Literature DB >> 22589767

Diaqua-bis-(5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κ(2)N(3),O(4))cobalt(II) trihydrate.

Dong-Liang Miao, Shi-Jie Li, Wen-Dong Song, Shao-Wei Tong, Seik Weng Ng.   

Abstract

In the title compound, [Co(C(7)H(7)N(2)O(4))(2)(H(2)O)(2)]·3H(2)O, the Co(II) cation, located on an inversion center, is N,O-chelated by two 5-carboxy-2-ethyl-1H-imidazole-4-carboxylate anions and further coordinated by two water mol-ecules in a distorted octa-hedral geometry. Only one carboxy group of the anion is deprotonated, and the two carboxyl groups of the same anion are linked via an intra-molecular O-H⋯O hydrogen bond. One of the lattice water mol-ecules is located on an inversion center, its H atom equally disordered over two positions. One of H atoms of another lattice water mol-ecules is also equally disordered over two sites. Water H atoms and the amino H atom all are involved in an inter-molecular hydrogen-bonded network in the crystal.

Entities:  

Year:  2012        PMID: 22589767      PMCID: PMC3343793          DOI: 10.1107/S1600536812008902

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related metal complexes with imidazole-4,5-dicarboxyl­ate ligands, see: Fan et al. (2010 ▶); Li et al. (2011 ▶); Yan et al. (2010 ▶); Song et al. (2010 ▶); He et al. (2010 ▶).

