Literature DB >> 21754252

2-Ethyl-1H-imidazole-4-carboxyl-ate monohydrate.

Shi-Jie Li, Juan-Hua Liu, Wen-Dong Song, Xiao-Fei Li, Dong-Liang Miao.   

Abstract

In the title compound, C(7)H(8)N(2)O(4)·H(2)O, the imidazole N atom is protonated and one of the carboxyl-ate groups is deprontonated, forming a zwitterion. The two carboxyl groups are are approximately coplanar with the imidazole ring [O-C-C-C torsion angles = -176.8 (2) and 2.9 (4)° for one group and -4.6 (3) and 176.4 (2)° for the other] and have an intra-molecular O-H⋯O hydrogen bond between them. The water mol-ecule is linked to the organic mol-ecules via an N-H⋯O hydrogen bonds. Inter-molecular O-H⋯O and N-H⋯O hydrogen bonds are found in the crystal structure.

Entities:  

Year:  2011        PMID: 21754252      PMCID: PMC3100020          DOI: 10.1107/S1600536811010774

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our past work based on the 2-propyl-1H-imidazole-4,5-carboxyl­ate (H3pimda) ligand, see: Yan et al. (2010 ▶); Li et al. (2010 ▶); Song et al. (2010 ▶); He et al. (2010 ▶); Fan et al. (2010 ▶). For related coordination polymers based on H3EIDC (2-ethyl-1H-imidazole-4,5-dicarboxyl­ate), see: Wang et al. (2008 ▶); Zhang et al. (2010 ▶); Li et al. (2011 ▶). For the synthesis of H3EIDC, see: Sun et al. (2006 ▶).

