Literature DB >> 21522778

(S)-N-Benzyl-2-methyl-1,2,3,4-tetra-hydro-isoquinoline-3-carboxamide.

Tricia Naicker, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.   

Abstract

The structure of the title compound, C(18)H(20)N(2)O, at 173 K has hexa-gonal (P6(1)) symmetry. The N-containing six-membered ring assumes a half-chair conformation. In the crystal, inter-molecular N-H⋯O hydrogen bonding via the amide groups cross-link the mol-ecules along the a axis. The absolute configuration was confirmed by 2D NMR studies.

Entities:  

Year:  2010        PMID: 21522778      PMCID: PMC3050362          DOI: 10.1107/S1600536810050361

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a precursor to chiral ligands involving a tetra­hydro­isoquinoline backbone. For the application of these ligands as catalysts, see: Chakka et al. (2009 ▶); Peters et al. (2010 ▶); Naicker et al. (2010a ▶). For related structures, see: Chakka et al. (2010 ▶). For a related structure with the same chiral centre and conformation of the six-membered ring, see: Naicker et al. (2010b ▶).

Experimental

Crystal data

C18H20N2O M = 280.36 Hexagonal, a = 10.1838 (13) Å c = 25.965 (3) Å V = 2332.1 (5) Å3 Z = 6 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.22 × 0.12 × 0.03 mm

