Literature DB >> 21522236

Poly[[[diaqua-sodium]-μ(3)-5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κN,O:O:O] monohydrate].

Shi-Jie Li, Xiao-Tian Ma, Wen-Dong Song, Xiao-Fei Li, Juan-Hua Liu.   

Abstract

In the title complex, {[Na(C(7)H(7)N(2)O(4))(H(2)O)(2)]·H(2)O}(n), the Na(I) atom exhibits a distorted octa-hedral geometry and is six-coordinated in an NO(5) environment. The equatorial plane is defined by three O atoms and one N atom from two distinct 5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ate (H(2)EIDC) ligands and one coordinated water mol-ecule, and the apical sites are occupied by one carboxyl O atom from one H(2)EIDC ligand and one O atom from the other coordinated water mol-ecule. The Na(I) atoms are linked by H(2)EIDC ligands, generating an infinite double chain along the a axis. These chains are further connected via O-H⋯O and N-H⋯O hydrogen bonds into a three-dimensional supra-molecular network.

Entities:  

Year:  2011        PMID: 21522236      PMCID: PMC3051994          DOI: 10.1107/S1600536811002741

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the rational design of metal coordination complexes, see: Sava et al. (2009 ▶); Lu et al. (2010 ▶); Xue et al. (2009 ▶). For H3IDC complexes with supra­molecular architectures, see: Zou et al. (2006 ▶); Li et al. (2006 ▶); Sun et al. (2005 ▶). For related coord­in­ation polymers based on H3EIDC, see: Wang et al. (2008 ▶); Zhang et al. (2010 ▶).

