Literature DB >> 21523078

4-Hydrazinyl-1-isobutyl-1H-imidazo[4,5-c]quinoline.

Wan-Sin Loh, Hoong-Kun Fun, Reshma Kayarmar, S Viveka, G K Nagaraja.   

Abstract

In the title compound, C(14)H(17)N(5), the 1H-imidazo[4,5-c]quinoline ring system is essentially planar, with a maximum deviation of 0.0325 (7) Å. In the crystal, a pair of inter-molecular N-H⋯N hydrogen bonds link neighbouring mol-ecules, forming an inversion dimer and generate an R(2) (2)(10) ring motif. These dimers are further connected into a chain along the b axis via inter-molecular C-H⋯N hydrogen bonds, resulting in an R(2) (2)(14) ring motif.

Entities:  

Year:  2011        PMID: 21523078      PMCID: PMC3051739          DOI: 10.1107/S1600536811001553

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to quinolines and their microbial activity, see: Roth & Fenner (2000 ▶); Miller et al. (1999 ▶); Hirota et al. (2002 ▶). For bond-length data, see: Allen et al. (1987 ▶). For a related structure, see: Loh et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C14H17N5 M = 255.33 Triclinic, a = 5.4735 (2) Å b = 9.1275 (3) Å c = 13.3814 (5) Å α = 98.076 (1)° β = 101.787 (1)° γ = 96.269 (1)° V = 641.35 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.68 × 0.42 × 0.09 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.945, T max = 0.992 20646 measured reflections 5797 independent reflections 4836 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.137 S = 1.12 5797 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001553/is2657sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001553/is2657Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17N5Z = 2
Mr = 255.33F(000) = 272
Triclinic, P1Dx = 1.322 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.4735 (2) ÅCell parameters from 9851 reflections
b = 9.1275 (3) Åθ = 2.5–35.6°
c = 13.3814 (5) ŵ = 0.08 mm1
α = 98.076 (1)°T = 100 K
β = 101.787 (1)°Plate, yellow
γ = 96.269 (1)°0.68 × 0.42 × 0.09 mm
V = 641.35 (4) Å3
Bruker SMART APEXII DUO CCD area-detector diffractometer5797 independent reflections
Radiation source: fine-focus sealed tube4836 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 35.6°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.945, Tmax = 0.992k = −14→14
20646 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0821P)2 + 0.0687P] where P = (Fo2 + 2Fc2)/3
5797 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N30.66263 (12)0.41343 (6)0.40530 (5)0.01739 (12)
N20.83913 (11)0.28950 (6)0.28779 (4)0.01494 (11)
N10.29129 (11)0.04458 (6)0.39588 (4)0.01382 (11)
N40.27467 (12)0.27155 (7)0.49606 (5)0.01719 (12)
N50.09896 (12)0.21044 (7)0.54799 (5)0.01683 (11)
C90.66447 (12)0.18519 (7)0.31040 (5)0.01294 (11)
C10.58776 (12)0.02794 (7)0.27674 (5)0.01284 (11)
C20.68633 (13)−0.06582 (7)0.20610 (5)0.01545 (12)
C30.60210 (14)−0.21733 (7)0.18278 (5)0.01727 (13)
