Literature DB >> 21424911

Using artificial systems to explore the ecology and evolution of symbioses.

Babak Momeni1, Chi-Chun Chen, Kristina L Hillesland, Adam Waite, Wenying Shou.   

Abstract

The web of life is weaved from diverse symbiotic interactions between species. Symbioses vary from antagonistic interactions such as competition and predation to beneficial interactions such as mutualism. What are the bases for the origin and persistence of symbiosis? What affects the ecology and evolution of symbioses? How do symbiotic interactions generate ecological patterns? How do symbiotic partners evolve and coevolve? Many of these questions are difficult to address in natural systems. Artificial systems, from abstract to living, have been constructed to capture essential features of natural symbioses and to address these key questions. With reduced complexity and increased controllability, artificial systems can serve as useful models for natural systems. We review how artificial systems have contributed to our understanding of symbioses.

Mesh:

Year:  2011        PMID: 21424911     DOI: 10.1007/s00018-011-0649-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  117 in total

1.  Long-Term Experimental Evolution in Escherichia coli. VIII. Dynamics of a Balanced Polymorphism.

Authors:  Daniel E Rozen; Richard E Lenski
Journal:  Am Nat       Date:  2000-01       Impact factor: 3.926

2.  At cross purposes.

Authors:  D M Wilkinson
Journal:  Nature       Date:  2001-08-02       Impact factor: 49.962

3.  Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite.

Authors:  Rebecca D Schulte; Carsten Makus; Barbara Hasert; Nico K Michiels; Hinrich Schulenburg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

4.  Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'.

Authors:  Benjamin Kerr; Claudia Neuhauser; Brendan J M Bohannan; Antony M Dean
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

5.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

6.  Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli.

Authors:  D S Treves; S Manning; J Adams
Journal:  Mol Biol Evol       Date:  1998-07       Impact factor: 16.240

7.  Legumes regulate Rhizobium bacteroid development and persistence by the supply of branched-chain amino acids.

Authors:  J Prell; J P White; A Bourdes; S Bunnewell; R J Bongaerts; P S Poole
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-13       Impact factor: 11.205

8.  Novel cooperation experimentally evolved between species.

Authors:  William Harcombe
Journal:  Evolution       Date:  2010-01-21       Impact factor: 3.694

9.  Microbial communication, cooperation and cheating: quorum sensing drives the evolution of cooperation in bacteria.

Authors:  Tamás Czárán; Rolf F Hoekstra
Journal:  PLoS One       Date:  2009-08-17       Impact factor: 3.240

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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  31 in total

Review 1.  Engineering microbial systems to explore ecological and evolutionary dynamics.

Authors:  Yu Tanouchi; Robert P Smith; Lingchong You
Journal:  Curr Opin Biotechnol       Date:  2012-02-04       Impact factor: 9.740

2.  Plant-fungal ecology. Niche engineering demonstrates a latent capacity for fungal-algal mutualism.

Authors:  Erik F Y Hom; Andrew W Murray
Journal:  Science       Date:  2014-07-04       Impact factor: 47.728

3.  Adaptation to a new environment allows cooperators to purge cheaters stochastically.

Authors:  Adam James Waite; Wenying Shou
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

Review 4.  Co-culture systems and technologies: taking synthetic biology to the next level.

Authors:  Lisa Goers; Paul Freemont; Karen M Polizzi
Journal:  J R Soc Interface       Date:  2014-07-06       Impact factor: 4.118

Review 5.  Synthetic transitions: towards a new synthesis.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

6.  Microbial mutualism dynamics governed by dose-dependent toxicity of cross-fed nutrients.

Authors:  Breah LaSarre; Alexandra L McCully; Jay T Lennon; James B McKinlay
Journal:  ISME J       Date:  2016-11-29       Impact factor: 10.302

7.  Experimental evolution of nodule intracellular infection in legume symbionts.

Authors:  Su Hua Guan; Carine Gris; Stéphane Cruveiller; Cécile Pouzet; Lena Tasse; Aurélie Leru; Aline Maillard; Claudine Médigue; Jacques Batut; Catherine Masson-Boivin; Delphine Capela
Journal:  ISME J       Date:  2013-02-21       Impact factor: 10.302

8.  A Combinatorial Algorithm for Microbial Consortia Synthetic Design.

Authors:  Alice Julien-Laferrière; Laurent Bulteau; Delphine Parrot; Alberto Marchetti-Spaccamela; Leen Stougie; Susana Vinga; Arnaud Mary; Marie-France Sagot
Journal:  Sci Rep       Date:  2016-07-04       Impact factor: 4.379

9.  Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community.

Authors:  Ryan K Fritts; Jordan T Bird; Megan G Behringer; Anna Lipzen; Joel Martin; Michael Lynch; James B McKinlay
Journal:  ISME J       Date:  2020-08-12       Impact factor: 10.302

10.  High-throughput quantification of microbial birth and death dynamics using fluorescence microscopy.

Authors:  Samuel F M Hart; David Skelding; Adam J Waite; Justin C Burton; Wenying Shou
Journal:  Quant Biol       Date:  2019-01-04
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