Literature DB >> 21754616

Diaqua-bis-(5-carb-oxy-2-ethyl-1H-imidazole-5-carboxyl-ato-κN,O)zinc trihydrate.

Gang Zhang1.   

Abstract

In the crystal structure of the title compound, [Zn(C(7)H(7)N(2)O(4))(2)(H(2)O)(2)]·3H(2)O, the Zn(II) ion, located an inversion center, is N,O-chelated by two 5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ate anions and further coordinated by two water mol-ecules in a distorted octa-hedral geometry. The carb-oxy group links with the carboxyl-ate group of the same ligand via an intra-molecular O-H⋯O hydrogen bond. An extensive inter-molecular N-H⋯O and O-H⋯O hydrogen-bonded network exists in the crystal structure. One disordered lattice water mol-ecule is half-occupied and is located close to an inversion center.

Entities:  

Year:  2011        PMID: 21754616      PMCID: PMC3120609          DOI: 10.1107/S160053681101676X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination polymers built from 2-ethyl-4,5-imidazole­dicarboxyl­ate, see: Li et al. (2011 ▶); Wang et al. (2008 ▶); Zhang et al. (2010 ▶).

Experimental

Crystal data

[Zn(C7H7N2O4)2(H2O)2]·3H2O M = 521.74 Triclinic, a = 7.229 (1) Å b = 8.8959 (12) Å c = 9.3541 (15) Å α = 65.769 (1)° β = 88.587 (2)° γ = 70.676 (1)° V = 513.31 (13) Å3 Z = 1 Mo Kα radiation μ = 1.27 mm−1 T = 298 K 0.24 × 0.22 × 0.21 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.750, T max = 0.776 2676 measured reflections 1774 independent reflections 1532 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.09 1774 reflections 152 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.71 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681101676X/xu5200sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681101676X/xu5200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H7N2O4)2(H2O)2]·3H2OZ = 1
Mr = 521.74F(000) = 270
Triclinic, P1Dx = 1.688 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.229 (1) ÅCell parameters from 1329 reflections
b = 8.8959 (12) Åθ = 2.4–26.5°
c = 9.3541 (15) ŵ = 1.27 mm1
α = 65.769 (1)°T = 298 K
β = 88.587 (2)°Block, colorless
γ = 70.676 (1)°0.24 × 0.22 × 0.21 mm
V = 513.31 (13) Å3
Bruker SMART 1000 CCD area-detector diffractometer1774 independent reflections
Radiation source: fine-focus sealed tube1532 reflections with I > 2σ(I)
graphiteRint = 0.015
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −8→8
Tmin = 0.750, Tmax = 0.776k = −8→10
2676 measured reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0572P)2 + 0.7163P] where P = (Fo2 + 2Fc2)/3
1774 reflections(Δ/σ)max = 0.001
152 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.50000.50000.50000.0323 (2)
N10.3641 (4)0.6476 (4)0.6256 (3)0.0279 (7)
N20.2272 (4)0.7940 (4)0.7637 (4)0.0323 (7)
H20.17980.81550.84130.039*
O10.4472 (4)0.7653 (3)0.3230 (3)0.0387 (6)
O20.3323 (5)1.0446 (4)0.2846 (3)0.0471 (8)
O30.1810 (4)1.2103 (3)0.4395 (3)0.0459 (7)
H30.24051.15010.39440.069*
O40.0686 (4)1.1604 (4)0.6715 (4)0.0461 (7)
O50.7784 (4)0.4784 (4)0.5890 (4)0.0511 (8)
H5C0.81090.56360.58480.061*
H5D0.88210.38720.61590.061*
O60.1656 (5)0.8359 (5)0.0415 (4)0.0734 (11)
H6E0.10630.83940.12120.088*
H6F0.17450.9376−0.00260.088*
O70.439 (3)0.987 (4)0.987 (3)0.169 (9)0.50
H7F0.46290.90371.07950.202*0.50
H7G0.51680.95160.92880.202*0.50
C10.3691 (5)0.8809 (5)0.3702 (4)0.0310 (8)
C20.3209 (5)0.8245 (4)0.5336 (4)0.0274 (8)
C30.2351 (5)0.9175 (5)0.6180 (4)0.0290 (8)
C40.1541 (6)1.1095 (5)0.5770 (5)0.0343 (9)
C50.3068 (5)0.6320 (5)0.7650 (4)0.0304 (8)
C60.3164 (6)0.4663 (5)0.9015 (5)0.0386 (9)
H6A0.29780.48740.99560.046*
H6B0.44660.37830.91880.046*
C70.1624 (8)0.3961 (7)0.8768 (6)0.0579 (13)
H7A0.18740.36490.78950.087*
H7B0.03360.48490.85440.087*
H7C0.16810.29380.97060.087*
U11U22U33U12U13U23
Zn10.0374 (4)0.0234 (3)0.0368 (4)−0.0042 (3)0.0041 (3)−0.0184 (3)
