Literature DB >> 21522483

10-(2-Hy-droxy-eth-yl)-9-(2-hy-droxy-phen-yl)-3,3,6,6-tetra-methyl-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Antar A Abdelhamid, Shaaban K Mohamed, Ali N Khalilov, Atash V Gurbanov, Seik Weng Ng.   

Abstract

The dihydro-pyridine ring in the title compound, C(25)H(31)NO(4), adopts an envelope conformation with the methine C atom representing the flap. The cyclo-hexenone rings also adopt envelope conformations with the C atoms bearing the methyl C atoms representing the flaps. The phenolic hy-droxy group forms an intra-molecular hydrogen bond to one of the two keto O atoms. The hy-droxy group of the N-bonded alkyl chain forms an inter-molecular hydrogen bond to the other keto O atom of an adjacent mol-ecule. The latter hydrogen bond leads to the formation of a helical chain running along the b axis.

Entities:  

Year:  2011        PMID: 21522483      PMCID: PMC3051986          DOI: 10.1107/S1600536811006969

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Jang et al. (2005 ▶).

Experimental

Crystal data

C25H31NO4 M = 409.51 Monoclinic, a = 9.7037 (2) Å b = 16.5123 (3) Å c = 13.8847 (3) Å β = 102.132 (3)° V = 2175.06 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.25 × 0.20 × 0.15 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.979, T max = 0.988 19082 measured reflections 4915 independent reflections 3770 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.123 S = 1.03 4915 reflections 279 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811006969/im2270sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006969/im2270Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H31NO4F(000) = 880
Mr = 409.51Dx = 1.251 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6079 reflections
a = 9.7037 (2) Åθ = 2.3–29.4°
b = 16.5123 (3) ŵ = 0.08 mm1
c = 13.8847 (3) ÅT = 100 K
β = 102.132 (3)°Irregular block, light yellow
V = 2175.06 (8) Å30.25 × 0.20 × 0.15 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4915 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3770 reflections with I > 2σ(I)
MirrorRint = 0.042
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.4°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −21→21
Tmin = 0.979, Tmax = 0.988l = −18→18
19082 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0517P)2 + 0.8053P] where P = (Fo2 + 2Fc2)/3
4915 reflections(Δ/σ)max = 0.001
279 parametersΔρmax = 0.27 e Å3
2 restraintsΔρmin = −0.26 e Å3
xyzUiso*/Ueq
O10.48778 (12)0.25598 (7)0.49186 (8)0.0245 (3)
O20.71758 (12)0.26499 (7)0.63474 (8)0.0239 (3)