Experimental

Crystal data

[Na(C7H7N2O4)(H2O)2]·H2O M = 260.18 Monoclinic, a = 8.5231 (8) Å b = 7.0598 (7) Å c = 19.0329 (17) Å β = 98.880 (1)° V = 1131.51 (18) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 298 K 0.49 × 0.48 × 0.34 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.923, T max = 0.946 5410 measured reflections 1991 independent reflections 1549 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.04 1991 reflections 162 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002741/zl2345sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002741/zl2345Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C7H7N2O4)(H2O)2]·H2OF(000) = 544
Mr = 260.18Dx = 1.527 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1702 reflections
a = 8.5231 (8) Åθ = 2.5–25.9°
b = 7.0598 (7) ŵ = 0.17 mm1
c = 19.0329 (17) ÅT = 298 K
β = 98.880 (1)°Block, colorless
V = 1131.51 (18) Å30.49 × 0.48 × 0.34 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer1991 independent reflections
Radiation source: fine-focus sealed tube1549 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −6→10
Tmin = 0.923, Tmax = 0.946k = −8→8
5410 measured reflectionsl = −22→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0431P)2 + 0.658P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1991 reflectionsΔρmax = 0.33 e Å3
162 parametersΔρmin = −0.27 e Å3
9 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.116 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.93820 (11)0.32398 (16)0.56175 (5)0.0388 (4)
N10.3469 (2)0.7014 (3)0.42293 (10)0.0288 (5)
N20.5987 (2)0.6488 (3)0.41437 (10)0.0283 (5)
H20.68160.61650.39660.034*
O10.2192 (2)0.8220 (3)0.54163 (10)0.0413 (5)
O20.4583 (2)0.8601 (3)0.60539 (9)0.0361 (5)
O30.7371 (2)0.8029 (3)0.59418 (9)0.0361 (5)
H30.64530.83600.59530.054*
O40.8713 (2)0.6644 (3)0.51722 (9)0.0374 (5)
O1W1.1322 (2)0.5012 (3)0.63961 (10)0.0413 (5)
H1W1.132 (4)0.608 (2)0.6204 (13)0.062*
H2W1.152 (4)0.509 (4)0.6843 (6)0.062*
O2W1.0214 (2)0.0314 (3)0.61812 (10)0.0444 (6)
H3W1.0861−0.02630.59580.067*
H4W0.9347−0.03030.61280.067*
O3W0.3117 (3)0.0343 (4)0.71733 (11)0.0803 (9)
H5W0.3704−0.01610.69020.120*
H6W0.21350.02740.70050.120*
C10.3656 (3)0.8138 (4)0.54743 (13)0.0292 (6)
C20.4401 (3)0.7466 (3)0.48677 (12)0.0256 (6)
C30.5973 (3)0.7131 (3)0.48215 (12)0.0255 (6)
C40.7464 (3)0.7262 (4)0.53360 (13)0.0277 (6)
C50.4475 (3)0.6448 (4)0.38032 (13)0.0280 (6)
C60.4053 (3)0.5841 (5)0.30430 (13)0.0391 (7)
H6A0.45220.46100.29860.047*
H6B0.45120.67310.27440.047*
C70.2284 (3)0.5722 (5)0.27913 (15)0.0472 (8)
H7A0.18320.47700.30590.071*
H7B0.20940.53970.22960.071*
H7C0.18040.69250.28590.071*
U11U22U33U12U13U23
Na10.0261 (6)0.0525 (8)0.0381 (6)0.0021 (5)0.0057 (4)−0.0010 (5)
N10.0239 (11)0.0336 (12)0.0288 (11)0.0004 (9)0.0038 (9)0.0000 (9)
N20.0228 (11)0.0363 (13)0.0270 (11)0.0012 (9)0.0083 (8)−0.0012 (9)
O10.0241 (10)0.0583 (13)0.0433 (11)0.0016 (9)0.0107 (8)−0.0118 (10)
O20.0295 (10)0.0503 (12)0.0289 (10)0.0009 (8)0.0057 (7)−0.0098 (8)
O30.0243 (9)0.0520 (13)0.0319 (10)0.0009 (8)0.0033 (7)−0.0077 (9)
O40.0229 (10)0.0517 (13)0.0379 (10)0.0049 (8)0.0061 (8)−0.0022 (9)
O1W0.0422 (11)0.0494 (13)0.0332 (10)0.0032 (10)0.0086 (9)−0.0007 (9)
O2W0.0342 (10)0.0526 (13)0.0464 (12)0.0014 (9)0.0062 (8)−0.0099 (10)
O3W0.0568 (15)0.148 (3)0.0359 (12)0.0132 (16)0.0053 (10)−0.0115 (15)
C10.0279 (14)0.0297 (14)0.0312 (14)−0.0002 (11)0.0082 (11)0.0000 (11)
C20.0246 (12)0.0257 (13)0.0272 (12)−0.0007 (10)0.0056 (10)0.0015 (10)
C30.0257 (13)0.0260 (13)0.0255 (12)−0.0001 (10)0.0060 (10)0.0000 (10)
C40.0255 (13)0.0291 (14)0.0293 (13)−0.0002 (11)0.0062 (10)0.0011 (11)
C50.0266 (13)0.0307 (14)0.0272 (13)0.0003 (10)0.0054 (10)0.0006 (11)
C60.0391 (16)0.0506 (19)0.0275 (14)−0.0012 (13)0.0048 (11)−0.0024 (13)
C70.0446 (17)0.058 (2)0.0351 (15)−0.0049 (15)−0.0052 (12)0.0008 (14)
Na1—O4i2.378 (2)O4—Na1i2.378 (2)
Na1—O2W2.384 (2)O1W—H1W0.840 (11)
Na1—O1W2.396 (2)O1W—H2W0.843 (11)
Na1—O1ii2.433 (2)O2W—H3W0.8500
Na1—N1ii2.498 (2)O2W—H4W0.8500
Na1—O42.583 (2)O3W—H5W0.8500