N10.0294 (16)0.0241 (15)0.0311 (16)−0.0060 (12)0.0031 (12)−0.0152 (13)
N20.0336 (17)0.0309 (17)0.0357 (17)−0.0051 (14)0.0058 (13)−0.0222 (14)
O10.0490 (17)0.0309 (14)0.0351 (15)−0.0090 (12)0.0111 (12)−0.0174 (12)
O20.072 (2)0.0276 (15)0.0381 (16)−0.0160 (14)0.0135 (15)−0.0120 (13)
O30.0598 (19)0.0240 (14)0.0548 (19)−0.0083 (13)0.0056 (15)−0.0226 (14)
O40.0492 (18)0.0328 (15)0.0566 (18)−0.0010 (13)0.0059 (14)−0.0298 (14)
O50.0344 (16)0.0329 (16)0.090 (2)−0.0026 (12)−0.0071 (15)−0.0364 (17)
O60.073 (2)0.095 (3)0.055 (2)−0.014 (2)0.0122 (18)−0.047 (2)
O70.15 (2)0.154 (14)0.125 (11)−0.022 (16)0.017 (16)−0.013 (10)
C10.034 (2)0.0264 (19)0.034 (2)−0.0091 (16)0.0034 (16)−0.0152 (16)
C20.0266 (18)0.0230 (18)0.0333 (19)−0.0067 (14)−0.0006 (14)−0.0139 (15)
C30.0283 (19)0.0248 (18)0.0352 (19)−0.0064 (15)0.0006 (15)−0.0162 (16)
C40.032 (2)0.0264 (19)0.046 (2)−0.0056 (16)−0.0028 (17)−0.0206 (19)
C50.0291 (19)0.0295 (19)0.034 (2)−0.0064 (15)0.0017 (15)−0.0170 (16)
C60.045 (2)0.033 (2)0.033 (2)−0.0097 (18)0.0042 (18)−0.0130 (17)
C70.069 (3)0.058 (3)0.048 (3)−0.034 (3)0.004 (2)−0.014 (2)
Zn1—N12.104 (3)O5—H5D0.8499
Zn1—N1i2.104 (3)O6—H6E0.8578
Zn1—O12.164 (3)O6—H6F0.8502
Zn1—O1i2.164 (3)O7—O7ii1.05 (3)
Zn1—O52.116 (3)O7—H7F0.8500
Zn1—O5i2.116 (3)O7—H7G0.8500
N1—C51.324 (5)C1—C21.473 (5)
N1—C21.375 (4)C2—C31.366 (5)
N2—C51.358 (5)C3—C41.490 (5)
N2—C31.369 (5)C5—C61.483 (5)
N2—H20.8600C6—C71.509 (6)
O1—C11.243 (4)C6—H6A0.9700
O2—C11.277 (4)C6—H6B0.9700
O3—C41.286 (5)C7—H7A0.9600
O3—H30.8200C7—H7B0.9600
O4—C41.218 (5)C7—H7C0.9600
O5—H5C0.8501
N1—Zn1—N1i180.0H7F—O7—H7G108.8
N1—Zn1—O588.97 (11)O1—C1—O2123.1 (3)
N1i—Zn1—O591.03 (11)O1—C1—C2118.0 (3)
N1—Zn1—O5i91.03 (11)O2—C1—C2118.9 (3)
N1i—Zn1—O5i88.97 (11)C3—C2—N1109.7 (3)
O5—Zn1—O5i180.00 (16)C3—C2—C1131.9 (3)
N1—Zn1—O178.99 (10)N1—C2—C1118.5 (3)
N1i—Zn1—O1101.01 (10)C2—C3—N2105.4 (3)
O5—Zn1—O191.97 (11)C2—C3—C4132.7 (4)
O5i—Zn1—O188.03 (11)N2—C3—C4121.8 (3)
N1—Zn1—O1i101.01 (10)O4—C4—O3124.9 (4)
N1i—Zn1—O1i78.99 (10)O4—C4—C3119.8 (4)
O5—Zn1—O1i88.03 (11)O3—C4—C3115.4 (3)
O5i—Zn1—O1i91.97 (11)N1—C5—N2109.7 (3)
O1—Zn1—O1i180.00 (11)N1—C5—C6126.4 (3)
C5—N1—C2106.7 (3)N2—C5—C6123.8 (3)
C5—N1—Zn1142.7 (3)C5—C6—C7112.4 (3)
C2—N1—Zn1110.7 (2)C5—C6—H6A109.1
C5—N2—C3108.6 (3)C7—C6—H6A109.1
C5—N2—H2125.7C5—C6—H6B109.1
C3—N2—H2125.7C7—C6—H6B109.1
C1—O1—Zn1113.8 (2)H6A—C6—H6B107.9
C4—O3—H3109.5C6—C7—H7A109.5
Zn1—O5—H5C125.6C6—C7—H7B109.5
Zn1—O5—H5D124.4H7A—C7—H7B109.5
H5C—O5—H5D108.7C6—C7—H7C109.5
H6E—O6—H6F102.5H7A—C7—H7C109.5
O7ii—O7—H7F88.8H7B—C7—H7C109.5
O7ii—O7—H7G79.9
N1i—Zn1—N1—C555 (100)O2—C1—C2—C31.8 (6)
O5—Zn1—N1—C5−87.4 (4)O1—C1—C2—N1−0.1 (5)
O5i—Zn1—N1—C592.6 (4)O2—C1—C2—N1−178.9 (3)
O1—Zn1—N1—C5−179.6 (4)N1—C2—C3—N20.2 (4)
O1i—Zn1—N1—C50.4 (4)C1—C2—C3—N2179.6 (4)
N1i—Zn1—N1—C2−127 (100)N1—C2—C3—C4−177.8 (4)
O5—Zn1—N1—C290.9 (2)C1—C2—C3—C41.5 (7)
O5i—Zn1—N1—C2−89.1 (2)C5—N2—C3—C20.0 (4)
O1—Zn1—N1—C2−1.3 (2)C5—N2—C3—C4178.3 (3)
O1i—Zn1—N1—C2178.7 (2)C2—C3—C4—O4173.7 (4)
N1—Zn1—O1—C11.4 (3)N2—C3—C4—O4−4.1 (5)
N1i—Zn1—O1—C1−178.6 (3)C2—C3—C4—O3−5.9 (6)
O5—Zn1—O1—C1−87.2 (3)N2—C3—C4—O3176.3 (3)
O5i—Zn1—O1—C192.8 (3)C2—N1—C5—N20.4 (4)
O1i—Zn1—O1—C1168 (100)Zn1—N1—C5—N2178.7 (3)
Zn1—O1—C1—O2177.7 (3)C2—N1—C5—C6177.6 (3)
Zn1—O1—C1—C2−1.1 (4)Zn1—N1—C5—C6−4.1 (6)
C5—N1—C2—C3−0.4 (4)C3—N2—C5—N1−0.3 (4)
Zn1—N1—C2—C3−179.3 (2)C3—N2—C5—C6−177.5 (3)
C5—N1—C2—C1−179.8 (3)N1—C5—C6—C7−73.4 (5)
Zn1—N1—C2—C11.3 (4)N2—C5—C6—C7103.4 (4)
O1—C1—C2—C3−179.4 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O6iii0.861.952.778 (4)161
O3—H3···O20.821.652.465 (4)172
O5—H5C···O3iv0.851.952.785 (4)167
O5—H5D···O4v0.851.882.713 (4)166
O6—H6E···O4vi0.862.293.145 (5)175
O6—H6F···O7vii0.852.092.664 (17)125
O7—H7F···O1iii0.852.122.93 (3)160
O7—H7G···O2iv0.852.243.06 (3)160
Table 1