Data collection

Bruker Kappa DUO APEXII diffractometer 18777 measured reflections 1759 independent reflections 1358 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.088 S = 1.05 1759 reflections 195 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050361/hg2752sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050361/hg2752Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20N2ODx = 1.198 Mg m3
Mr = 280.36Melting point: 365 K
Hexagonal, P61Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 61Cell parameters from 18777 reflections
a = 10.1838 (13) Åθ = 2.3–27.2°
c = 25.965 (3) ŵ = 0.08 mm1
V = 2332.1 (5) Å3T = 173 K
Z = 6Needle, colourless
F(000) = 9000.22 × 0.12 × 0.03 mm
Bruker Kappa DUO APEXII diffractometer1358 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.059
graphiteθmax = 27.2°, θmin = 2.3°
0.5° φ scans and ω scansh = −13→12
18777 measured reflectionsk = −12→13
1759 independent reflectionsl = −33→33
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0377P)2 + 0.3273P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1759 reflectionsΔρmax = 0.14 e Å3
195 parametersΔρmin = −0.14 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0033 (7)
Experimental. Half sphere of data collected using SAINT strategy (Bruker, 2006). Crystal to detector distance = 40 mm; combination of φ and ω scans of 0.5°, 30 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.73695 (19)0.77313 (19)0.97396 (7)0.0450 (5)
N10.9118 (2)1.1026 (2)0.98992 (8)0.0385 (5)
N20.7085 (2)0.8382 (2)0.89310 (8)0.0362 (5)
H20.747 (3)0.915 (2)0.8671 (9)0.051 (8)*
C11.0391 (3)1.2586 (3)0.98885 (11)0.0465 (7)
H1A1.04021.30991.02140.056*
H1B1.02411.31390.96020.056*
C21.1898 (3)1.2671 (3)0.98225 (10)0.0406 (6)
C31.3244 (4)1.4003 (3)0.99539 (12)0.0537 (8)
H31.31971.48481.00870.064*
C41.4632 (3)1.4096 (3)0.98919 (13)0.0595 (8)
H41.55351.49990.99840.071*
C51.4714 (3)1.2876 (4)0.96964 (13)0.0581 (8)
H51.56711.29410.96520.070*
C61.3402 (3)1.1566 (3)0.95657 (11)0.0463 (7)
H61.34611.07250.94360.056*
C71.1987 (3)1.1457 (3)0.96216 (10)0.0374 (6)
C81.0561 (3)1.0021 (3)0.94725 (11)0.0378 (6)
H8A1.03560.92250.97300.045*
H8B1.07180.96680.91350.045*
C90.9188 (3)1.0240 (3)0.94379 (10)0.0345 (5)
H90.92831.08590.91260.041*
C100.7785 (3)0.8671 (3)0.93857 (10)0.0343 (5)
C110.5866 (3)0.6863 (3)0.87851 (10)0.0393 (6)
H11A0.51100.69580.85730.047*
H11B0.53490.62880.91000.047*
C120.6459 (3)0.6001 (3)0.84871 (9)0.0373 (6)
C130.7331 (4)0.5489 (4)0.87268 (12)0.0623 (9)
H130.75280.56550.90850.075*
C140.7920 (4)0.4739 (4)0.84516 (14)0.0685 (10)
H140.85230.44020.86220.082*
C150.7643 (4)0.4478 (4)0.79358 (13)0.0615 (9)
H150.80530.39670.77470.074*
C160.6769 (4)0.4962 (4)0.76946 (13)0.0680 (10)
H160.65650.47820.73370.082*
C170.6180 (4)0.5713 (3)0.79703 (12)0.0529 (7)
H170.55680.60370.77980.063*
C180.7705 (3)1.1059 (4)0.99296 (14)0.0573 (8)
H18A0.68461.00190.99350.086*
H18B0.76191.15940.96290.086*
H18C0.77001.15861.02450.086*
U11U22U33U12U13U23
O10.0379 (9)0.0402 (10)0.0409 (10)0.0076 (8)−0.0062 (8)0.0136 (8)
N10.0387 (12)0.0377 (11)0.0414 (12)0.0208 (10)0.0035 (9)0.0012 (9)
N20.0370 (11)0.0366 (11)0.0349 (11)0.0183 (9)−0.0024 (9)0.0071 (9)
C10.0571 (16)0.0354 (14)0.0488 (16)0.0245 (13)−0.0015 (13)−0.0017 (12)
C20.0453 (14)0.0287 (12)0.0408 (14)0.0133 (11)−0.0010 (12)0.0058 (11)
C30.065 (2)0.0303 (14)0.0522 (18)0.0137 (14)−0.0029 (14)0.0044 (12)
C40.0422 (16)0.0433 (16)0.065 (2)0.0006 (13)−0.0056 (15)0.0107 (15)
C50.0371 (15)0.0565 (18)0.067 (2)0.0128 (14)−0.0042 (14)0.0108 (16)
C60.0365 (14)0.0439 (15)0.0532 (17)0.0162 (12)0.0031 (12)0.0094 (13)
C70.0381 (13)0.0290 (12)0.0388 (13)0.0121 (11)0.0011 (11)0.0073 (11)
C80.0336 (12)0.0299 (12)0.0459 (14)0.0130 (11)0.0036 (11)−0.0001 (11)
C90.0349 (13)0.0321 (12)0.0340 (12)0.0149 (10)0.0029 (10)0.0071 (10)
C100.0315 (12)0.0360 (13)0.0356 (13)0.0170 (10)0.0005 (10)0.0067 (10)
C110.0295 (13)0.0442 (14)0.0403 (14)0.0156 (11)−0.0071 (11)0.0036 (11)
C120.0300 (12)0.0325 (13)0.0375 (14)0.0067 (10)0.0004 (11)0.0021 (11)
C130.073 (2)0.097 (3)0.0420 (17)0.061 (2)−0.0073 (15)−0.0093 (16)
C140.069 (2)0.089 (3)0.067 (2)0.054 (2)−0.0099 (18)−0.0217 (19)
C150.0525 (18)0.0532 (18)0.064 (2)0.0151 (15)0.0066 (16)−0.0209 (16)
C160.085 (3)0.0545 (19)0.0404 (16)0.0168 (18)−0.0052 (17)−0.0131 (15)
C170.0631 (19)0.0404 (15)0.0440 (16)0.0174 (14)−0.0140 (14)−0.0050 (13)
C180.0526 (17)0.067 (2)0.065 (2)0.0395 (16)0.0052 (15)−0.0012 (16)
O1—C101.239 (3)C8—H8A0.9900
N1—C181.458 (3)C8—H8B0.9900
N1—C91.462 (3)C9—C101.527 (3)
N1—C11.465 (3)C9—H91.0000
N2—C101.334 (3)C11—C121.504 (4)
N2—C111.469 (3)C11—H11A0.9900
N2—H20.957 (10)C11—H11B0.9900
C1—C21.503 (4)C12—C171.373 (4)
C1—H1A0.9900C12—C131.383 (4)
C1—H1B0.9900C13—C141.383 (4)
C2—C71.386 (4)C13—H130.9500
C2—C31.406 (4)C14—C151.367 (5)
C3—C41.378 (4)C14—H140.9500
C3—H30.9500C15—C161.365 (5)
C4—C51.382 (5)C15—H150.9500
C4—H40.9500C16—C171.385 (5)
C5—C61.377 (4)C16—H160.9500
C5—H50.9500C17—H170.9500
C6—C71.396 (4)C18—H18A0.9800
C6—H60.9500C18—H18B0.9800
C7—C81.508 (4)C18—H18C0.9800
C8—C91.524 (3)
C18—N1—C9112.1 (2)C8—C9—C10107.39 (19)
C18—N1—C1109.0 (2)N1—C9—H9109.5
C9—N1—C1108.61 (19)C8—C9—H9109.5
C10—N2—C11122.5 (2)C10—C9—H9109.5
C10—N2—H2119.4 (18)O1—C10—N2123.2 (2)
C11—N2—H2117.6 (18)O1—C10—C9121.5 (2)
N1—C1—C2112.9 (2)N2—C10—C9115.3 (2)
N1—C1—H1A109.0N2—C11—C12111.9 (2)
C2—C1—H1A109.0N2—C11—H11A109.2
N1—C1—H1B109.0C12—C11—H11A109.2
C2—C1—H1B109.0N2—C11—H11B109.2
H1A—C1—H1B107.8C12—C11—H11B109.2
C7—C2—C3119.0 (3)H11A—C11—H11B107.9
C7—C2—C1120.8 (2)C17—C12—C13117.6 (3)
C3—C2—C1120.2 (3)C17—C12—C11121.8 (3)
C4—C3—C2120.6 (3)C13—C12—C11120.6 (2)
C4—C3—H3119.7C12—C13—C14120.9 (3)
C2—C3—H3119.7C12—C13—H13119.5
C3—C4—C5120.1 (3)C14—C13—H13119.5
C3—C4—H4119.9C15—C14—C13120.6 (3)
C5—C4—H4119.9C15—C14—H14119.7
C6—C5—C4119.7 (3)C13—C14—H14119.7
C6—C5—H5120.2C16—C15—C14119.2 (3)
C4—C5—H5120.2C16—C15—H15120.4
C5—C6—C7121.0 (3)C14—C15—H15120.4
C5—C6—H6119.5C15—C16—C17120.2 (3)
C7—C6—H6119.5C15—C16—H16119.9
C2—C7—C6119.6 (2)C17—C16—H16119.9
C2—C7—C8120.0 (2)C12—C17—C16121.5 (3)
C6—C7—C8120.4 (2)C12—C17—H17119.3
C7—C8—C9112.5 (2)C16—C17—H17119.3
C7—C8—H8A109.1N1—C18—H18A109.5
C9—C8—H8A109.1N1—C18—H18B109.5
C7—C8—H8B109.1H18A—C18—H18B109.5
C9—C8—H8B109.1N1—C18—H18C109.5
H8A—C8—H8B107.8H18A—C18—H18C109.5
N1—C9—C8109.34 (19)H18B—C18—H18C109.5
N1—C9—C10111.7 (2)
C18—N1—C1—C2−176.3 (2)C1—N1—C9—C10−172.63 (19)
C9—N1—C1—C2−53.9 (3)C7—C8—C9—N1−48.2 (3)
N1—C1—C2—C720.3 (4)C7—C8—C9—C10−169.6 (2)
N1—C1—C2—C3−161.2 (2)C11—N2—C10—O1−7.5 (4)
C7—C2—C3—C4−1.0 (4)C11—N2—C10—C9170.4 (2)
C1—C2—C3—C4−179.6 (3)N1—C9—C10—O1−53.7 (3)
C2—C3—C4—C50.4 (5)C8—C9—C10—O166.2 (3)
C3—C4—C5—C6−0.2 (5)N1—C9—C10—N2128.3 (2)
C4—C5—C6—C70.8 (4)C8—C9—C10—N2−111.8 (2)
C3—C2—C7—C61.6 (4)C10—N2—C11—C12−94.2 (3)
C1—C2—C7—C6−179.9 (2)N2—C11—C12—C17−109.0 (3)
C3—C2—C7—C8−179.4 (2)N2—C11—C12—C1370.0 (3)
C1—C2—C7—C8−0.8 (4)C17—C12—C13—C141.2 (5)
C5—C6—C7—C2−1.5 (4)C11—C12—C13—C14−177.9 (3)
C5—C6—C7—C8179.4 (3)C12—C13—C14—C15−0.4 (6)
C2—C7—C8—C914.7 (3)C13—C14—C15—C16−0.3 (5)
C6—C7—C8—C9−166.2 (2)C14—C15—C16—C170.3 (5)
C18—N1—C9—C8−170.9 (2)C13—C12—C17—C16−1.1 (4)
C1—N1—C9—C868.7 (2)C11—C12—C17—C16177.9 (3)
C18—N1—C9—C10−52.2 (3)C15—C16—C17—C120.4 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.96 (2)1.92 (2)2.852 (3)165 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.96 (2)1.92 (2)2.852 (3)165 (3)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  {(1R,3S)-2-Benzyl-6,7-dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl}diphenyl-methanol.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-17

