| Literature DB >> 21522236 |
Shi-Jie Li, Xiao-Tian Ma, Wen-Dong Song, Xiao-Fei Li, Juan-Hua Liu.
Abstract
In the title complex, {[Na(C(7)H(7)N(2)O(4))(H(2)O)(2)]·H(2)O}(n), the Na(I) atom exhibits a distorted octa-hedral geometry and is six-coordinated in an NO(5) environment. The equatorial plane is defined by three O atoms and one N atom from two distinct 5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ate (H(2)EIDC) ligands and one coordinated water mol-ecule, and the apical sites are occupied by one carboxyl O atom from one H(2)EIDC ligand and one O atom from the other coordinated water mol-ecule. The Na(I) atoms are linked by H(2)EIDC ligands, generating an infinite double chain along the a axis. These chains are further connected via O-H⋯O and N-H⋯O hydrogen bonds into a three-dimensional supra-molecular network.Entities:
Year: 2011 PMID: 21522236 PMCID: PMC3051994 DOI: 10.1107/S1600536811002741
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Na(C7H7N2O4)(H2O)2]·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1702 reflections |
| θ = 2.5–25.9° | |
| µ = 0.17 mm−1 | |
| β = 98.880 (1)° | Block, colorless |
| 0.49 × 0.48 × 0.34 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 1991 independent reflections |
| Radiation source: fine-focus sealed tube | 1549 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 5410 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1991 reflections | Δρmax = 0.33 e Å−3 |
| 162 parameters | Δρmin = −0.27 e Å−3 |
| 9 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.116 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Na1 | 0.93820 (11) | 0.32398 (16) | 0.56175 (5) | 0.0388 (4) | |
| N1 | 0.3469 (2) | 0.7014 (3) | 0.42293 (10) | 0.0288 (5) | |
| N2 | 0.5987 (2) | 0.6488 (3) | 0.41437 (10) | 0.0283 (5) | |
| H2 | 0.6816 | 0.6165 | 0.3966 | 0.034* | |
| O1 | 0.2192 (2) | 0.8220 (3) | 0.54163 (10) | 0.0413 (5) | |
| O2 | 0.4583 (2) | 0.8601 (3) | 0.60539 (9) | 0.0361 (5) | |
| O3 | 0.7371 (2) | 0.8029 (3) | 0.59418 (9) | 0.0361 (5) | |
| H3 | 0.6453 | 0.8360 | 0.5953 | 0.054* | |
| O4 | 0.8713 (2) | 0.6644 (3) | 0.51722 (9) | 0.0374 (5) | |
| O1W | 1.1322 (2) | 0.5012 (3) | 0.63961 (10) | 0.0413 (5) | |
| H1W | 1.132 (4) | 0.608 (2) | 0.6204 (13) | 0.062* | |
| H2W | 1.152 (4) | 0.509 (4) | 0.6843 (6) | 0.062* | |
