 (17)C1—C9—C8—C7−4.6 (2)
C1—C6—C5—C40.5 (3)C10—N3—C8—C91.2 (2)
C6—C5—C4—C3−0.6 (3)C10—N3—C8—C7−177.58 (18)
C5—C4—C3—C2−0.1 (3)N1—C7—C8—C95.2 (2)
C4—C3—C2—C10.8 (3)N4—C7—C8—C9−174.26 (16)
C3—C2—C1—C9177.63 (17)N1—C7—C8—N3−176.11 (17)
C3—C2—C1—C6−0.8 (3)N4—C7—C8—N34.4 (3)
N1—C6—C1—C2−178.65 (15)C8—N3—C10—N2−0.4 (2)
C5—C6—C1—C20.1 (2)C9—N2—C10—N3−0.6 (2)
N1—C6—C1—C92.7 (2)C11—N2—C10—N3176.48 (16)
C5—C6—C1—C9−178.54 (15)C10—N2—C11—C12100.8 (2)
C10—N2—C9—C81.26 (18)C9—N2—C11—C12−82.9 (2)
C11—N2—C9—C8−175.65 (16)N2—C11—C12—C14−67.1 (2)
C10—N2—C9—C1−176.54 (18)N2—C11—C12—C13168.91 (16)
D—H···AD—HH···AD···AD—H···A
C15—H15A···N30.962.162.918 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15A⋯N30.962.162.918 (3)135
  6 in total

1.  A short history of SHELX.

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2.  Quinaldine derivatives: preparation and biological activity.

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3.  Synergistic mixtures of fungitoxic monochloro and dichloro-8-quinolinols against five fungi.

Authors:  Herman Gershon; Muriel Gershon; Donald D Clarke
Journal:  Mycopathologia       Date:  2004-07       Impact factor: 2.574

4.  1H-Imidazo[4,5-c]quinoline derivatives as novel potent TNF-alpha suppressors: synthesis and structure-activity relationship of 1-, 2-and 4-substituted 1H-imidazo[4,5-c]quinolines or 1H-imidazo[4,5-c]pyridines.

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Journal:  Bioorg Med Chem       Date:  2003-06-12       Impact factor: 3.641

5.  Antileishmanial activity of a new 8-hydroxyquinoline derivative designed 7-[5'-(3'-phenylisoxazolino)methyl]-8-hydroxyquinoline: preliminary study.

Authors:  Zainaba Dardari; Meryem Lemrani; Abdelmejid Bahloul; Abdelfatah Sebban; Mohammed Hassar; Said Kitane; Mohammed Berrada; Mohammed Boudouma
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6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  3 in total

1.  4-Hydrazinyl-1-isobutyl-1H-imidazo[4,5-c]quinoline.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; Reshma Kayarmar; S Viveka; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

2.  4-Chloro-benzaldehyde (1-isobutyl-1H-imidazo[4,5-c]quinolin-4-yl)hydrazone monohydrate.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; Reshma Kayarmar; S Viveka; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

3.  1-Isobutyl-4-meth-oxy-1H-imidazo[4,5-c]quinoline.

Authors:  Hoong-Kun Fun; Wan-Sin Loh; Reshma Kayarmar; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  3 in total

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