C40.41445 (14)−0.27919 (7)0.22854 (6)0.01769 (13)
C50.31322 (13)−0.19005 (7)0.29698 (5)0.01611 (12)
C60.39780 (12)−0.03437 (7)0.32402 (5)0.01301 (11)
C70.37122 (12)0.18938 (7)0.42576 (5)0.01334 (11)
C80.55945 (13)0.26428 (7)0.38309 (5)0.01385 (11)
C100.82902 (15)0.42279 (7)0.34703 (5)0.01813 (13)
C111.00391 (12)0.26889 (7)0.21544 (5)0.01498 (12)
C120.86854 (13)0.26095 (7)0.10230 (5)0.01536 (12)
C131.04956 (16)0.22187 (9)0.03277 (6)0.02337 (15)
C140.77216 (15)0.40809 (8)0.08500 (6)0.02100 (14)
H120.714 (2)0.1783 (13)0.0858 (9)0.022 (3)*
H50.188 (2)−0.2330 (14)0.3351 (9)0.023 (3)*
H11A1.082 (2)0.1765 (14)0.2249 (9)0.021 (3)*
H11B1.135 (2)0.3583 (12)0.2340 (8)0.016 (2)*
H30.684 (3)−0.2852 (15)0.1362 (10)0.030 (3)*
H14A0.647 (2)0.4297 (15)0.1284 (10)0.028 (3)*
H20.824 (3)−0.0234 (15)0.1744 (10)0.028 (3)*
H14B0.684 (2)0.4015 (15)0.0128 (10)0.027 (3)*
H13A1.198 (3)0.3048 (16)0.0476 (10)0.035 (3)*
H13B0.967 (3)0.2083 (16)−0.0425 (11)0.042 (4)*
H14C0.914 (3)0.4902 (15)0.1002 (10)0.027 (3)*
H2N5−0.034 (3)0.1553 (16)0.5007 (11)0.034 (3)*
H1N50.168 (2)0.1427 (14)0.5847 (9)0.026 (3)*
H40.351 (3)−0.3897 (15)0.2119 (11)0.033 (3)*
H1N40.338 (3)0.3668 (17)0.5163 (11)0.039 (4)*
H100.947 (2)0.5153 (13)0.3482 (9)0.023 (3)*
H13C1.111 (3)0.1258 (16)0.0456 (11)0.036 (3)*
U11U22U33U12U13U23
N30.0241 (3)0.0107 (2)0.0180 (2)−0.00015 (19)0.0094 (2)−0.00037 (18)
N20.0186 (2)0.0106 (2)0.0163 (2)−0.00019 (17)0.00804 (18)0.00044 (17)
N10.0166 (2)0.0107 (2)0.0146 (2)0.00162 (17)0.00618 (18)−0.00006 (16)
N40.0236 (3)0.0116 (2)0.0184 (2)0.00107 (19)0.0123 (2)−0.00060 (18)
N50.0190 (3)0.0158 (2)0.0174 (2)0.00174 (19)0.00878 (19)0.00190 (18)
C90.0160 (3)0.0101 (2)0.0132 (2)0.00083 (19)0.00551 (19)0.00118 (17)
C10.0152 (3)0.0103 (2)0.0134 (2)0.00142 (18)0.00501 (19)0.00076 (18)
C20.0191 (3)0.0117 (2)0.0168 (3)0.0018 (2)0.0085 (2)0.00019 (19)
C30.0211 (3)0.0121 (2)0.0196 (3)0.0017 (2)0.0096 (2)−0.0009 (2)
C40.0209 (3)0.0107 (2)0.0215 (3)0.0000 (2)0.0091 (2)−0.0015 (2)
C50.0180 (3)0.0112 (2)0.0195 (3)−0.0001 (2)0.0082 (2)−0.0001 (2)
C60.0145 (2)0.0109 (2)0.0140 (2)0.00148 (18)0.00531 (19)0.00056 (18)
C70.0164 (3)0.0112 (2)0.0131 (2)0.00201 (19)0.00547 (19)0.00073 (18)
C80.0180 (3)0.0106 (2)0.0135 (2)0.00126 (19)0.00616 (19)0.00052 (18)
C100.0244 (3)0.0108 (2)0.0195 (3)−0.0011 (2)0.0096 (2)−0.0006 (2)
C110.0157 (3)0.0136 (2)0.0166 (2)0.0008 (2)0.0067 (2)0.00201 (19)
C120.0174 (3)0.0133 (2)0.0162 (2)0.0012 (2)0.0064 (2)0.00193 (19)
C130.0275 (4)0.0252 (3)0.0210 (3)0.0058 (3)0.0129 (3)0.0032 (2)
C140.0244 (3)0.0170 (3)0.0226 (3)0.0049 (2)0.0055 (2)0.0048 (2)
N3—C101.3179 (9)C3—H31.020 (13)
N3—C81.3821 (8)C4—C51.3798 (9)
N2—C101.3687 (9)C4—H41.008 (14)
N2—C91.3828 (8)C5—C61.4170 (9)
N2—C111.4590 (9)C5—H51.011 (12)
N1—C71.3236 (8)C7—C81.4322 (9)
N1—C61.3820 (8)C10—H101.002 (12)
N4—C71.3484 (8)C11—C121.5315 (9)
N4—N51.4085 (9)C11—H11A0.999 (12)
N4—H1N40.883 (15)C11—H11B0.993 (11)