O30.32877 (12)0.07916 (7)0.64843 (8)0.0252 (3)
O40.36042 (14)0.44954 (8)0.90598 (10)0.0357 (3)
N10.45983 (13)0.28498 (7)0.88782 (9)0.0174 (3)
C10.37807 (16)0.29121 (9)0.52419 (11)0.0198 (3)
C20.28360 (17)0.33708 (10)0.45699 (12)0.0242 (4)
H20.29800.34430.39190.029*
C30.16843 (17)0.37236 (10)0.48466 (12)0.0245 (4)
H30.10300.40300.43820.029*
C40.14843 (17)0.36311 (9)0.57997 (12)0.0232 (4)
H4A0.07010.38780.59930.028*
C50.24353 (16)0.31759 (9)0.64673 (11)0.0201 (3)
H50.22970.31180.71210.024*
C60.35895 (16)0.28008 (9)0.62057 (11)0.0181 (3)
C70.46282 (16)0.22884 (9)0.69374 (11)0.0173 (3)
H70.50660.18840.65570.021*
C80.57885 (16)0.27978 (9)0.75365 (11)0.0182 (3)
C90.70525 (17)0.29325 (9)0.71557 (11)0.0195 (3)
C100.82323 (16)0.34044 (9)0.77743 (12)0.0212 (3)
H10A0.88260.36370.73440.025*
H10B0.88280.30340.82470.025*
C110.76993 (17)0.40884 (9)0.83440 (12)0.0216 (3)
C120.67029 (16)0.37278 (9)0.89612 (11)0.0204 (3)
H12A0.72780.34680.95540.024*
H12B0.61670.41750.91860.024*
C130.56744 (16)0.31146 (9)0.84253 (11)0.0173 (3)
C140.69201 (19)0.47206 (10)0.76251 (13)0.0298 (4)
H14A0.75630.49450.72360.045*
H14B0.65810.51560.79950.045*
H14C0.61170.44650.71840.045*
C150.89404 (18)0.44878 (10)0.90356 (13)0.0273 (4)
H15A0.95750.47260.86490.041*
H15B0.94520.40810.94870.041*
H15C0.85920.49130.94150.041*
C160.43798 (17)0.32332 (9)0.97968 (11)0.0204 (3)
H16A0.52660.35001.01310.025*
H16B0.41540.28081.02430.025*
C170.32055 (19)0.38537 (10)0.96141 (12)0.0266 (4)
H17A0.23230.36020.92490.032*
H17B0.30390.40601.02490.032*
C180.38348 (16)0.21533 (9)0.85240 (11)0.0169 (3)
C190.29342 (16)0.17702 (9)0.91636 (11)0.0195 (3)
H19A0.23810.22000.94050.023*
H19B0.35590.15230.97450.023*
C200.19150 (17)0.11202 (9)0.86392 (11)0.0203 (3)
C210.27110 (18)0.05689 (9)0.80557 (12)0.0236 (4)
H21A0.34880.02920.85140.028*
H21B0.20630.01500.77080.028*
C220.33022 (16)0.10522 (9)0.73201 (11)0.0193 (3)
C230.39203 (16)0.18370 (9)0.76380 (11)0.0179 (3)
C240.13741 (18)0.06237 (10)0.94152 (13)0.0259 (4)
H24A0.08830.09810.97950.039*
H24B0.21720.03650.98590.039*
H24C0.07220.02070.90880.039*
C250.06713 (17)0.15154 (10)0.79316 (12)0.0238 (4)
H25A0.10230.18350.74390.036*
H25B0.01620.18700.83030.036*
H25C0.00330.10940.76000.036*
H10.5572 (17)0.2508 (14)0.5393 (12)0.051 (7)*
H40.2939 (18)0.4842 (11)0.8949 (16)0.053 (7)*
U11U22U33U12U13U23
O10.0232 (6)0.0345 (7)0.0163 (6)−0.0009 (5)0.0056 (5)−0.0008 (5)
O20.0219 (6)0.0323 (6)0.0188 (6)−0.0007 (5)0.0074 (5)−0.0029 (5)
O30.0310 (7)0.0246 (6)0.0225 (6)−0.0054 (5)0.0110 (5)−0.0070 (5)
O40.0373 (8)0.0282 (7)0.0454 (8)0.0109 (6)0.0175 (6)0.0102 (6)