Selected bond lengths (Å)

Zn1—N12.104 (3)
Zn1—O12.164 (3)
Zn1—O52.116 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O6i0.861.952.778 (4)161
O3—H3⋯O20.821.652.465 (4)172
O5—H5C⋯O3ii0.851.952.785 (4)167
O5—H5D⋯O4iii0.851.882.713 (4)166
O6—H6E⋯O4iv0.862.293.145 (5)175
O6—H6F⋯O7v0.852.092.664 (17)125
O7—H7F⋯O1i0.852.122.93 (3)160
O7—H7G⋯O2ii0.852.243.06 (3)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  Four novel frameworks built by imidazole-based dicarboxylate ligands: hydro(solvo)thermal synthesis, crystal structures, and properties.

Authors:  Fuwei Zhang; Zifeng Li; Tiezhu Ge; Hongchang Yao; Gang Li; Huijie Lu; Yanyan Zhu
Journal:  Inorg Chem       Date:  2010-04-19       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[[[diaqua-sodium]-μ(3)-5-carb-oxy-2-ethyl-1H-imidazole-4-carboxyl-ato-κN,O:O:O] monohydrate].

Authors:  Shi-Jie Li; Xiao-Tian Ma; Wen-Dong Song; Xiao-Fei Li; Juan-Hua Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-02
  3 in total

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