Literature DB >> 23476467

9-(3-Bromo-5-chloro-2-hy-droxy-phen-yl)-10-(2-hy-droxy-eth-yl)-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Shaaban K Mohamed1, Mehmet Akkurt, Peter N Horton, Antar A Abdelhamid, Mahmoud A A El Remaily.   

Abstract

In the title compound, C21H21BrClNO4, the dihydro-pyridine ring adopts a flattened boat conformation. The 3-bromo-5-chloro-2-hy-droxy-phenyl ring forms a dihedral angles of 84.44 (7)° with the dihydro-pyridine mean plane. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯O hydrogen bond, with an S(8) ring motif. In the crystal, O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476467      PMCID: PMC3588342          DOI: 10.1107/S1600536812050222

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and bioactivity of acridines, see, for example: Karolak-Wojciechowska et al. (1996 ▶). For related structures, see: Abdelhamid et al. (2011a ▶,b ▶); Mohamed et al. (2012 ▶); Guo et al. (2004 ▶); Sughanya & Sureshbabu (2012 ▶); Yogavel et al. (2005 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H21BrClNO4 M = 466.74 Monoclinic, a = 8.810 (2) Å b = 13.809 (3) Å c = 15.797 (4) Å β = 100.026 (4)° V = 1892.5 (8) Å3 Z = 4 Mo Kα radiation μ = 2.34 mm−1 T = 100 K 0.22 × 0.14 × 0.03 mm