N10.0183 (7)0.0202 (6)0.0141 (6)0.0011 (5)0.0040 (5)−0.0022 (5)
C10.0210 (8)0.0203 (8)0.0181 (7)−0.0056 (6)0.0041 (6)−0.0021 (6)
C20.0262 (9)0.0266 (8)0.0181 (8)−0.0098 (7)0.0009 (7)0.0014 (7)
C30.0218 (8)0.0229 (8)0.0244 (8)−0.0047 (7)−0.0049 (7)0.0027 (7)
C40.0208 (8)0.0212 (8)0.0261 (8)−0.0010 (7)0.0013 (7)−0.0031 (7)
C50.0213 (8)0.0196 (8)0.0190 (8)−0.0039 (6)0.0034 (6)−0.0027 (6)
C60.0191 (8)0.0170 (7)0.0170 (7)−0.0059 (6)0.0007 (6)−0.0024 (6)
C70.0186 (8)0.0193 (7)0.0151 (7)−0.0003 (6)0.0057 (6)−0.0021 (6)
C80.0184 (8)0.0186 (7)0.0174 (7)0.0020 (6)0.0036 (6)0.0015 (6)
C90.0201 (8)0.0203 (8)0.0182 (8)0.0035 (6)0.0039 (6)0.0024 (6)
C100.0187 (8)0.0245 (8)0.0204 (8)−0.0006 (7)0.0044 (6)0.0013 (7)
C110.0209 (8)0.0203 (8)0.0230 (8)−0.0012 (6)0.0029 (7)−0.0004 (7)
C120.0193 (8)0.0219 (8)0.0191 (8)0.0024 (6)0.0020 (6)−0.0032 (6)
C130.0167 (8)0.0174 (7)0.0172 (7)0.0039 (6)0.0024 (6)0.0012 (6)
C140.0313 (10)0.0240 (8)0.0322 (9)0.0013 (7)0.0021 (8)0.0045 (7)
C150.0231 (9)0.0280 (9)0.0305 (9)−0.0042 (7)0.0048 (7)−0.0041 (7)
C160.0243 (8)0.0234 (8)0.0144 (7)0.0007 (7)0.0058 (6)−0.0040 (6)
C170.0338 (10)0.0248 (8)0.0244 (8)0.0055 (7)0.0132 (7)−0.0010 (7)
C180.0154 (7)0.0170 (7)0.0179 (7)0.0033 (6)0.0026 (6)0.0010 (6)
C190.0218 (8)0.0223 (8)0.0152 (7)0.0017 (6)0.0059 (6)−0.0003 (6)
C200.0220 (8)0.0204 (8)0.0201 (8)−0.0011 (6)0.0080 (7)0.0008 (6)
C210.0286 (9)0.0186 (8)0.0257 (8)0.0004 (7)0.0105 (7)−0.0003 (7)
C220.0188 (8)0.0201 (7)0.0196 (7)0.0026 (6)0.0057 (6)−0.0005 (6)
C230.0179 (8)0.0185 (7)0.0176 (7)0.0025 (6)0.0047 (6)0.0004 (6)
C240.0299 (9)0.0240 (8)0.0268 (8)−0.0012 (7)0.0127 (7)0.0031 (7)
C250.0208 (8)0.0281 (8)0.0230 (8)−0.0031 (7)0.0058 (7)0.0000 (7)
O1—C11.3690 (19)C12—C131.504 (2)
O1—H10.841 (10)C12—H12A0.9900
O2—C91.2442 (18)C12—H12B0.9900
O3—C221.2349 (18)C14—H14A0.9800
O4—C171.411 (2)C14—H14B0.9800
O4—H40.852 (9)C14—H14C0.9800
N1—C131.3975 (19)C15—H15A0.9800
N1—C181.400 (2)C15—H15B0.9800
N1—C161.4785 (18)C15—H15C0.9800
C1—C21.388 (2)C16—C171.514 (2)
C1—C61.401 (2)C16—H16A0.9900
C2—C31.384 (2)C16—H16B0.9900
C2—H20.9500C17—H17A0.9900
C3—C41.386 (2)C17—H17B0.9900
C3—H30.9500C18—C231.355 (2)
C4—C51.384 (2)C18—C191.510 (2)
C4—H4A0.9500C19—C201.535 (2)
C5—C61.393 (2)C19—H19A0.9900
C5—H50.9500C19—H19B0.9900
C6—C71.528 (2)C20—C241.532 (2)
C7—C231.502 (2)C20—C211.531 (2)
C7—C81.508 (2)C20—C251.533 (2)
C7—H71.0000C21—C221.502 (2)
C8—C131.366 (2)C21—H21A0.9900
C8—C91.451 (2)C21—H21B0.9900
C9—C101.497 (2)C22—C231.457 (2)
C10—C111.530 (2)C24—H24A0.9800
C10—H10A0.9900C24—H24B0.9800
C10—H10B0.9900C24—H24C0.9800
C11—C151.524 (2)C25—H25A0.9800