| O2W | 1.0214 (2) | 0.0314 (3) | 0.61812 (10) | 0.0444 (6) | |
| H3W | 1.0861 | −0.0263 | 0.5958 | 0.067* | |
| H4W | 0.9347 | −0.0303 | 0.6128 | 0.067* | |
| O3W | 0.3117 (3) | 0.0343 (4) | 0.71733 (11) | 0.0803 (9) | |
| H5W | 0.3704 | −0.0161 | 0.6902 | 0.120* | |
| H6W | 0.2135 | 0.0274 | 0.7005 | 0.120* | |
| C1 | 0.3656 (3) | 0.8138 (4) | 0.54743 (13) | 0.0292 (6) | |
| C2 | 0.4401 (3) | 0.7466 (3) | 0.48677 (12) | 0.0256 (6) | |
| C3 | 0.5973 (3) | 0.7131 (3) | 0.48215 (12) | 0.0255 (6) | |
| C4 | 0.7464 (3) | 0.7262 (4) | 0.53360 (13) | 0.0277 (6) | |
| C5 | 0.4475 (3) | 0.6448 (4) | 0.38032 (13) | 0.0280 (6) | |
| C6 | 0.4053 (3) | 0.5841 (5) | 0.30430 (13) | 0.0391 (7) | |
| H6A | 0.4522 | 0.4610 | 0.2986 | 0.047* | |
| H6B | 0.4512 | 0.6731 | 0.2744 | 0.047* | |
| C7 | 0.2284 (3) | 0.5722 (5) | 0.27913 (15) | 0.0472 (8) | |
| H7A | 0.1832 | 0.4770 | 0.3059 | 0.071* | |
| H7B | 0.2094 | 0.5397 | 0.2296 | 0.071* | |
| H7C | 0.1804 | 0.6925 | 0.2859 | 0.071* |
| Na1 | 0.0261 (6) | 0.0525 (8) | 0.0381 (6) | 0.0021 (5) | 0.0057 (4) | −0.0010 (5) |
| N1 | 0.0239 (11) | 0.0336 (12) | 0.0288 (11) | 0.0004 (9) | 0.0038 (9) | 0.0000 (9) |
| N2 | 0.0228 (11) | 0.0363 (13) | 0.0270 (11) | 0.0012 (9) | 0.0083 (8) | −0.0012 (9) |
| O1 | 0.0241 (10) | 0.0583 (13) | 0.0433 (11) | 0.0016 (9) | 0.0107 (8) | −0.0118 (10) |
| O2 | 0.0295 (10) | 0.0503 (12) | 0.0289 (10) | 0.0009 (8) | 0.0057 (7) | −0.0098 (8) |
| O3 | 0.0243 (9) | 0.0520 (13) | 0.0319 (10) | 0.0009 (8) | 0.0033 (7) | −0.0077 (9) |
| O4 | 0.0229 (10) | 0.0517 (13) | 0.0379 (10) | 0.0049 (8) | 0.0061 (8) | −0.0022 (9) |
| O1W | 0.0422 (11) | 0.0494 (13) | 0.0332 (10) | 0.0032 (10) | 0.0086 (9) | −0.0007 (9) |
| O2W | 0.0342 (10) | 0.0526 (13) | 0.0464 (12) | 0.0014 (9) | 0.0062 (8) | −0.0099 (10) |
| O3W | 0.0568 (15) | 0.148 (3) | 0.0359 (12) | 0.0132 (16) | 0.0053 (10) | −0.0115 (15) |
| C1 | 0.0279 (14) | 0.0297 (14) | 0.0312 (14) | −0.0002 (11) | 0.0082 (11) | 0.0000 (11) |
| C2 | 0.0246 (12) | 0.0257 (13) | 0.0272 (12) | −0.0007 (10) | 0.0056 (10) | 0.0015 (10) |
| C3 | 0.0257 (13) | 0.0260 (13) | 0.0255 (12) | −0.0001 (10) | 0.0060 (10) | 0.0000 (10) |
| C4 | 0.0255 (13) | 0.0291 (14) | 0.0293 (13) | −0.0002 (11) | 0.0062 (10) | 0.0011 (11) |
| C5 | 0.0266 (13) | 0.0307 (14) | 0.0272 (13) | 0.0003 (10) | 0.0054 (10) | 0.0006 (11) |