Data collection

Rigaku AFC12 (Right) diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▶) T min = 0.627, T max = 0.933 14959 measured reflections 4299 independent reflections 4126 reflections with I > 2σ(i) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.077 S = 1.03 4299 reflections 255 parameters H-atom parameters constrained Δρmax = 0.86 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2012 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812050222/hg5278sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050222/hg5278Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050222/hg5278Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21BrClNO4F(000) = 952
Mr = 466.74Dx = 1.638 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ynCell parameters from 4812 reflections
a = 8.810 (2) Åθ = 2.5–27.5°
b = 13.809 (3) ŵ = 2.34 mm1
c = 15.797 (4) ÅT = 100 K
β = 100.026 (4)°Plate, yellow
V = 1892.5 (8) Å30.22 × 0.14 × 0.03 mm
Z = 4
Rigaku AFC12 (Right) diffractometer4299 independent reflections
Radiation source: Rotating Anode4126 reflections with I > 2σ(i)
Detector resolution: 28.5714 pixels mm-1Rint = 0.024
profile data from ω–scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012)h = −10→11
Tmin = 0.627, Tmax = 0.933k = −17→14
14959 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0485P)2 + 1.1263P] where P = (Fo2 + 2Fc2)/3
4299 reflections(Δ/σ)max = 0.003
255 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. Rigaku CrystalClear-SM Expert 3.1 b5
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.02039 (2)1.02608 (1)0.11100 (1)0.0178 (1)
Cl20.89028 (5)1.13026 (3)0.42922 (3)0.0206 (1)
O10.85205 (14)0.84648 (9)0.14843 (8)0.0171 (3)
O20.91879 (13)0.68133 (9)0.23546 (7)0.0155 (3)
O30.44222 (13)0.87300 (9)0.18903 (8)0.0175 (3)
O40.69992 (16)0.85677 (12)0.68490 (9)0.0294 (4)
N10.65599 (15)0.75304 (10)0.46456 (8)0.0125 (4)
C10.69843 (17)0.79777 (11)0.29224 (10)0.0113 (4)
C20.79574 (17)0.72563 (11)0.34966 (10)0.0114 (4)
C30.90436 (17)0.66869 (11)0.31212 (10)0.0124 (4)
C40.99634 (19)0.59201 (12)0.36547 (11)0.0169 (4)
C51.03428 (19)0.62450 (13)0.45893 (11)0.0165 (4)
C60.88912 (18)0.65080 (12)0.49409 (11)0.0152 (4)
C70.77954 (17)0.71276 (11)0.43370 (10)0.0121 (4)
C80.54946 (17)0.81352 (11)0.32480 (10)0.0114 (4)
C90.42314 (18)0.85498 (12)0.26225 (10)0.0134 (4)
C100.27404 (19)0.87759 (14)0.29195 (11)0.0202 (5)
C110.24551 (19)0.80920 (14)0.36209 (11)0.0203 (5)
C120.38110 (18)0.80674 (14)0.43714 (11)0.0165 (4)
C130.53272 (17)0.79239 (11)0.40620 (10)0.0122 (4)
C140.78575 (17)0.89267 (11)0.28563 (10)0.0113 (4)
C150.85590 (17)0.91091 (12)0.21354 (10)0.0128 (4)
C160.93144 (18)0.99934 (13)0.20933 (10)0.0135 (4)
C170.94463 (17)1.06742 (12)0.27456 (11)0.0143 (4)
C180.87751 (19)1.04633 (12)0.34544 (11)0.0146 (4)
C190.79829 (18)0.96063 (12)0.35129 (10)0.0131 (4)
C200.65018 (19)0.75423 (14)0.55771 (10)0.0168 (4)
C210.6898 (2)0.85513 (15)0.59499 (12)0.0242 (5)
H10.673200.769100.233300.0140*
H1A0.851000.789900.167900.0260*
H40.613100.844300.697400.0440*
H4A1.093000.579700.343300.0200*
H4B0.936600.531000.361500.0200*
H5A1.103500.681400.463400.0200*
H5B1.089300.571800.494100.0200*
H6A0.835700.590500.505900.0180*
H6B0.919000.685700.549200.0180*
H10A0.188000.872600.242700.0240*
H10B0.277100.944900.313700.0240*
H11A0.227500.743200.338000.0240*
H11B0.151400.829700.383500.0240*
H12A0.384500.868300.469600.0200*
H12B0.365800.753300.476600.0200*
H170.998001.126600.270800.0170*
H190.752400.948300.400400.0160*
H20A0.724300.706400.587800.0200*
H20B0.545700.735700.566800.0200*
H21A0.789400.876200.580300.0290*
H21B0.609700.901500.568600.0290*
U11U22U33U12U13U23
Br10.0204 (1)0.0193 (1)0.0158 (1)0.0017 (1)0.0089 (1)0.0053 (1)
Cl20.0244 (2)0.0190 (2)0.0201 (2)−0.0061 (2)0.0086 (2)−0.0083 (2)
O10.0224 (6)0.0168 (6)0.0136 (5)−0.0002 (5)0.0072 (5)−0.0009 (5)
O20.0148 (5)0.0180 (6)0.0145 (5)0.0010 (4)0.0048 (4)−0.0014 (5)
O30.0163 (6)0.0228 (6)0.0126 (5)0.0012 (5)0.0006 (4)0.0024 (5)
O40.0222 (7)0.0506 (9)0.0163 (6)−0.0094 (6)0.0056 (5)−0.0090 (6)
N10.0129 (6)0.0163 (7)0.0084 (6)0.0000 (5)0.0021 (5)−0.0004 (5)
C10.0106 (7)0.0136 (7)0.0096 (7)0.0000 (5)0.0016 (5)−0.0002 (6)
C20.0101 (7)0.0114 (7)0.0123 (7)−0.0003 (5)0.0011 (5)−0.0008 (6)
C30.0107 (7)0.0114 (7)0.0150 (7)−0.0021 (5)0.0020 (5)−0.0024 (6)
C40.0164 (7)0.0155 (8)0.0192 (8)0.0035 (6)0.0045 (6)0.0019 (7)
C50.0138 (7)0.0182 (8)0.0168 (8)0.0026 (6)0.0005 (6)0.0028 (6)
C60.0154 (7)0.0158 (8)0.0142 (7)0.0012 (6)0.0020 (6)0.0026 (6)
C70.0106 (7)0.0116 (7)0.0137 (7)−0.0021 (5)0.0013 (5)−0.0012 (6)
C80.0108 (7)0.0117 (7)0.0116 (7)−0.0006 (5)0.0020 (5)−0.0017 (6)
C90.0126 (7)0.0134 (7)0.0136 (7)−0.0010 (6)0.0009 (6)−0.0012 (6)
C100.0130 (7)0.0288 (9)0.0183 (8)0.0048 (7)0.0017 (6)0.0013 (7)
C110.0134 (7)0.0293 (9)0.0182 (8)−0.0011 (7)0.0027 (6)−0.0009 (7)
C120.0116 (7)0.0262 (9)0.0127 (7)−0.0004 (6)0.0047 (6)−0.0018 (7)
C130.0110 (7)0.0120 (7)0.0132 (7)−0.0010 (5)0.0011 (6)−0.0020 (6)
C140.0085 (6)0.0134 (7)0.0115 (7)0.0013 (5)0.0005 (5)0.0018 (6)
C150.0105 (7)0.0166 (8)0.0110 (7)0.0027 (6)0.0012 (5)−0.0001 (6)
C160.0114 (7)0.0170 (7)0.0126 (7)0.0031 (6)0.0038 (6)0.0059 (6)
C170.0109 (7)0.0141 (7)0.0176 (8)0.0011 (6)0.0015 (6)0.0025 (6)
C180.0138 (7)0.0155 (7)0.0142 (7)0.0012 (6)0.0015 (6)−0.0029 (6)
C190.0114 (7)0.0168 (8)0.0114 (7)0.0007 (6)0.0029 (6)0.0008 (6)
C200.0149 (7)0.0271 (9)0.0083 (7)0.0013 (6)0.0018 (6)0.0002 (6)
C210.0209 (9)0.0358 (11)0.0163 (8)−0.0070 (7)0.0044 (7)−0.0073 (8)
Br1—C161.8939 (17)C14—C191.389 (2)
Cl2—C181.7480 (18)C14—C151.410 (2)
O1—C151.356 (2)C15—C161.398 (2)
O2—C31.2517 (19)C16—C171.385 (2)
O3—C91.223 (2)C17—C181.385 (2)
O4—C211.408 (2)C18—C191.385 (2)
O1—H1A0.8400C20—C211.529 (3)
O4—H40.8400C1—H11.0000
N1—C201.481 (2)C4—H4A0.9900
N1—C71.384 (2)C4—H4B0.9900
N1—C131.406 (2)C5—H5A0.9900
C1—C141.532 (2)C5—H5B0.9900
C1—C21.510 (2)C6—H6A0.9900
C1—C81.506 (2)C6—H6B0.9900
C2—C31.443 (2)C10—H10A0.9900
C2—C71.371 (2)C10—H10B0.9900
C3—C41.500 (2)C11—H11A0.9900
C4—C51.524 (2)C11—H11B0.9900
C5—C61.524 (2)C12—H12A0.9900
C6—C71.501 (2)C12—H12B0.9900
C8—C131.351 (2)C17—H170.9500
C8—C91.470 (2)C19—H190.9500
C9—C101.503 (2)C20—H20A0.9900
C10—C111.510 (3)C20—H20B0.9900
C11—C121.530 (2)C21—H21A0.9900
C12—C131.513 (2)C21—H21B0.9900
C15—O1—H1A109.00C2—C1—H1108.00
C21—O4—H4109.00C8—C1—H1108.00
C13—N1—C20119.40 (13)C14—C1—H1108.00
C7—N1—C20121.30 (13)C3—C4—H4A110.00
C7—N1—C13119.30 (13)C3—C4—H4B110.00
C2—C1—C14111.47 (13)C5—C4—H4A110.00
C2—C1—C8109.12 (13)C5—C4—H4B110.00
C8—C1—C14112.17 (13)H4A—C4—H4B108.00
C1—C2—C7121.55 (14)C4—C5—H5A109.00
C1—C2—C3117.41 (13)C4—C5—H5B109.00
C3—C2—C7121.02 (14)C6—C5—H5A109.00
O2—C3—C4120.40 (14)C6—C5—H5B109.00
C2—C3—C4119.06 (14)H5A—C5—H5B108.00