N5—H2N50.909 (14)C12—C141.5258 (10)
N5—H1N50.909 (13)C12—C131.5282 (10)
C9—C81.3854 (9)C12—H121.037 (12)
C9—C11.4314 (9)C13—H13A1.014 (14)
C1—C21.4138 (9)C13—H13B1.000 (14)
C1—C61.4302 (9)C13—H13C0.998 (14)
C2—C31.3795 (9)C14—H14A1.001 (13)
C2—H21.008 (14)C14—H14B0.978 (13)
C3—C41.4058 (10)C14—H14C0.985 (14)
C10—N3—C8103.93 (5)N1—C7—C8121.10 (6)
C10—N2—C9106.32 (6)N4—C7—C8117.90 (6)
C10—N2—C11124.73 (6)N3—C8—C9111.27 (6)
C9—N2—C11128.95 (5)N3—C8—C7128.47 (6)
C7—N1—C6118.55 (6)C9—C8—C7120.25 (6)
C7—N4—N5123.58 (6)N3—C10—N2113.44 (6)
C7—N4—H1N4118.2 (10)N3—C10—H10124.7 (7)
N5—N4—H1N4117.8 (10)N2—C10—H10121.7 (7)
N4—N5—H2N5109.3 (9)N2—C11—C12113.35 (6)
N4—N5—H1N5109.3 (8)N2—C11—H11A108.6 (7)
H2N5—N5—H1N5104.1 (12)C12—C11—H11A110.6 (7)
N2—C9—C8105.04 (5)N2—C11—H11B106.1 (6)
N2—C9—C1134.08 (6)C12—C11—H11B107.6 (6)
C8—C9—C1120.87 (6)H11A—C11—H11B110.5 (9)
C2—C1—C6119.84 (6)C14—C12—C13111.16 (6)
C2—C1—C9126.25 (6)C14—C12—C11110.90 (5)
C6—C1—C9113.89 (6)C13—C12—C11108.94 (6)
C3—C2—C1120.58 (6)C14—C12—H12107.7 (6)
C3—C2—H2119.1 (7)C13—C12—H12110.1 (7)
C1—C2—H2120.3 (7)C11—C12—H12108.0 (6)
C2—C3—C4119.88 (6)C12—C13—H13A109.6 (8)
C2—C3—H3120.0 (8)C12—C13—H13B112.4 (9)
C4—C3—H3120.0 (8)H13A—C13—H13B108.1 (11)
C5—C4—C3120.75 (6)C12—C13—H13C109.9 (8)
C5—C4—H4118.6 (8)H13A—C13—H13C109.8 (12)
C3—C4—H4120.6 (8)H13B—C13—H13C106.9 (12)
C4—C5—C6120.97 (6)C12—C14—H14A110.3 (7)
C4—C5—H5122.2 (7)C12—C14—H14B110.4 (8)
C6—C5—H5116.6 (7)H14A—C14—H14B106.7 (10)
N1—C6—C5116.69 (6)C12—C14—H14C110.4 (8)
N1—C6—C1125.32 (6)H14A—C14—H14C111.1 (11)
C5—C6—C1117.98 (6)H14B—C14—H14C107.9 (11)
N1—C7—N4120.99 (6)
C10—N2—C9—C8−0.05 (7)C6—N1—C7—N4−179.65 (6)
C11—N2—C9—C8−179.38 (6)C6—N1—C7—C81.52 (10)
C10—N2—C9—C1−178.69 (7)N5—N4—C7—N14.70 (11)
C11—N2—C9—C11.98 (12)N5—N4—C7—C8−176.43 (6)
N2—C9—C1—C20.80 (12)C10—N3—C8—C9−0.50 (8)
C8—C9—C1—C2−177.67 (6)C10—N3—C8—C7178.70 (7)
N2—C9—C1—C6178.97 (7)N2—C9—C8—N30.34 (8)
C8—C9—C1—C60.50 (9)C1—C9—C8—N3179.20 (6)
C6—C1—C2—C3−0.43 (10)N2—C9—C8—C7−178.94 (6)
C9—C1—C2—C3177.64 (6)C1—C9—C8—C7−0.07 (10)
C1—C2—C3—C40.77 (11)N1—C7—C8—N3179.87 (6)
C2—C3—C4—C5−0.14 (11)N4—C7—C8—N31.00 (11)
C3—C4—C5—C6−0.84 (11)N1—C7—C8—C9−0.99 (10)
C7—N1—C6—C5177.81 (6)N4—C7—C8—C9−179.86 (6)
C7—N1—C6—C1−1.08 (10)C8—N3—C10—N20.48 (8)
C4—C5—C6—N1−177.81 (6)C9—N2—C10—N3−0.28 (8)
C4—C5—C6—C11.16 (10)C11—N2—C10—N3179.09 (6)
C2—C1—C6—N1178.35 (6)C10—N2—C11—C12−101.17 (8)
C9—C1—C6—N10.05 (10)C9—N2—C11—C1278.06 (8)
C2—C1—C6—C5−0.52 (10)N2—C11—C12—C1463.65 (7)
C9—C1—C6—C5−178.82 (6)N2—C11—C12—C13−173.69 (6)
D—H···AD—HH···AD···AD—H···A
N4—H1N4···N3i0.883 (16)2.130 (15)2.9429 (9)152.9 (15)
C5—H5···N5ii1.012 (12)2.437 (11)3.3700 (10)152.9 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H1N4⋯N3i0.883 (16)2.130 (15)2.9429 (9)152.9 (15)
C5—H5⋯N5ii1.012 (12)2.437 (11)3.3700 (10)152.9 (10)

Symmetry codes: (i) ; (ii) .

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