| C6 | 0.0391 (16) | 0.0506 (19) | 0.0275 (14) | −0.0012 (13) | 0.0048 (11) | −0.0024 (13) |
| C7 | 0.0446 (17) | 0.058 (2) | 0.0351 (15) | −0.0049 (15) | −0.0052 (12) | 0.0008 (14) |
| Na1—O4i | 2.378 (2) | O4—Na1i | 2.378 (2) |
| Na1—O2W | 2.384 (2) | O1W—H1W | 0.840 (11) |
| Na1—O1W | 2.396 (2) | O1W—H2W | 0.843 (11) |
| Na1—O1ii | 2.433 (2) | O2W—H3W | 0.8500 |
| Na1—N1ii | 2.498 (2) | O2W—H4W | 0.8500 |
| Na1—O4 | 2.583 (2) | O3W—H5W | 0.8500 |
| N1—C5 | 1.329 (3) | O3W—H6W | 0.8499 |
| N1—C2 | 1.383 (3) | C1—C2 | 1.480 (3) |
| N1—Na1ii | 2.498 (2) | C2—C3 | 1.377 (3) |
| N2—C5 | 1.351 (3) | C3—C4 | 1.482 (3) |
| N2—C3 | 1.369 (3) | C5—C6 | 1.499 (3) |
| N2—H2 | 0.8600 | C6—C7 | 1.512 (4) |
| O1—C1 | 1.237 (3) | C6—H6A | 0.9700 |
| O1—Na1ii | 2.432 (2) | C6—H6B | 0.9700 |
| O2—C1 | 1.296 (3) | C7—H7A | 0.9600 |
| O3—C4 | 1.287 (3) | C7—H7B | 0.9600 |
| O3—H3 | 0.8200 | C7—H7C | 0.9600 |
| O4—C4 | 1.234 (3) | ||
| O4i—Na1—O2W | 97.45 (7) | Na1—O1W—H2W | 132 (2) |
| O4i—Na1—O1W | 84.24 (7) | H1W—O1W—H2W | 111.4 (15) |
| O2W—Na1—O1W | 92.58 (7) | Na1—O2W—H3W | 111.2 |
| O4i—Na1—O1ii | 81.27 (7) | Na1—O2W—H4W | 101.4 |
| O2W—Na1—O1ii | 94.91 (8) | H3W—O2W—H4W | 108.2 |
| O1W—Na1—O1ii | 164.44 (8) | H5W—O3W—H6W | 112.6 |
| O4i—Na1—N1ii | 147.95 (8) | O1—C1—O2 | 122.6 (2) |
| O2W—Na1—N1ii | 96.45 (8) | O1—C1—C2 | 119.6 (2) |
| O1W—Na1—N1ii | 123.79 (8) | O2—C1—C2 | 117.8 (2) |
| O1ii—Na1—N1ii | 68.86 (7) | C3—C2—N1 | 109.7 (2) |
| O4i—Na1—O4 | 84.16 (7) | C3—C2—C1 | 130.1 (2) |
| O2W—Na1—O4 | 171.50 (8) | N1—C2—C1 | 120.1 (2) |
| O1W—Na1—O4 | 79.24 (7) | N2—C3—C2 | 105.48 (19) |
| O1ii—Na1—O4 | 93.59 (7) | N2—C3—C4 | 120.8 (2) |
| N1ii—Na1—O4 | 86.31 (7) | C2—C3—C4 | 133.7 (2) |
| O4i—Na1—Na1i | 44.22 (5) | O4—C4—O3 | 123.3 (2) |
| O2W—Na1—Na1i | 140.98 (7) | O4—C4—C3 | 119.7 (2) |
| O1W—Na1—Na1i | 78.72 (6) | O3—C4—C3 | 116.9 (2) |
| O1ii—Na1—Na1i | 86.90 (6) | N1—C5—N2 | 111.0 (2) |
| N1ii—Na1—Na1i | 120.13 (7) | N1—C5—C6 | 126.4 (2) |
| O4—Na1—Na1i | 39.94 (4) | N2—C5—C6 | 122.6 (2) |
| C5—N1—C2 | 105.55 (19) | C5—C6—C7 | 113.6 (2) |
| C5—N1—Na1ii | 141.28 (17) | C5—C6—H6A | 108.8 |
| C2—N1—Na1ii | 110.58 (15) | C7—C6—H6A | 108.8 |
| C5—N2—C3 | 108.2 (2) | C5—C6—H6B | 108.8 |
| C5—N2—H2 | 125.9 | C7—C6—H6B | 108.8 |
| C3—N2—H2 | 125.9 | H6A—C6—H6B | 107.7 |