C11—C141.530 (2)C25—H25B0.9800
C11—C121.540 (2)C25—H25C0.9800
C1—O1—H1109.6 (16)H14A—C14—H14C109.5
C17—O4—H4108.6 (15)H14B—C14—H14C109.5
C13—N1—C18119.28 (12)C11—C15—H15A109.5
C13—N1—C16120.69 (12)C11—C15—H15B109.5
C18—N1—C16119.57 (12)H15A—C15—H15B109.5
O1—C1—C2117.44 (14)C11—C15—H15C109.5
O1—C1—C6121.71 (14)H15A—C15—H15C109.5
C2—C1—C6120.83 (15)H15B—C15—H15C109.5
C3—C2—C1120.06 (15)N1—C16—C17112.62 (13)
C3—C2—H2120.0N1—C16—H16A109.1
C1—C2—H2120.0C17—C16—H16A109.1
C2—C3—C4120.13 (16)N1—C16—H16B109.1
C2—C3—H3119.9C17—C16—H16B109.1
C4—C3—H3119.9H16A—C16—H16B107.8
C5—C4—C3119.46 (15)O4—C17—C16108.47 (13)
C5—C4—H4A120.3O4—C17—H17A110.0
C3—C4—H4A120.3C16—C17—H17A110.0
C4—C5—C6121.74 (15)O4—C17—H17B110.0
C4—C5—H5119.1C16—C17—H17B110.0
C6—C5—H5119.1H17A—C17—H17B108.4
C5—C6—C1117.76 (14)C23—C18—N1120.45 (13)
C5—C6—C7121.80 (13)C23—C18—C19121.74 (14)
C1—C6—C7120.43 (14)N1—C18—C19117.81 (12)
C23—C7—C8108.04 (12)C18—C19—C20114.13 (12)
C23—C7—C6112.22 (12)C18—C19—H19A108.7
C8—C7—C6111.70 (12)C20—C19—H19A108.7
C23—C7—H7108.2C18—C19—H19B108.7
C8—C7—H7108.3C20—C19—H19B108.7
C6—C7—H7108.2H19A—C19—H19B107.6
C13—C8—C9120.37 (14)C24—C20—C21109.84 (13)
C13—C8—C7121.27 (13)C24—C20—C25109.79 (13)
C9—C8—C7118.35 (13)C21—C20—C25109.31 (13)
O2—C9—C8121.33 (14)C24—C20—C19108.81 (13)
O2—C9—C10120.38 (14)C21—C20—C19108.68 (13)
C8—C9—C10118.27 (13)C25—C20—C19110.39 (13)
C9—C10—C11112.33 (13)C22—C21—C20110.56 (13)
C9—C10—H10A109.1C22—C21—H21A109.5
C11—C10—H10A109.1C20—C21—H21A109.5
C9—C10—H10B109.1C22—C21—H21B109.5
C11—C10—H10B109.1C20—C21—H21B109.5
H10A—C10—H10B107.9H21A—C21—H21B108.1
C15—C11—C14109.44 (14)O3—C22—C23121.15 (14)
C15—C11—C10109.70 (13)O3—C22—C21121.56 (14)
C14—C11—C10109.92 (13)C23—C22—C21117.28 (13)
C15—C11—C12108.79 (13)C18—C23—C22121.21 (13)
C14—C11—C12110.17 (13)C18—C23—C7121.36 (14)
C10—C11—C12108.80 (12)C22—C23—C7117.42 (13)
C13—C12—C11114.45 (12)C20—C24—H24A109.5
C13—C12—H12A108.6C20—C24—H24B109.5
C11—C12—H12A108.6H24A—C24—H24B109.5
C13—C12—H12B108.6C20—C24—H24C109.5
C11—C12—H12B108.6H24A—C24—H24C109.5
H12A—C12—H12B107.6H24B—C24—H24C109.5
C8—C13—N1119.79 (14)C20—C25—H25A109.5
C8—C13—C12122.23 (13)C20—C25—H25B109.5
N1—C13—C12117.95 (13)H25A—C25—H25B109.5
C11—C14—H14A109.5C20—C25—H25C109.5
C11—C14—H14B109.5H25A—C25—H25C109.5
H14A—C14—H14B109.5H25B—C25—H25C109.5
C11—C14—H14C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.84 (1)1.84 (1)2.659 (2)166 (2)
O4—H4···O3i0.85 (1)1.98 (1)2.818 (2)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O20.84 (1)1.84 (1)2.659 (2)166 (2)
O4—H4⋯O3i0.85 (1)1.98 (1)2.818 (2)166 (2)

