Literature DB >> 27431516

Synthetic transitions: towards a new synthesis.

Ricard Solé1.   

Abstract

The evolution of life in our biosphere has been marked by several major innovations. Such major complexity shifts include the origin of cells, genetic codes or multicellularity to the emergence of non-genetic information, language or even consciousness. Understanding the nature and conditions for their rise and success is a major challenge for evolutionary biology. Along with data analysis, phylogenetic studies and dedicated experimental work, theoretical and computational studies are an essential part of this exploration. With the rise of synthetic biology, evolutionary robotics, artificial life and advanced simulations, novel perspectives to these problems have led to a rather interesting scenario, where not only the major transitions can be studied or even reproduced, but even new ones might be potentially identified. In both cases, transitions can be understood in terms of phase transitions, as defined in physics. Such mapping (if correct) would help in defining a general framework to establish a theory of major transitions, both natural and artificial. Here, we review some advances made at the crossroads between statistical physics, artificial life, synthetic biology and evolutionary robotics.This article is part of the themed issue 'The major synthetic evolutionary transitions'.
© 2016 The Author(s).

Keywords:  artificial life; evolutionary robotics; major transitions; phase transitions; synthetic biology

Mesh:

Year:  2016        PMID: 27431516      PMCID: PMC4958932          DOI: 10.1098/rstb.2015.0438

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  182 in total

Review 1.  Rewiring the keyboard: evolvability of the genetic code.

Authors:  R D Knight; S J Freeland; L F Landweber
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

Review 2.  Molecular switches--the ON and OFF of bacterial phase variation.

Authors:  I R Henderson; P Owen; J P Nataro
Journal:  Mol Microbiol       Date:  1999-09       Impact factor: 3.501

3.  Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation.

Authors:  P Hogeweg
Journal:  J Theor Biol       Date:  2000-04-21       Impact factor: 2.691

4.  The emergence and maintenance of diversity: insights from experimental bacterial populations.

Authors: 
Journal:  Trends Ecol Evol       Date:  2000-06       Impact factor: 17.712

Review 5.  Chance and necessity: the evolution of morphological complexity and diversity.

Authors:  S B Carroll
Journal:  Nature       Date:  2001-02-22       Impact factor: 49.962

6.  An error limit for the evolution of language.

Authors:  M A Nowak; D C Krakauer; A Dress
Journal:  Proc Biol Sci       Date:  1999-10-22       Impact factor: 5.349

7.  Bellagio conference and book. Symbiosis as Source of Evolutionary Innovation: Speciation and Morphogenesis. Conference--June 25-30, 1989, Bellagio Conference Center, Italy.

Authors:  L Margulis; R Fester
Journal:  Symbiosis       Date:  1991       Impact factor: 2.268

8.  Phase transition between disordered and ordered foraging in Pharaoh's ants.

Authors:  M Beekman; D J Sumpter; F L Ratnieks
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-07       Impact factor: 11.205

9.  The evolutionary dynamics of grammar acquisition.

Authors:  N L Komarova; P Niyogi; M A Nowak
Journal:  J Theor Biol       Date:  2001-03-07       Impact factor: 2.691

10.  A model for the emergence of cooperation, interdependence, and structure in evolving networks.

Authors:  S Jain; S Krishna
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

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  9 in total

1.  Zipf's Law, unbounded complexity and open-ended evolution.

Authors:  Bernat Corominas-Murtra; Luís F Seoane; Ricard Solé
Journal:  J R Soc Interface       Date:  2018-12-21       Impact factor: 4.118

2.  Synthetic associative learning in engineered multicellular consortia.

Authors:  Javier Macia; Blai Vidiella; Ricard V Solé
Journal:  J R Soc Interface       Date:  2017-04       Impact factor: 4.118

3.  The major synthetic evolutionary transitions.

Authors:  Ricard Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

4.  Unicellular-multicellular evolutionary branching driven by resource limitations.

Authors:  Adriano Bonforti; Ricard Solé
Journal:  J R Soc Interface       Date:  2022-06-01       Impact factor: 4.293

5.  Evolution of Brains and Computers: The Roads Not Taken.

Authors:  Ricard Solé; Luís F Seoane
Journal:  Entropy (Basel)       Date:  2022-05-09       Impact factor: 2.738

6.  Spatial dynamics of synthetic microbial mutualists and their parasites.

Authors:  Daniel R Amor; Raúl Montañez; Salva Duran-Nebreda; Ricard Solé
Journal:  PLoS Comput Biol       Date:  2017-08-21       Impact factor: 4.475

7.  Nonequilibrium Entropic Bounds for Darwinian Replicators.

Authors:  Jordi Piñero; Ricard Solé
Journal:  Entropy (Basel)       Date:  2018-01-31       Impact factor: 2.524

Review 8.  Novel synthetic biology approaches for developmental systems.

Authors:  Christine Ho; Leonardo Morsut
Journal:  Stem Cell Reports       Date:  2021-05-11       Impact factor: 7.765

Review 9.  Behaviorist approaches to investigating memory and learning: A primer for synthetic biology and bioengineering.

Authors:  Charles I Abramson; Michael Levin
Journal:  Commun Integr Biol       Date:  2021-12-14
  9 in total

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