O2—C3—C2120.52 (14)C5—C6—H6A109.00
C3—C4—C5110.03 (14)C5—C6—H6B109.00
C4—C5—C6111.52 (14)C7—C6—H6A109.00
C5—C6—C7113.07 (14)C7—C6—H6B109.00
C2—C7—C6121.69 (14)H6A—C6—H6B108.00
N1—C7—C6117.60 (13)C9—C10—H10A109.00
N1—C7—C2120.64 (14)C9—C10—H10B109.00
C1—C8—C13122.65 (14)C11—C10—H10A109.00
C9—C8—C13121.91 (14)C11—C10—H10B109.00
C1—C8—C9115.43 (13)H10A—C10—H10B108.00
C8—C9—C10118.16 (14)C10—C11—H11A109.00
O3—C9—C8120.16 (15)C10—C11—H11B109.00
O3—C9—C10121.64 (15)C12—C11—H11A109.00
C9—C10—C11111.44 (15)C12—C11—H11B109.00
C10—C11—C12112.04 (14)H11A—C11—H11B108.00
C11—C12—C13111.51 (14)C11—C12—H12A109.00
N1—C13—C8120.51 (14)C11—C12—H12B109.00
N1—C13—C12117.61 (13)C13—C12—H12A109.00
C8—C13—C12121.85 (14)C13—C12—H12B109.00
C1—C14—C15120.25 (14)H12A—C12—H12B108.00
C15—C14—C19119.57 (14)C16—C17—H17121.00
C1—C14—C19120.17 (14)C18—C17—H17121.00
O1—C15—C16119.10 (14)C14—C19—H19120.00
C14—C15—C16118.28 (14)C18—C19—H19120.00
O1—C15—C14122.61 (14)N1—C20—H20A110.00
C15—C16—C17122.46 (15)N1—C20—H20B110.00
Br1—C16—C15118.54 (12)C21—C20—H20A110.00
Br1—C16—C17119.00 (13)C21—C20—H20B110.00
C16—C17—C18117.80 (15)H20A—C20—H20B108.00
Cl2—C18—C19118.86 (13)O4—C21—H21A109.00
C17—C18—C19121.64 (15)O4—C21—H21B109.00
Cl2—C18—C17119.50 (13)C20—C21—H21A109.00
C14—C19—C18120.20 (15)C20—C21—H21B109.00
N1—C20—C21110.34 (14)H21A—C21—H21B108.00
O4—C21—C20111.92 (16)
C7—N1—C13—C12161.29 (14)C5—C6—C7—C212.9 (2)
C7—N1—C20—C21103.01 (17)C5—C6—C7—N1−170.23 (14)
C13—N1—C20—C21−77.86 (18)C1—C8—C13—C12−178.67 (15)
C7—N1—C13—C8−16.8 (2)C9—C8—C13—N1−179.81 (14)
C13—N1—C7—C211.4 (2)C1—C8—C9—O31.0 (2)
C20—N1—C7—C2−169.52 (15)C1—C8—C9—C10−176.73 (14)
C20—N1—C13—C12−17.9 (2)C13—C8—C9—O3−179.82 (15)
C20—N1—C13—C8164.11 (15)C9—C8—C13—C122.2 (2)
C20—N1—C7—C613.6 (2)C13—C8—C9—C102.4 (2)
C13—N1—C7—C6−165.53 (14)C1—C8—C13—N1−0.7 (2)
C14—C1—C2—C798.95 (17)O3—C9—C10—C11151.65 (16)
C8—C1—C14—C15−137.57 (15)C8—C9—C10—C11−30.6 (2)
C2—C1—C8—C1320.3 (2)C9—C10—C11—C1254.0 (2)
C14—C1—C8—C975.41 (17)C10—C11—C12—C13−49.4 (2)
C2—C1—C8—C9−160.57 (13)C11—C12—C13—N1−156.62 (15)
C2—C1—C14—C1599.74 (17)C11—C12—C13—C821.4 (2)
C2—C1—C14—C19−79.27 (18)C1—C14—C15—O1−1.0 (2)
C8—C1—C14—C1943.4 (2)C19—C14—C15—C16−2.4 (2)
C8—C1—C2—C7−25.5 (2)C1—C14—C19—C18179.85 (15)
C14—C1—C2—C3−82.55 (17)C15—C14—C19—C180.8 (2)
C14—C1—C8—C13−103.74 (17)C1—C14—C15—C16178.62 (14)
C8—C1—C2—C3153.02 (13)C19—C14—C15—O1177.99 (15)
C1—C2—C7—C6−172.02 (14)C14—C15—C16—Br1−178.05 (12)
C1—C2—C3—O21.8 (2)O1—C15—C16—Br11.6 (2)
C7—C2—C3—C42.2 (2)O1—C15—C16—C17−177.82 (15)
C1—C2—C7—N111.2 (2)C14—C15—C16—C172.5 (2)
C7—C2—C3—O2−179.65 (15)C15—C16—C17—C18−1.1 (2)
C3—C2—C7—C69.5 (2)Br1—C16—C17—C18179.52 (12)
C1—C2—C3—C4−176.32 (14)C16—C17—C18—Cl2−179.70 (13)
C3—C2—C7—N1−167.22 (14)C16—C17—C18—C19−0.6 (2)
C2—C3—C4—C5−34.7 (2)C17—C18—C19—C140.7 (3)
O2—C3—C4—C5147.20 (15)Cl2—C18—C19—C14179.80 (12)
C3—C4—C5—C655.54 (18)N1—C20—C21—O4−174.31 (14)
C4—C5—C6—C7−45.49 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O20.841.882.6749 (19)158
O4—H4···O2i0.841.942.782 (2)176
C1—H1···O11.002.482.918 (2)106
C6—H6B···O3ii0.992.333.051 (2)129
C20—H20A···O3ii0.992.533.486 (2)163
C20—H20B···O1i0.992.573.492 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯O20.841.882.6749 (19)158
O4—H4⋯O2i 0.841.942.782 (2)176
C6—H6B⋯O3ii 0.992.333.051 (2)129
C20—H20A⋯O3ii 0.992.533.486 (2)163
C20—H20B⋯O1i 0.992.573.492 (2)154

