Literature DB >> 23975776

Membrane protein structure determination: back to the membrane.

Yong Yao1, Yi Ding, Ye Tian, Stanley J Opella, Francesca M Marassi.   

Abstract

NMR spectroscopy enables the structures of membrane proteins to be determined in the native-like environment of the phospholipid bilayer membrane. This chapter outlines the methods for membrane protein structural studies using solid-state NMR spectroscopy with samples of membrane proteins incorporated in proteoliposomes or planar lipid bilayers. The methods for protein expression and purification, sample preparation, and NMR experiments are described and illustrated with examples from OmpX and Ail, two bacterial outer membrane proteins that function in bacterial virulence.

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Year:  2013        PMID: 23975776      PMCID: PMC4012560          DOI: 10.1007/978-1-62703-583-5_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  82 in total

1.  Structural fitting of PISEMA spectra of aligned proteins.

Authors:  Alexander A Nevzorov; Stanley J Opella
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

Review 2.  Influence of solubilizing environments on membrane protein structures.

Authors:  Timothy A Cross; Mukesh Sharma; Myunggi Yi; Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2010-08-18       Impact factor: 13.807

3.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

Authors:  Dabeiba Marulanda; Maria Luisa Tasayco; Ann McDermott; Marcela Cataldi; Vilma Arriaran; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

4.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

Review 5.  Macromolecular modeling with rosetta.

Authors:  Rhiju Das; David Baker
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 6.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

7.  Expression, refolding, and initial structural characterization of the Y. pestis Ail outer membrane protein in lipids.

Authors:  Leigh A Plesniak; Radhakrishnan Mahalakshmi; Candace Rypien; Yuan Yang; Jasmina Racic; Francesca M Marassi
Journal:  Biochim Biophys Acta       Date:  2010-09-29

8.  Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching.

Authors:  Marcelo J Berardi; William M Shih; Stephen C Harrison; James J Chou
Journal:  Nature       Date:  2011-07-24       Impact factor: 49.962

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Authors:  David S Wishart; David Arndt; Mark Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

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  3 in total

1.  The dynamics of the G protein-coupled neuropeptide Y2 receptor in monounsaturated membranes investigated by solid-state NMR spectroscopy.

Authors:  Lars Thomas; Julian Kahr; Peter Schmidt; Ulrike Krug; Holger A Scheidt; Daniel Huster
Journal:  J Biomol NMR       Date:  2015-01-06       Impact factor: 2.835

2.  Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-08-28       Impact factor: 2.835

3.  High resolution solid-state NMR spectroscopy of the Yersinia pestis outer membrane protein Ail in lipid membranes.

Authors:  Yong Yao; Samit Kumar Dutta; Sang Ho Park; Ratan Rai; L Miya Fujimoto; Andrey A Bobkov; Stanley J Opella; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2017-02-26       Impact factor: 2.835

  3 in total

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