Experimental

Crystal data

[Co(C7H7N2O4)2(H2O)2]·3H2O M = 515.30 Triclinic, a = 7.1615 (14) Å b = 8.8729 (18) Å c = 9.3815 (19) Å α = 66.06 (3)° β = 88.66 (3)° γ = 70.97 (3)° V = 511.0 (3) Å3 Z = 1 Mo Kα radiation μ = 0.92 mm−1 T = 293 K 0.20 × 0.18 × 0.15 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.781, T max = 0.781 5086 measured reflections 2319 independent reflections 1578 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.102 S = 1.01 2319 reflections 149 parameters 5 restraints H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.73 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812008902/xu5468sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008902/xu5468Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H7N2O4)2(H2O)2]·3H2OZ = 1
Mr = 515.30F(000) = 267
Triclinic, P1Dx = 1.675 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1615 (14) ÅCell parameters from 7174 reflections
b = 8.8729 (18) Åθ = 2.4–28.4°
c = 9.3815 (19) ŵ = 0.92 mm1
α = 66.06 (3)°T = 293 K
β = 88.66 (3)°Block, red
γ = 70.97 (3)°0.20 × 0.18 × 0.15 mm
V = 511.0 (3) Å3
Bruker SMART APEXII diffractometer2319 independent reflections
Radiation source: fine-focus sealed tube1578 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −8→9
Tmin = 0.781, Tmax = 0.781k = −11→11
5086 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.020P)2 + 1.1P] where P = (Fo2 + 2Fc2)/3
2319 reflections(Δ/σ)max < 0.001
149 parametersΔρmax = 0.59 e Å3
5 restraintsΔρmin = −0.73 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.00000.50000.02833 (18)
N10.2254 (4)0.2967 (3)0.7643 (3)0.0306 (6)
H10.17760.31830.84170.037*
N20.3637 (4)0.1497 (3)0.6265 (3)0.0265 (5)
O10.4459 (3)0.2642 (3)0.3267 (3)0.0350 (5)
O20.3296 (4)0.5449 (3)0.2860 (3)0.0446 (6)
O30.1803 (4)0.7116 (3)0.4415 (3)0.0431 (6)
H30.22240.64870.39110.065*
O40.0657 (4)0.6633 (3)0.6723 (3)0.0439 (6)
O1W0.7752 (3)−0.0183 (3)0.5820 (3)0.0461 (7)
H1W0.8718−0.11400.60440.069*
H2W0.81180.06890.56460.069*
C10.3196 (4)0.3266 (4)0.5348 (4)0.0264 (6)
C20.2335 (4)0.4198 (4)0.6198 (4)0.0276 (6)
C30.3052 (4)0.1352 (4)0.7653 (4)0.0287 (7)
C40.3683 (5)0.3806 (4)0.3732 (4)0.0304 (7)
C50.1529 (5)0.6106 (4)0.5789 (4)0.0322 (7)
C60.3153 (5)−0.0299 (4)0.9003 (4)0.0359 (7)
H6A0.2973−0.00900.99430.043*
H6B0.4462−0.11740.91660.043*
C70.1579 (7)−0.1010 (6)0.8754 (5)0.0565 (11)
H7A0.0285−0.01250.85370.085*
H7B0.1633−0.20300.96860.085*
H7C0.1827−0.13230.78830.085*
O2W0.1678 (5)0.3395 (5)0.0422 (4)0.0726 (10)
H3W0.26200.34800.08850.109*
H4W0.06940.43550.00840.109*0.50
H7W0.07300.33660.09830.109*0.50
O3W0.50000.50000.00000.282 (8)
H5W0.59350.4424−0.03520.423*0.50
H6W0.51550.44870.09980.423*0.50
U11U22U33U12U13U23
Co10.0327 (3)0.0212 (3)0.0335 (4)−0.0056 (2)0.0051 (3)−0.0167 (3)
N10.0328 (14)0.0297 (14)0.0347 (15)−0.0067 (11)0.0064 (12)−0.0222 (12)
N20.0278 (12)0.0202 (12)0.0323 (14)−0.0048 (10)0.0029 (11)−0.0143 (11)
O10.0459 (13)0.0260 (12)0.0322 (12)−0.0083 (10)0.0097 (11)−0.0149 (10)
O20.0673 (17)0.0246 (12)0.0383 (14)−0.0143 (12)0.0134 (13)−0.0113 (11)
O30.0565 (15)0.0228 (12)0.0521 (16)−0.0100 (11)0.0074 (13)−0.0207 (12)
O40.0479 (14)0.0309 (13)0.0554 (16)−0.0031 (11)0.0060 (12)−0.0289 (12)
O1W0.0354 (13)0.0282 (13)0.081 (2)−0.0065 (10)−0.0024 (13)−0.0316 (13)
C10.0268 (14)0.0211 (14)0.0332 (16)−0.0069 (12)0.0025 (13)−0.0144 (13)
C20.0261 (14)0.0222 (15)0.0346 (17)−0.0057 (12)0.0007 (13)−0.0141 (13)
C30.0279 (15)0.0267 (16)0.0335 (17)−0.0065 (12)0.0017 (14)−0.0168 (14)
C40.0305 (16)0.0252 (16)0.0348 (17)−0.0075 (13)0.0022 (14)−0.0136 (14)
C50.0310 (16)0.0248 (17)0.0439 (19)−0.0053 (13)−0.0010 (15)−0.0207 (16)
C60.0412 (18)0.0315 (17)0.0328 (17)−0.0113 (15)0.0043 (15)−0.0125 (15)