N1—C51.329 (3)O3W—H6W0.8499
N1—C21.383 (3)C1—C21.480 (3)
N1—Na1ii2.498 (2)C2—C31.377 (3)
N2—C51.351 (3)C3—C41.482 (3)
N2—C31.369 (3)C5—C61.499 (3)
N2—H20.8600C6—C71.512 (4)
O1—C11.237 (3)C6—H6A0.9700
O1—Na1ii2.432 (2)C6—H6B0.9700
O2—C11.296 (3)C7—H7A0.9600
O3—C41.287 (3)C7—H7B0.9600
O3—H30.8200C7—H7C0.9600
O4—C41.234 (3)
O4i—Na1—O2W97.45 (7)Na1—O1W—H2W132 (2)
O4i—Na1—O1W84.24 (7)H1W—O1W—H2W111.4 (15)
O2W—Na1—O1W92.58 (7)Na1—O2W—H3W111.2
O4i—Na1—O1ii81.27 (7)Na1—O2W—H4W101.4
O2W—Na1—O1ii94.91 (8)H3W—O2W—H4W108.2
O1W—Na1—O1ii164.44 (8)H5W—O3W—H6W112.6
O4i—Na1—N1ii147.95 (8)O1—C1—O2122.6 (2)
O2W—Na1—N1ii96.45 (8)O1—C1—C2119.6 (2)
O1W—Na1—N1ii123.79 (8)O2—C1—C2117.8 (2)
O1ii—Na1—N1ii68.86 (7)C3—C2—N1109.7 (2)
O4i—Na1—O484.16 (7)C3—C2—C1130.1 (2)
O2W—Na1—O4171.50 (8)N1—C2—C1120.1 (2)
O1W—Na1—O479.24 (7)N2—C3—C2105.48 (19)
O1ii—Na1—O493.59 (7)N2—C3—C4120.8 (2)
N1ii—Na1—O486.31 (7)C2—C3—C4133.7 (2)
O4i—Na1—Na1i44.22 (5)O4—C4—O3123.3 (2)
O2W—Na1—Na1i140.98 (7)O4—C4—C3119.7 (2)
O1W—Na1—Na1i78.72 (6)O3—C4—C3116.9 (2)
O1ii—Na1—Na1i86.90 (6)N1—C5—N2111.0 (2)
N1ii—Na1—Na1i120.13 (7)N1—C5—C6126.4 (2)
O4—Na1—Na1i39.94 (4)N2—C5—C6122.6 (2)
C5—N1—C2105.55 (19)C5—C6—C7113.6 (2)
C5—N1—Na1ii141.28 (17)C5—C6—H6A108.8
C2—N1—Na1ii110.58 (15)C7—C6—H6A108.8
C5—N2—C3108.2 (2)C5—C6—H6B108.8
C5—N2—H2125.9C7—C6—H6B108.8
C3—N2—H2125.9H6A—C6—H6B107.7
C1—O1—Na1ii118.37 (16)C6—C7—H7A109.5
C4—O3—H3109.5C6—C7—H7B109.5
C4—O4—Na1i147.92 (17)H7A—C7—H7B109.5
C4—O4—Na1113.65 (16)C6—C7—H7C109.5
Na1i—O4—Na195.84 (7)H7A—C7—H7C109.5
Na1—O1W—H1W104 (2)H7B—C7—H7C109.5
O4i—Na1—O4—C4167.0 (2)N1—C2—C3—N20.6 (3)
O1W—Na1—O4—C4−107.73 (17)C1—C2—C3—N2178.7 (2)
O1ii—Na1—O4—C486.20 (17)N1—C2—C3—C4−176.6 (3)
N1ii—Na1—O4—C417.68 (17)C1—C2—C3—C41.5 (5)
Na1i—Na1—O4—C4167.0 (2)Na1i—O4—C4—O3−121.0 (3)
O4i—Na1—O4—Na1i0.0Na1—O4—C4—O383.8 (3)
O1W—Na1—O4—Na1i85.23 (7)Na1i—O4—C4—C359.2 (4)
O1ii—Na1—O4—Na1i−80.84 (7)Na1—O4—C4—C3−96.0 (2)
N1ii—Na1—O4—Na1i−149.36 (8)N2—C3—C4—O4−5.9 (4)
Na1ii—O1—C1—O2−168.77 (19)C2—C3—C4—O4171.0 (3)
Na1ii—O1—C1—C210.4 (3)N2—C3—C4—O3174.3 (2)
C5—N1—C2—C3−1.1 (3)C2—C3—C4—O3−8.9 (4)
Na1ii—N1—C2—C3164.78 (16)C2—N1—C5—N21.1 (3)
C5—N1—C2—C1−179.3 (2)Na1ii—N1—C5—N2−157.43 (19)
Na1ii—N1—C2—C1−13.5 (3)C2—N1—C5—C6−178.6 (3)
O1—C1—C2—C3−175.0 (3)Na1ii—N1—C5—C622.8 (5)
O2—C1—C2—C34.3 (4)C3—N2—C5—N1−0.7 (3)
O1—C1—C2—N12.9 (4)C3—N2—C5—C6179.0 (2)
O2—C1—C2—N1−177.8 (2)N1—C5—C6—C7−5.9 (4)
C5—N2—C3—C20.0 (3)N2—C5—C6—C7174.4 (2)
C5—N2—C3—C4177.7 (2)
D—H···AD—HH···AD···AD—H···A
O3W—H6W···O2Wiii0.852.092.872 (3)154
O3W—H5W···O2iv0.852.072.904 (3)165
O2W—H4W···O3iv0.852.042.888 (3)174
O2W—H3W···O1v0.851.962.812 (3)174
O1W—H2W···O3Wvi0.84 (1)1.86 (1)2.701 (3)178 (3)
O1W—H1W···O1vii0.84 (1)2.33 (2)3.096 (3)152 (3)
O3—H3···O20.821.642.453 (2)168
N2—H2···O1Wi0.862.012.857 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3W—H6W⋯O2Wi0.852.092.872 (3)154
O3W—H5W⋯O2ii0.852.072.904 (3)165
O2W—H4W⋯O3ii0.852.042.888 (3)174
O2W—H3W⋯O1iii0.851.962.812 (3)174
O1W—H2W⋯O3Wiv0.84 (1)1.86 (1)2.701 (3)178 (3)
O1W—H1W⋯O1v0.84 (1)2.33 (2)3.096 (3)152 (3)
O3—H3⋯O20.821.642.453 (2)168
N2—H2⋯O1Wvi0.862.012.857 (3)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

2.  2-Ethyl-1H-imidazole-4-carboxyl-ate monohydrate.

Authors:  Shi-Jie Li; Juan-Hua Liu; Wen-Dong Song; Xiao-Fei Li; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

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4.  Diaqua-bis-(4-carb-oxy-2-ethyl-1H-imidazole-5-carboxyl-ato-κN,O)manganese(II) N,N-dimethyl-formamide disolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-04

5.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)cadmium N,N-dimethyl-formamide disolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

6.  Diaqua-bis-(5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κ(2)N(3),O(4))cobalt(II) trihydrate.

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7.  cis-Tetra-aqua-bis-{5-[4-(1H-imidazol-1-yl-κN(3))phen-yl]tetra-zolido}manganese(II) dihydrate.

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