| C1—O1—Na1ii | 118.37 (16) | C6—C7—H7A | 109.5 |
| C4—O3—H3 | 109.5 | C6—C7—H7B | 109.5 |
| C4—O4—Na1i | 147.92 (17) | H7A—C7—H7B | 109.5 |
| C4—O4—Na1 | 113.65 (16) | C6—C7—H7C | 109.5 |
| Na1i—O4—Na1 | 95.84 (7) | H7A—C7—H7C | 109.5 |
| Na1—O1W—H1W | 104 (2) | H7B—C7—H7C | 109.5 |
| O4i—Na1—O4—C4 | 167.0 (2) | N1—C2—C3—N2 | 0.6 (3) |
| O1W—Na1—O4—C4 | −107.73 (17) | C1—C2—C3—N2 | 178.7 (2) |
| O1ii—Na1—O4—C4 | 86.20 (17) | N1—C2—C3—C4 | −176.6 (3) |
| N1ii—Na1—O4—C4 | 17.68 (17) | C1—C2—C3—C4 | 1.5 (5) |
| Na1i—Na1—O4—C4 | 167.0 (2) | Na1i—O4—C4—O3 | −121.0 (3) |
| O4i—Na1—O4—Na1i | 0.0 | Na1—O4—C4—O3 | 83.8 (3) |
| O1W—Na1—O4—Na1i | 85.23 (7) | Na1i—O4—C4—C3 | 59.2 (4) |
| O1ii—Na1—O4—Na1i | −80.84 (7) | Na1—O4—C4—C3 | −96.0 (2) |
| N1ii—Na1—O4—Na1i | −149.36 (8) | N2—C3—C4—O4 | −5.9 (4) |
| Na1ii—O1—C1—O2 | −168.77 (19) | C2—C3—C4—O4 | 171.0 (3) |
| Na1ii—O1—C1—C2 | 10.4 (3) | N2—C3—C4—O3 | 174.3 (2) |
| C5—N1—C2—C3 | −1.1 (3) | C2—C3—C4—O3 | −8.9 (4) |
| Na1ii—N1—C2—C3 | 164.78 (16) | C2—N1—C5—N2 | 1.1 (3) |
| C5—N1—C2—C1 | −179.3 (2) | Na1ii—N1—C5—N2 | −157.43 (19) |
| Na1ii—N1—C2—C1 | −13.5 (3) | C2—N1—C5—C6 | −178.6 (3) |
| O1—C1—C2—C3 | −175.0 (3) | Na1ii—N1—C5—C6 | 22.8 (5) |
| O2—C1—C2—C3 | 4.3 (4) | C3—N2—C5—N1 | −0.7 (3) |
| O1—C1—C2—N1 | 2.9 (4) | C3—N2—C5—C6 | 179.0 (2) |
| O2—C1—C2—N1 | −177.8 (2) | N1—C5—C6—C7 | −5.9 (4) |
| C5—N2—C3—C2 | 0.0 (3) | N2—C5—C6—C7 | 174.4 (2) |
| C5—N2—C3—C4 | 177.7 (2) |
| H··· | ||||
| O3W—H6W···O2Wiii | 0.85 | 2.09 | 2.872 (3) | 154 |
| O3W—H5W···O2iv | 0.85 | 2.07 | 2.904 (3) | 165 |
| O2W—H4W···O3iv | 0.85 | 2.04 | 2.888 (3) | 174 |
| O2W—H3W···O1v | 0.85 | 1.96 | 2.812 (3) | 174 |
| O1W—H2W···O3Wvi | 0.84 (1) | 1.86 (1) | 2.701 (3) | 178 (3) |
| O1W—H1W···O1vii | 0.84 (1) | 2.33 (2) | 3.096 (3) | 152 (3) |
| O3—H3···O2 | 0.82 | 1.64 | 2.453 (2) | 168 |
| N2—H2···O1Wi | 0.86 | 2.01 | 2.857 (3) | 171 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3 | 0.85 | 2.09 | 2.872 (3) | 154 |
| O3 | 0.85 | 2.07 | 2.904 (3) | 165 |
| O2 | 0.85 | 2.04 | 2.888 (3) | 174 |
| O2 | 0.85 | 1.96 | 2.812 (3) | 174 |
| O1 | 0.84 (1) | 1.86 (1) | 2.701 (3) | 178 (3) |
| O1 | 0.84 (1) | 2.33 (2) | 3.096 (3) | 152 (3) |
| O3—H3⋯O2 | 0.82 | 1.64 | 2.453 (2) | 168 |
| N2—H2⋯O1 | 0.86 | 2.01 | 2.857 (3) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .