Literature DB >> 22589808

cis-Tetra-aqua-bis-{5-[4-(1H-imidazol-1-yl-κN(3))phen-yl]tetra-zolido}manganese(II) dihydrate.

Shao-Wei Tong, Wen-Dong Song, Dong-Liang Miao, Shi-Jie Li, Jing-Bo An.   

Abstract

In the title compound, [Mn(C(10)H(7)N(6))(2)(H(2)O)(4)]·2H(2)O, the Mn(2+) lies on a twofold rotation axis and is six-coordinated by two N atoms from the cis-related monodentate 5-[4-(imidazol-1-yl)phen-yl]tetra-zolide ligands and four O atoms from the coordinated water mol-ecules. The complex mol-ecules are connected via water O-H⋯O and O-H⋯N hydrogen bonds and weak π-π stacking inter-actions between the benzene rings [minimum ring centroid separation = 3.750 (6) Å] into a three-dimensional polymeric structure. The imidazolyl group of the ligand is partially disordered over two sets of sites with refined occupancies of 0.531 (7):0.469 (7).

Entities:  

Year:  2012        PMID: 22589808      PMCID: PMC3343834          DOI: 10.1107/S1600536812010446

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our previous work based on imidazole derivatives as ligands, see: Li, Song et al. (2011 ▶); Li, Ma et al. (2011 ▶); Fan et al. (2010 ▶); Li et al. (2010 ▶). For related structures, see: Huang et al. (2009 ▶); Cheng (2011 ▶). An independent determination of the title structure is reported by Wang et al. (2012 ▶).

Experimental

Crystal data

[Mn(C10H7N6)2(H2O)4]·2H2O M = 585.47 Monoclinic, a = 19.1342 (18) Å b = 13.2100 (4) Å c = 13.3280 (13) Å β = 131.056 (2)° V = 2540.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.58 mm−1 T = 294 K 0.80 × 0.11 × 0.10 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.653, T max = 0.944 8421 measured reflections 2239 independent reflections 1957 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.142 S = 1.31 2239 reflections 196 parameters 512 restraints H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.55 e Å−3 Data collection: RAPID-AUTO (Rigaku/MSC, 1998) ▶; cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010446/zs2182sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010446/zs2182Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C10H7N6)2(H2O)4]·2H2OF(000) = 1212
Mr = 585.47Dx = 1.531 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3180 reflections
a = 19.1342 (18) Åθ = 3.1–30.0°
b = 13.2100 (4) ŵ = 0.58 mm1
c = 13.3280 (13) ÅT = 294 K
β = 131.056 (2)°Block, colourless
V = 2540.3 (4) Å30.80 × 0.11 × 0.10 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer2239 independent reflections
Radiation source: fine-focus sealed tube1957 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
ω scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −22→22
Tmin = 0.653, Tmax = 0.944k = −15→15
8421 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.31w = 1/[σ2(Fo2) + (0.0076P)2 + 23.3787P] where P = (Fo2 + 2Fc2)/3
2239 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 0.34 e Å3
512 restraintsΔρmin = −0.55 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Mn10.50000.14050 (7)0.75000.0114 (2)
N10.4195 (3)0.3148 (3)0.9401 (4)0.0197 (8)
N20.4707 (3)0.2569 (3)0.8420 (4)0.0189 (8)
N30.2780 (3)0.3910 (3)1.2697 (4)0.0190 (8)
N40.2668 (3)0.3553 (3)1.3534 (4)0.0201 (8)
N50.2945 (2)0.2610 (3)1.3831 (3)0.0158 (8)
N60.3247 (2)0.2320 (3)1.3206 (3)0.0149 (7)
O10.65066 (19)0.1248 (2)0.9144 (3)0.0164 (7)
H1C0.68600.13150.89710.020*
H1D0.66800.16640.97570.020*
O20.5016 (2)0.0210 (2)0.6390 (3)0.0172 (7)
H2C0.45500.02600.55640.021*
H2D0.54830.00450.64770.021*
O30.3656 (2)0.0306 (2)0.3671 (3)0.0178 (7)
H3D0.3190−0.00690.33540.021*
H3E0.34660.09120.34260.021*
C10.4461 (3)0.2365 (3)0.9100 (5)0.0227 (10)
H10.44710.17080.93620.027*
C20.4225 (6)0.3504 (6)0.7794 (8)0.0186 (17)0.531 (7)
H20.41490.38140.71020.022*0.531 (7)
C30.3898 (6)0.3863 (6)0.8365 (8)0.0184 (17)0.531 (7)
H30.35530.44500.81390.022*0.531 (7)
C2'0.5005 (7)0.3579 (7)0.8818 (9)0.0181 (19)0.469 (7)
H2'0.53480.39380.86690.022*0.469 (7)
C3'0.4721 (7)0.3956 (7)0.9450 (9)0.0192 (19)0.469 (7)
H3'0.48400.45930.98280.023*0.469 (7)
C40.3907 (3)0.3145 (3)1.0161 (4)0.0148 (8)
C50.3558 (3)0.4030 (3)1.0259 (4)0.0172 (9)
H50.35010.46160.98220.021*
C60.3299 (3)0.4027 (3)1.1017 (4)0.0178 (9)
H60.30600.46131.10800.021*
C70.3392 (3)0.3158 (3)1.1684 (4)0.0133 (8)
C80.3722 (3)0.2276 (3)1.1547 (4)0.0153 (9)
H80.37670.16841.19630.018*
C90.3986 (3)0.2275 (3)1.0794 (4)0.0180 (9)
H90.42160.16871.07180.022*
C100.3140 (3)0.3136 (3)1.2521 (4)0.0139 (9)
U11U22U33U12U13U23
Mn10.0141 (5)0.0116 (4)0.0135 (5)0.0000.0113 (4)0.000
N10.031 (2)0.0127 (17)0.031 (2)0.0007 (15)0.0271 (18)−0.0012 (15)
N20.026 (2)0.0149 (18)0.0275 (19)−0.0026 (16)0.0226 (17)−0.0031 (15)
N30.027 (2)0.0169 (19)0.026 (2)0.0046 (16)0.0230 (18)0.0029 (15)
N40.029 (2)0.0180 (18)0.0255 (19)0.0026 (17)0.0233 (18)0.0018 (16)
N50.0204 (19)0.0150 (18)0.0179 (18)0.0006 (15)0.0152 (16)0.0009 (14)
N60.0191 (18)0.0152 (18)0.0150 (17)0.0001 (15)0.0132 (15)0.0001 (14)
O10.0183 (15)0.0209 (16)0.0174 (15)−0.0029 (13)0.0148 (14)−0.0036 (13)
O20.0157 (16)0.0216 (16)0.0178 (15)0.0008 (13)0.0124 (14)−0.0021 (13)
O30.0195 (16)0.0145 (15)0.0229 (16)0.0009 (13)0.0155 (14)−0.0001 (13)
C10.038 (3)0.015 (2)0.031 (2)0.0024 (19)0.030 (2)−0.0001 (18)
C20.026 (4)0.015 (4)0.024 (4)0.001 (3)0.020 (3)0.001 (3)
C30.025 (4)0.012 (3)0.026 (4)0.002 (3)0.020 (3)0.001 (3)
C2'0.028 (4)0.013 (4)0.024 (4)−0.006 (3)0.022 (3)−0.003 (3)
C3'0.026 (4)0.018 (4)0.024 (4)−0.003 (3)0.021 (3)−0.001 (3)
C40.015 (2)0.017 (2)0.019 (2)−0.0056 (16)0.0138 (17)−0.0053 (16)
C50.024 (2)0.013 (2)0.021 (2)−0.0015 (17)0.0177 (18)0.0002 (17)
C60.022 (2)0.016 (2)0.024 (2)0.0031 (17)0.0188 (19)−0.0001 (17)
C70.014 (2)0.016 (2)0.0128 (19)0.0001 (16)0.0102 (17)−0.0004 (16)
C80.018 (2)0.013 (2)0.0155 (19)−0.0002 (17)0.0114 (17)0.0010 (16)
C90.021 (2)0.017 (2)0.023 (2)0.0031 (17)0.0173 (18)−0.0016 (17)
C100.014 (2)0.0125 (19)0.016 (2)0.0001 (16)0.0098 (17)−0.0007 (16)
Mn1—O2i2.177 (3)O2—H2D0.8500
Mn1—O22.177 (3)O3—H3D0.8500
Mn1—O12.204 (3)O3—H3E0.8499
Mn1—O1i2.204 (3)C1—H10.9300
Mn1—N22.256 (4)C2—C31.349 (11)
Mn1—N2i2.256 (4)C2—H20.9300
N1—C11.327 (6)C3—H30.9300
N1—C41.436 (5)C2'—C3'1.361 (12)
N1—C3'1.438 (10)C2'—H2'0.9300
N1—C31.446 (9)C3'—H3'0.9300
N2—C11.293 (5)C4—C91.374 (6)
N2—C2'1.410 (10)C4—C51.393 (6)
N2—C21.436 (9)C5—C61.389 (6)
N3—C101.336 (5)C5—H50.9300
N3—N41.352 (5)C6—C71.390 (6)
N4—N51.309 (5)C6—H60.9300
N5—N61.346 (5)C7—C81.393 (6)
N6—C101.338 (5)C7—C101.478 (5)
O1—H1C0.8500C8—C91.388 (6)
O1—H1D0.8501C8—H80.9300
O2—H2C0.8500C9—H90.9300
O2i—Mn1—O287.07 (16)H3D—O3—H3E108.3
O2i—Mn1—O181.34 (11)N2—C1—N1115.9 (4)
O2—Mn1—O190.81 (11)N2—C1—H1122.0
O2i—Mn1—O1i90.81 (11)N1—C1—H1122.0
O2—Mn1—O1i81.34 (11)C3—C2—N2109.5 (7)
O1—Mn1—O1i169.20 (16)C3—C2—H2125.3
O2i—Mn1—N290.29 (12)N2—C2—H2125.3
O2—Mn1—N2169.50 (12)C2—C3—N1105.8 (7)
O1—Mn1—N298.84 (12)C2—C3—H3127.1
O1i—Mn1—N288.54 (12)N1—C3—H3127.1
O2i—Mn1—N2i169.50 (12)C3'—C2'—N2110.6 (7)
O2—Mn1—N2i90.29 (12)C3'—C2'—H2'124.7
O1—Mn1—N2i88.54 (12)N2—C2'—H2'124.7
O1i—Mn1—N2i98.84 (12)C2'—C3'—N1104.6 (7)
N2—Mn1—N2i94.05 (18)C2'—C3'—H3'127.7
C1—N1—C4127.8 (4)N1—C3'—H3'127.7
C1—N1—C3'101.3 (5)C9—C4—C5120.7 (4)
C4—N1—C3'123.5 (5)C9—C4—N1119.8 (4)
C1—N1—C3102.0 (4)C5—C4—N1119.5 (4)
C4—N1—C3125.7 (4)C6—C5—C4119.2 (4)
C3'—N1—C351.9 (5)C6—C5—H5120.4
C1—N2—C2'100.2 (5)C4—C5—H5120.4
C1—N2—C2101.3 (4)C5—C6—C7120.8 (4)
C2'—N2—C249.6 (5)C5—C6—H6119.6
C1—N2—Mn1125.0 (3)C7—C6—H6119.6
C2'—N2—Mn1131.7 (4)C6—C7—C8119.0 (4)
C2—N2—Mn1124.4 (4)C6—C7—C10122.0 (4)
C10—N3—N4104.9 (3)C8—C7—C10119.0 (4)
N5—N4—N3109.2 (3)C9—C8—C7120.5 (4)
N4—N5—N6109.8 (3)C9—C8—H8119.7
C10—N6—N5104.8 (3)C7—C8—H8119.7
Mn1—O1—H1C118.3C4—C9—C8119.8 (4)
Mn1—O1—H1D108.9C4—C9—H9120.1
H1C—O1—H1D108.4C8—C9—H9120.1
Mn1—O2—H2C110.6N3—C10—N6111.3 (4)
Mn1—O2—H2D125.2N3—C10—C7125.3 (4)
H2C—O2—H2D108.1N6—C10—C7123.4 (4)
O2i—Mn1—N2—C1−11.2 (4)C1—N2—C2'—C3'−13.7 (9)
O2—Mn1—N2—C164.1 (9)C2—N2—C2'—C3'82.6 (9)
O1—Mn1—N2—C1−92.5 (4)Mn1—N2—C2'—C3'−173.9 (5)
O1i—Mn1—N2—C179.6 (4)N2—C2'—C3'—N1−1.9 (10)
N2i—Mn1—N2—C1178.3 (5)C1—N1—C3'—C2'16.4 (8)
O2i—Mn1—N2—C2'144.8 (6)C4—N1—C3'—C2'168.1 (6)
O2—Mn1—N2—C2'−139.8 (8)C3—N1—C3'—C2'−80.2 (8)
O1—Mn1—N2—C2'63.5 (6)C1—N1—C4—C97.3 (7)
O1i—Mn1—N2—C2'−124.4 (6)C3'—N1—C4—C9−136.7 (6)
N2i—Mn1—N2—C2'−25.6 (6)C3—N1—C4—C9159.1 (5)
O2i—Mn1—N2—C2−151.5 (5)C1—N1—C4—C5−173.4 (5)
O2—Mn1—N2—C2−76.1 (9)C3'—N1—C4—C542.6 (7)
O1—Mn1—N2—C2127.2 (5)C3—N1—C4—C5−21.6 (7)
O1i—Mn1—N2—C2−60.7 (5)C9—C4—C5—C60.6 (7)
N2i—Mn1—N2—C238.1 (4)N1—C4—C5—C6−178.7 (4)
C10—N3—N4—N5−0.3 (5)C4—C5—C6—C70.6 (7)
N3—N4—N5—N60.1 (5)C5—C6—C7—C8−2.0 (7)
N4—N5—N6—C100.2 (4)C5—C6—C7—C10178.7 (4)
C2'—N2—C1—N127.0 (6)C6—C7—C8—C92.3 (6)
C2—N2—C1—N1−23.5 (6)C10—C7—C8—C9−178.5 (4)
Mn1—N2—C1—N1−170.9 (3)C5—C4—C9—C8−0.4 (7)
C4—N1—C1—N2−178.7 (4)N1—C4—C9—C8178.9 (4)
C3'—N1—C1—N2−28.7 (6)C7—C8—C9—C4−1.0 (7)
C3—N1—C1—N224.4 (6)N4—N3—C10—N60.5 (5)
C1—N2—C2—C312.3 (8)N4—N3—C10—C7−179.7 (4)
C2'—N2—C2—C3−81.5 (8)N5—N6—C10—N3−0.4 (5)
Mn1—N2—C2—C3160.0 (5)N5—N6—C10—C7179.7 (4)
N2—C2—C3—N11.1 (9)C6—C7—C10—N32.2 (7)
C1—N1—C3—C2−13.8 (7)C8—C7—C10—N3−177.1 (4)
C4—N1—C3—C2−171.3 (5)C6—C7—C10—N6−178.0 (4)
C3'—N1—C3—C281.2 (8)C8—C7—C10—N62.8 (6)
D—H···AD—HH···AD···AD—H···A
O3—H3E···N5ii0.852.653.397 (4)147
O3—H3E···N6ii0.851.892.726 (4)169
O3—H3D···N4iii0.852.633.261 (5)132
O3—H3D···N3iii0.851.952.774 (5)162
O2—H2D···O3iv0.851.842.684 (4)170
O2—H2C···O30.851.902.745 (4)170
O1—H1D···N5v0.851.962.811 (4)179
O1—H1C···N5vi0.852.623.396 (4)152
O1—H1C···N4vi0.851.992.835 (4)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3E⋯N5i0.852.653.397 (4)147
O3—H3E⋯N6i0.851.892.726 (4)169
O3—H3D⋯N4ii0.852.633.261 (5)132
O3—H3D⋯N3ii0.851.952.774 (5)162
O2—H2D⋯O3iii0.851.842.684 (4)170
O2—H2C⋯O30.851.902.745 (4)170
O1—H1D⋯N5iv0.851.962.811 (4)179
O1—H1C⋯N5v0.852.623.396 (4)152
O1—H1C⋯N4v0.851.992.835 (4)179

