Literature DB >> 21495701

Transverse conductance of DNA nucleotides in a graphene nanogap from first principles.

Jariyanee Prasongkit1, Anton Grigoriev, Biswarup Pathak, Rajeev Ahuja, Ralph H Scheicher.   

Abstract

The fabrication of nanopores in atomically thin graphene has recently been achieved, and translocation of DNA has been demonstrated. Taken together with an earlier proposal to use graphene nanogaps for the purpose of DNA sequencing, this approach can resolve the technical problem of achieving single-base resolution in electronic nucleobase detection. We have theoretically evaluated the performance of a graphene nanogap setup for the purpose of whole-genome sequencing, by employing density functional theory and the nonequilibrium Green's function method to investigate the transverse conductance properties of nucleotides inside the gap. In particular, we determined the electrical tunneling current variation at finite bias due to changes in the nucleotides orientation and lateral position. Although the resulting tunneling current is found to fluctuate over several orders of magnitude, a distinction between the four DNA bases appears possible, thus ranking the approach promising for rapid whole-genome sequencing applications.

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Year:  2011        PMID: 21495701     DOI: 10.1021/nl200147x

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  25 in total

1.  Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes.

Authors:  Bala Murali Venkatesan; David Estrada; Shouvik Banerjee; Xiaozhong Jin; Vincent E Dorgan; Myung-Ho Bae; Narayana R Aluru; Eric Pop; Rashid Bashir
Journal:  ACS Nano       Date:  2011-12-23       Impact factor: 15.881

2.  DNA base-specific modulation of microampere transverse edge currents through a metallic graphene nanoribbon with a nanopore.

Authors:  Kamal K Saha; Marija Drndić; Branislav K Nikolić
Journal:  Nano Lett       Date:  2011-12-15       Impact factor: 11.189

Review 3.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

Review 4.  Nanopore sensors for nucleic acid analysis.

Authors:  Bala Murali Venkatesan; Rashid Bashir
Journal:  Nat Nanotechnol       Date:  2011-09-18       Impact factor: 39.213

5.  Computational investigation of DNA detection using graphene nanopores.

Authors:  Chaitanya Sathe; Xueqing Zou; Jean-Pierre Leburton; Klaus Schulten
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

6.  Assessing graphene nanopores for sequencing DNA.

Authors:  David B Wells; Maxim Belkin; Jeffrey Comer; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2012-07-17       Impact factor: 11.189

7.  Surface modification of graphene nanopores for protein translocation.

Authors:  Y P Shan; P B Tiwari; P Krishnakumar; I Vlassiouk; W Z Li; X W Wang; Y Darici; S M Lindsay; H D Wang; S Smirnov; J He
Journal:  Nanotechnology       Date:  2013-11-14       Impact factor: 3.874

8.  Solid-State and Biological Nanopore for Real-Time Sensing of Single Chemical and Sequencing of DNA.

Authors:  Farzin Haque; Jinghong Li; Hai-Chen Wu; Xing-Jie Liang; Peixuan Guo
Journal:  Nano Today       Date:  2013-02       Impact factor: 20.722

9.  Molecular Transport across the Ionic Liquid-Aqueous Electrolyte Interface in a MoS2 Nanopore.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  ACS Appl Mater Interfaces       Date:  2020-05-26       Impact factor: 9.229

10.  Graphene quantum point contact transistor for DNA sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

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