C70.071 (3)0.052 (3)0.051 (2)−0.034 (2)0.006 (2)−0.017 (2)
O2W0.0621 (19)0.105 (3)0.060 (2)−0.0130 (18)0.0094 (16)−0.057 (2)
O3W0.408 (19)0.198 (11)0.139 (9)−0.010 (11)0.100 (11)−0.052 (8)
Co1—O12.153 (2)O1W—H2W0.8499
Co1—O1i2.153 (2)C1—C21.371 (4)
Co1—O1Wi2.064 (2)C1—C41.464 (4)
Co1—O1W2.064 (2)C2—C51.481 (4)
Co1—N22.123 (2)C3—C61.478 (4)
Co1—N2i2.123 (2)C6—C71.523 (5)
N1—C31.355 (4)C6—H6A0.9700
N1—C21.367 (4)C6—H6B0.9700
N1—H10.8600C7—H7A0.9600
N2—C31.327 (4)C7—H7B0.9600
N2—C11.377 (4)C7—H7C0.9600
O1—C41.244 (3)O2W—H3W0.8500
O2—C41.284 (4)O2W—H4W0.8500
O3—C51.292 (4)O2W—H7W0.8500
O3—H30.8500O3W—H5W0.8500
O4—C51.222 (4)O3W—H6W0.8500
O1W—H1W0.8500
O1Wi—Co1—O1W180.0N1—C2—C1105.4 (3)
O1Wi—Co1—N290.68 (9)N1—C2—C5122.2 (3)
O1W—Co1—N289.32 (9)C1—C2—C5132.4 (3)
O1Wi—Co1—N2i89.32 (9)N2—C3—N1109.9 (3)
O1W—Co1—N2i90.68 (9)N2—C3—C6126.0 (3)
N2—Co1—N2i180.00 (9)N1—C3—C6124.1 (3)
O1Wi—Co1—O188.57 (10)O1—C4—O2122.9 (3)
O1W—Co1—O191.43 (10)O1—C4—C1118.1 (3)
N2—Co1—O178.28 (9)O2—C4—C1119.0 (3)
N2i—Co1—O1101.72 (9)O4—C5—O3124.3 (3)
O1Wi—Co1—O1i91.43 (10)O4—C5—C2120.1 (3)
O1W—Co1—O1i88.57 (10)O3—C5—C2115.7 (3)
N2—Co1—O1i101.72 (9)C3—C6—C7112.2 (3)
N2i—Co1—O1i78.28 (9)C3—C6—H6A109.2
O1—Co1—O1i180.0C7—C6—H6A109.2
C3—N1—C2108.7 (3)C3—C6—H6B109.2
C3—N1—H1125.6C7—C6—H6B109.2
C2—N1—H1125.6H6A—C6—H6B107.9
C3—N2—C1106.5 (2)C6—C7—H7A109.5
C3—N2—Co1142.7 (2)C6—C7—H7B109.5
C1—N2—Co1110.81 (19)H7A—C7—H7B109.5
C4—O1—Co1114.8 (2)C6—C7—H7C109.5
C5—O3—H3107.5H7A—C7—H7C109.5
Co1—O1W—H1W118.0H7B—C7—H7C109.5
Co1—O1W—H2W124.7H3W—O2W—H4W110.3
H1W—O1W—H2W113.4H3W—O2W—H7W109.4
C2—C1—N2109.5 (3)H4W—O2W—H7W66.5
C2—C1—C4132.4 (3)H5W—O3W—H6W109.4
N2—C1—C4118.0 (2)
O1Wi—Co1—N2—C391.3 (4)C4—C1—C2—N1179.5 (3)
O1W—Co1—N2—C3−88.7 (4)N2—C1—C2—C5−178.0 (3)
N2i—Co1—N2—C3−95 (100)C4—C1—C2—C51.8 (6)
O1—Co1—N2—C3179.7 (4)C1—N2—C3—N10.1 (3)
O1i—Co1—N2—C3−0.3 (4)Co1—N2—C3—N1179.4 (2)
O1Wi—Co1—N2—C1−89.5 (2)C1—N2—C3—C6177.5 (3)
O1W—Co1—N2—C190.5 (2)Co1—N2—C3—C6−3.2 (6)
N2i—Co1—N2—C184 (100)C2—N1—C3—N2−0.3 (3)
O1—Co1—N2—C1−1.06 (19)C2—N1—C3—C6−177.7 (3)
O1i—Co1—N2—C1178.94 (19)Co1—O1—C4—O2178.6 (2)
O1Wi—Co1—O1—C492.4 (2)Co1—O1—C4—C1−1.4 (4)
O1W—Co1—O1—C4−87.6 (2)C2—C1—C4—O1−179.3 (3)
N2—Co1—O1—C41.4 (2)N2—C1—C4—O10.4 (4)
N2i—Co1—O1—C4−178.6 (2)C2—C1—C4—O20.7 (5)
O1i—Co1—O1—C4−137 (100)N2—C1—C4—O2−179.5 (3)
C3—N2—C1—C20.1 (3)N1—C2—C5—O4−4.3 (5)
Co1—N2—C1—C2−179.5 (2)C1—C2—C5—O4173.2 (3)
C3—N2—C1—C4−179.7 (3)N1—C2—C5—O3176.3 (3)
Co1—N2—C1—C40.8 (3)C1—C2—C5—O3−6.3 (5)
C3—N1—C2—C10.3 (3)N2—C3—C6—C7−73.9 (4)
C3—N1—C2—C5178.3 (3)N1—C3—C6—C7103.1 (4)
N2—C1—C2—N1−0.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2Wii0.861.962.786 (4)160
O3—H3···O20.851.632.471 (3)171
O1W—H1W···O4iii0.851.862.708 (3)173
O1W—H2W···O3iv0.851.942.763 (3)161
O2W—H3W···O10.852.333.077 (4)147
O2W—H3W···O3W0.852.443.091 (3)134
O2W—H4W···O2Wv0.852.042.883 (6)172
O2W—H7W···O4vi0.852.353.120 (4)151
O3W—H5W···O2vii0.852.373.040 (2)136
O3W—H6W···O10.852.263.031 (2)151
O3W—H6W···O20.852.433.040 (2)129
Table 1

Selected bond lengths (Å)

Co1—O12.153 (2)
Co1—O1W2.064 (2)
Co1—N22.123 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2Wi0.861.962.786 (4)160
O3—H3⋯O20.851.632.471 (3)171
O1W—H1W⋯O4ii0.851.862.708 (3)173
O1W—H2W⋯O3iii0.851.942.763 (3)161
O2W—H3W⋯O10.852.333.077 (4)147
O2W—H3W⋯O3W0.852.443.091 (3)134
O2W—H4W⋯O2Wiv0.852.042.883 (6)172
O2W—H7W⋯O4v0.852.353.120 (4)151
O3W—H5W⋯O2vi0.852.373.040 (2)136
O3W—H6W⋯O10.852.263.031 (2)151
O3W—H6W⋯O20.852.433.040 (2)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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6.  Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)copper(II) N,N-dimethyl-formamide disolvate.

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