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[[[diaqua-sodium]-μ(3)-5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κN,O:O:O] monohydrate].

Authors:  Shi-Jie Li; Xiao-Tian Ma; Wen-Dong Song; Xiao-Fei Li; Juan-Hua Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02

3.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) tetra-hydrate.

Authors:  Run-Zhen Fan; Shi-Jie Li; Wen-Dong Song; Dong-Liang Miao; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

4.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) 3.5-hydrate.

Authors:  Shi-Jie Li; Dong-Liang Miao; Wen-Dong Song; Shi-Hong Li; Jian-Bin Yan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

5.  Tetra-aqua-bis-{5-[4-(imidazol-1-yl-κN)phen-yl]tetra-zolido}manganese(II).

Authors:  Xiao-Chun Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12

6.  cis-Tetra-aqua-bis-{5-[4-(1H-imidazol-1-yl-κN(3))phen-yl]tetra-zolido}manganese(II) dihydrate.

Authors:  Xin Wang; Shi-Wei Yan; Suo-Cheng Chang; Yan-Chen Liang; Fu-Tian Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14
  6 in total
  1 in total

1.  5-[4-(1H-Imidazol-1-yl)phen-yl]-1H-tetra-zole.

Authors:  Shao-Wei Tong; Wen-Dong Song; Shi-Jie Li; Dong-Liang Miao; Jing-Bo An
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-04
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.