3.  (R)-4-Phenyl-2-[(S)-1,2,3,4-tetra-hydro-isoquinolin-3-yl]-4,5-dihydro-1,3-oxazole.

Authors:  Sai K Chakka; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  3 in total
  6 in total

1.  (S)-2-Benzyl-N-(2,6-diisopropyl-phen-yl)-1,2,3,4-tetra-hydro-isoquinoline-3-carboxamide.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  (3S)-2-Benzyl-3-carb-oxy-1,2,3,4-tetra-hydro-isoquinolinium chloride monohydrate.

Authors:  Tricia Naicker; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24

3.  (S)-Benzyl 3-phenyl-carbamoyl-1,2,3,4-tetra-hydro-isoquinoline-2-carboxyl-ate.

Authors:  Tricia Naicker; Madichaba Chelopo; Thavendran Govender; Hendrick G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

4.  2-[(1R,3S)-6,7-Dimeth-oxy-1-phenyl-1,2,3,4-tetra-hydro-isoquinolin-3-yl]-4-phenyl-1,3-thia-zole.

Authors:  Sunayna Pawar; Venugopala Katharigatta; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

5.  (S)-4-Phenyl-2-(1,2,3,4-tetra-hydro-isoquinolin-3-yl)-1,3-thia-zole.

Authors:  Sunayna Pawar; Pralav Bhatt; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

6.  (S)-4-tert-Butyl-2-(1,2,3,4-tetra-hydro-isoquinolin-3-yl)-1,3-thia-zole.

Authors:  Sunayna Pawar; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18
  6 in total

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