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  12 in total

1.  Crystal structure of 10-benzyl-9-(3,4-di-meth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,6,7,9,10-hexa-hydro-acridine-1,8(2H,5H)-dione.

Authors:  N Sureshbabu; V Sughanya
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-26

2.  Crystal structure and Hirshfeld surface analysis of ethyl 2-[9-(2-hy-droxy-phen-yl)-3,3,6,6-tetra-methyl-1,8-dioxo-2,3,4,4a,5,6,7,8a,9,9a,10,10a-dodeca-hydro-acridin-10-yl]acetate.

Authors:  Omyma A A Abd Allah; Manpreet Kaur; Mehmet Akkurt; Shaaban K Mohamed; Jerry P Jasinski; Sahar M I Elgarhy
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-12

3.  9-(5-Bromo-2-hy-droxy-phen-yl)-10-(2-hy-droxy-prop-yl)-3,3,6,6-tetra-methyl-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Authors:  Ali N Khalilov; Antar A Abdelhamid; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

4.  Crystal structure and Hirshfeld surface analysis of 5-(5-phenyl-1,2-oxazol-3-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Evgeniya V Nikitina; Sevim Türktekin Çelikesir; Mehmet Akkurt; Sergey K Petkevich; Ekaterina A Akishina; Victor N Khrustalev; Sixberth Mlowe
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-03-31

5.  Crystal structure and Hirshfeld surface analysis of 2-amino-4-(4-meth-oxy-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile.

Authors:  Khammed A Asadov; Victor N Khrustalev; Ekaterina V Dobrokhotova; Mehmet Akkurt; Afet T Huseynova; Anzurat A Akobirshoeva; Elnur Z Huseynov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-02-22

6.  Crystal structure and Hirshfeld surface analysis of 5-acetyl-2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile.

Authors:  Ibrahim G Mamedov; Victor N Khrustalev; Mehmet Akkurt; Anton P Novikov; Ayten R Asgarova; Khatira N Aliyeva; Anzurat A Akobirshoeva
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-02-03

7.  10-Benzyl-9-(4-eth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,6,7,9,10-hexa-hydro-acridine-1,8(2H,5H)-dione.

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

8.  9-(3-Bromo-5-chloro-2-hy-droxy-phen-yl)-10-(2-hy-droxy-eth-yl)-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Peter N Horton; Antar A Abdelhamid; Mahmoud A A El Remaily
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-15

9.  Crystal structure of 9-(3-bromo-5-chloro-2-hydroxy-phen-yl)-10-(2-hy-droxy-eth-yl)-3,3,6,6-tetra-methyl-3,4,6,7,9,10-hexa-hydro-acridine-1,8(2H,5H)-dione.

Authors:  Antar A Abdelhamid; Shaaban K Mohamed; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-19

10.  The structure of 9-(3-bromo-6-chloro-2-hy-droxy-phen-yl)-10-(2-hy-droxy-ethyl)-3,6-diphenyl-3,4,5,6,7,9-hexa-hydro-2H-acridine-1,8-dione.

Authors:  Antar A Abdelhamid; Farouq E Hawaiz; Alaa F Mohamed; Shaaban K Mohamed; Jim Simpson
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-14
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