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  10-(2-Hy-droxy-eth-yl)-9-(2-hy-droxy-phen-yl)-3,3,6,6-tetra-methyl-1,2,3,4,5,6,7,8,9,10-deca-hydro-acridine-1,8-dione.

Authors:  Antar A Abdelhamid; Shaaban K Mohamed; Ali N Khalilov; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-26

3.  3,3,6,6-Tetra-methyl-9-[6-(3,3,6,6-tetra-methyl-1,8-dioxo-2,3,4,5,6,7,8,9-octa-hydro-1H-xanthen-9-yl)pyridin-2-yl]-2,3,4,5,6,7,8,9-octa-hydro-1H-xanthene-1,8-dione.

Authors:  Antar A Abdelhamid; Shaaban Kamel Mohamed; Mirze A Allahverdiyev; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

4.  10-Benzyl-9-(4-eth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,6,7,9,10-hexa-hydro-acridine-1,8(2H,5H)-dione.

Authors:  V Sughanya; N Sureshbabu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  Crystal structure, Hirshfeld surface and frontier mol-ecular orbital analysis of 10-benzyl-9-(4-hydroxy-3-meth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,6,7,9,10-hexa-hydro-acridine-1,8(2H,5H)-dione.

Authors:  V Sughanya; B Loganathan; D Praveenkumar; J Ayyappan; M L Sundararajan; A Prabhakaran; A Dhandapani; N Suresh Babu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-07-14

2.  9-(3-Bromo-5-chloro-2-hy-droxy-phen-yl)-10-(2-hy-droxy-eth-yl)-3,6-diphenyl-3,4,9,10-tetra-hydro-acridine-1,8(2H,5H)-dione.

Authors:  Mehmet Akkurt; Shaaban K Mohamed; Antar A Abdelhamid; Abdel-Aal M Gaber; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17

3.  The structure of 9-(3-bromo-6-chloro-2-hy-droxy-phen-yl)-10-(2-hy-droxy-ethyl)-3,6-diphenyl-3,4,5,6,7,9-hexa-hydro-2H-acridine-1,8-dione.

Authors:  Antar A Abdelhamid; Farouq E Hawaiz; Alaa F Mohamed; Shaaban K Mohamed; Jim Simpson
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-14
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.