Experimental

Crystal data

C7H10N2O5 M = 202.17 Monoclinic, a = 7.6132 (6) Å b = 14.3779 (16) Å c = 7.9396 (8) Å β = 97.799 (1)° V = 861.04 (15) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.50 × 0.41 × 0.40 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.936, T max = 0.948 4224 measured reflections 1510 independent reflections 1166 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.106 S = 1.05 1510 reflections 129 parameters 3 restraints H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, 1R. DOI: 10.1107/S1600536811010774/jh2272sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010774/jh2272Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H10N2O5F(000) = 424
Mr = 202.17Dx = 1.560 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1702 reflections
a = 7.6132 (6) Åθ = 2.5–25.9°
b = 14.3779 (16) ŵ = 0.13 mm1
c = 7.9396 (8) ÅT = 298 K
β = 97.799 (1)°Block, colorless
V = 861.04 (15) Å30.50 × 0.41 × 0.40 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer1510 independent reflections
Radiation source: fine-focus sealed tube1166 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −9→8
Tmin = 0.936, Tmax = 0.948k = −17→13
4224 measured reflectionsl = −9→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.047P)2 + 0.3916P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1510 reflectionsΔρmax = 0.28 e Å3
129 parametersΔρmin = −0.21 e Å3
3 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.060 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4705 (2)0.42162 (11)0.2301 (2)0.0314 (4)
H10.48600.48050.22080.038*
N20.3607 (2)0.29056 (11)0.2927 (2)0.0305 (4)
H20.29320.24990.33080.037*
O10.7740 (2)0.46097 (10)0.0811 (2)0.0517 (5)
O20.8238 (2)0.31103 (10)0.0434 (2)0.0457 (5)
H2A0.77700.26190.06530.069*
O30.6974 (2)0.16119 (9)0.1124 (2)0.0433 (4)
O40.4800 (2)0.11124 (9)0.2502 (2)0.0436 (4)
O1W0.8455 (2)0.65550 (10)0.0862 (2)0.0501 (5)
H1W0.94760.65820.05430.075*
H2W0.81890.59950.10570.075*
C10.7364 (3)0.37964 (14)0.0950 (3)0.0356 (5)
C20.5789 (3)0.35434 (13)0.1777 (2)0.0295 (5)
C30.5090 (3)0.27125 (13)0.2173 (2)0.0282 (5)
C40.5648 (3)0.17372 (13)0.1935 (3)0.0314 (5)
C50.3383 (3)0.38238 (13)0.2972 (3)0.0310 (5)
C60.1908 (3)0.43371 (15)0.3579 (3)0.0466 (6)
H6A0.12120.46320.26100.056*
H6B0.24030.48270.43400.056*
C70.0694 (3)0.37559 (17)0.4485 (3)0.0528 (7)
H7A0.02210.32570.37580.079*
H7B−0.02590.41350.47730.079*
H7C0.13450.35040.55030.079*
U11U22U33U12U13U23
N10.0332 (9)0.0177 (8)0.0455 (11)0.0005 (7)0.0140 (8)0.0015 (7)
N20.0316 (9)0.0200 (8)0.0425 (10)−0.0005 (6)0.0145 (8)0.0011 (7)
O10.0503 (10)0.0288 (9)0.0821 (13)−0.0062 (7)0.0310 (9)0.0027 (8)
O20.0437 (9)0.0295 (8)0.0707 (11)0.0011 (7)0.0321 (8)0.0009 (7)
O30.0479 (9)0.0275 (8)0.0601 (10)0.0068 (6)0.0272 (8)−0.0009 (7)
O40.0460 (9)0.0202 (7)0.0690 (11)0.0006 (6)0.0236 (8)0.0029 (7)
O1W0.0479 (10)0.0283 (8)0.0813 (12)−0.0006 (7)0.0344 (9)−0.0023 (8)
C10.0344 (11)0.0281 (11)0.0466 (13)0.0005 (9)0.0137 (10)0.0017 (9)
C20.0306 (11)0.0234 (10)0.0355 (11)0.0029 (8)0.0087 (9)−0.0001 (8)
C30.0296 (10)0.0222 (10)0.0340 (11)0.0015 (8)0.0090 (9)−0.0005 (8)
C40.0337 (11)0.0227 (10)0.0389 (12)0.0023 (8)0.0092 (9)−0.0002 (9)
C50.0313 (11)0.0222 (10)0.0414 (12)0.0011 (8)0.0124 (9)0.0005 (9)
C60.0433 (13)0.0273 (12)0.0751 (17)0.0048 (9)0.0295 (13)−0.0017 (11)
C70.0468 (14)0.0451 (14)0.0734 (17)0.0080 (11)0.0334 (13)0.0037 (13)
N1—C51.327 (2)O1W—H2W0.8501
N1—C21.372 (2)C1—C21.488 (3)
N1—H10.8600C2—C31.362 (3)
N2—C51.332 (3)C3—C41.485 (3)
N2—C31.376 (2)C5—C61.478 (3)
N2—H20.8600C6—C71.500 (3)
O1—C11.212 (2)C6—H6A0.9700
O2—C11.288 (2)C6—H6B0.9700
O2—H2A0.8200C7—H7A0.9600
O3—C41.281 (2)C7—H7B0.9600
O4—C41.227 (2)C7—H7C0.9600
O1W—H1W0.8500
C5—N1—C2110.02 (16)O4—C4—C3118.07 (17)
C5—N1—H1125.0O3—C4—C3117.11 (17)
C2—N1—H1125.0N1—C5—N2107.67 (16)
C5—N2—C3109.11 (15)N1—C5—C6124.74 (17)
C5—N2—H2125.4N2—C5—C6127.55 (17)
C3—N2—H2125.4C5—C6—C7115.01 (18)
C1—O2—H2A109.5C5—C6—H6A108.5
H1W—O1W—H2W110.3C7—C6—H6A108.5
O1—C1—O2124.86 (19)C5—C6—H6B108.5
O1—C1—C2119.35 (18)C7—C6—H6B108.5
O2—C1—C2115.80 (17)H6A—C6—H6B107.5
C3—C2—N1106.15 (16)C6—C7—H7A109.5
C3—C2—C1132.84 (18)C6—C7—H7B109.5
N1—C2—C1121.01 (17)H7A—C7—H7B109.5
C2—C3—N2107.05 (16)C6—C7—H7C109.5
C2—C3—C4132.14 (17)H7A—C7—H7C109.5
N2—C3—C4120.81 (17)H7B—C7—H7C109.5
O4—C4—O3124.82 (17)
C5—N1—C2—C3−0.7 (2)C5—N2—C3—C4−179.30 (18)
C5—N1—C2—C1179.02 (18)C2—C3—C4—O4176.4 (2)
O1—C1—C2—C3−176.8 (2)N2—C3—C4—O4−3.4 (3)
O2—C1—C2—C32.9 (4)C2—C3—C4—O3−4.6 (3)
O1—C1—C2—N13.5 (3)N2—C3—C4—O3175.56 (18)
O2—C1—C2—N1−176.74 (19)C2—N1—C5—N21.3 (2)
N1—C2—C3—N2−0.1 (2)C2—N1—C5—C6−176.3 (2)
C1—C2—C3—N2−179.8 (2)C3—N2—C5—N1−1.3 (2)
N1—C2—C3—C4−179.9 (2)C3—N2—C5—C6176.2 (2)
C1—C2—C3—C40.4 (4)N1—C5—C6—C7−172.7 (2)
C5—N2—C3—C20.9 (2)N2—C5—C6—C710.2 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.861.912.754 (2)168
N2—H2···O1Wii0.861.892.751 (2)177
O2—H2A···O30.821.632.452 (2)176
O1W—H1W···O2iii0.852.052.8863 (19)169
O1W—H2W···O10.852.032.849 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.861.912.754 (2)168
N2—H2⋯O1Wii0.861.892.751 (2)177
O2—H2A⋯O30.821.632.452 (2)176
O1W—H1W⋯O2iii0.852.052.8863 (19)169
O1W—H2W⋯O10.852.032.849 (2)163

Symmetry codes: (i) ; (ii) ; (iii) .

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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[diaqua-bis(μ-4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O:O)calcium(II)].

Authors:  Wen-Dong Song; Jian-Bin Yan; Shi-Jie Li; Dong-Liang Miao; Xiao-Fei Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

4.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II) N,N-dimethyl-formamide disolvate.

Authors:  Jian-Bin Yan; Shi-Jie Li; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

5.  Diaqua-bis(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) N,N-dimethyl-formamide disolvate.

Authors:  Shi-Jie Li; Jian-Bin Yan; Wen-Dong Song; Hao Wang; Dong-Liang Miao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

6.  Poly[[[diaqua-sodium]-μ(3)-5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κN,O:O:O] monohydrate].

Authors:  Shi-Jie Li; Xiao-Tian Ma; Wen-Dong Song; Xiao-Fei Li; Juan-Hua Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02

7.  Diaqua-bis-(5-carb-oxy-2-propyl-1H-imidazole-4-carboxyl-ato-κN,O)nickel(II) tetra-hydrate.

Authors:  Run-Zhen Fan; Shi-Jie Li; Wen-Dong Song; Dong-Liang Miao; Shi-Wei Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

8.  Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)copper(II) N,N-dimethyl-formamide disolvate.

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  8 in total

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