Literature DB >> 21476590

Dynamics of completely unfolded and native proteins through solid-state nanopores as a function of electric driving force.

Abdelghani Oukhaled1, Benjamin Cressiot, Laurent Bacri, Manuela Pastoriza-Gallego, Jean-Michel Betton, Eric Bourhis, Ralf Jede, Jacques Gierak, Loïc Auvray, Juan Pelta.   

Abstract

We report experimentally the dynamic properties of the entry and transport of unfolded and native proteins through a solid-state nanopore as a function of applied voltage, and we discuss the experimental data obtained as compared to theory. We show an exponential increase in the event frequency of current blockades and an exponential decrease in transport times as a function of the electric driving force. The normalized current blockage ratio remains constant or decreases for folded or unfolded proteins, respectively, as a function of the transmembrane potential. The unfolded protein is stretched under the electric driving force. The dwell time of native compact proteins in the pore is almost 1 order of magnitude longer than that of unfolded proteins, and the event frequency for both protein conformations is low. We discuss the possible phenomena hindering the transport of proteins through the pores, which could explain these anomalous dynamics, in particular, electro-osmotic counterflow and protein adsorption on the nanopore wall.

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Year:  2011        PMID: 21476590     DOI: 10.1021/nn1034795

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  45 in total

1.  Using a nanopore for single molecule detection and single cell transfection.

Authors:  Edward M Nelson; Volker Kurz; Jiwook Shim; Winston Timp; Gregory Timp
Journal:  Analyst       Date:  2012-05-29       Impact factor: 4.616

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Authors:  Zhouxiang Ji; Shaoying Wang; Zhengyi Zhao; Zhi Zhou; Farzin Haque; Peixuan Guo
Journal:  Small       Date:  2016-07-20       Impact factor: 13.281

3.  Translocation of a heterogeneous polymer.

Authors:  Stephen Mirigian; Yanbo Wang; Murugappan Muthukumar
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

4.  Electrostatic Control of Polymer Translocation Speed through α‑Hemolysin Protein Pore.

Authors:  Byoung-Jin Jeon; Murugappan Muthukumar
Journal:  Macromolecules       Date:  2016-11-22       Impact factor: 5.985

5.  Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores.

Authors:  Iftach Nir; Diana Huttner; Amit Meller
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

6.  Communication: Charge, diffusion, and mobility of proteins through nanopores.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2014-08-28       Impact factor: 3.488

7.  High-bandwidth protein analysis using solid-state nanopores.

Authors:  Joseph Larkin; Robert Y Henley; Murugappan Muthukumar; Jacob K Rosenstein; Meni Wanunu
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

8.  Polymer capture by α-hemolysin pore upon salt concentration gradient.

Authors:  Byoung-jin Jeon; Murugappan Muthukumar
Journal:  J Chem Phys       Date:  2014-01-07       Impact factor: 3.488

9.  MOSAIC: A Modular Single-Molecule Analysis Interface for Decoding Multistate Nanopore Data.

Authors:  Jacob H Forstater; Kyle Briggs; Joseph W F Robertson; Jessica Ettedgui; Olivier Marie-Rose; Canute Vaz; John J Kasianowicz; Vincent Tabard-Cossa; Arvind Balijepalli
Journal:  Anal Chem       Date:  2016-11-15       Impact factor: 6.986

10.  Fast translocation of proteins through solid state nanopores.

Authors:  Calin Plesa; Stefan W Kowalczyk; Ruben Zinsmeester; Alexander Y Grosberg; Yitzhak Rabin; Cees Dekker
Journal:  Nano Lett       Date:  2013-01-29       Impact factor: 11.189

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