Literature DB >> 24829281

Co-culture systems and technologies: taking synthetic biology to the next level.

Lisa Goers1, Paul Freemont2, Karen M Polizzi3.   

Abstract

Co-culture techniques find myriad applications in biology for studying natural or synthetic interactions between cell populations. Such techniques are of great importance in synthetic biology, as multi-species cell consortia and other natural or synthetic ecology systems are widely seen to hold enormous potential for foundational research as well as novel industrial, medical and environmental applications with many proof-of-principle studies in recent years. What is needed for co-cultures to fulfil their potential? Cell-cell interactions in co-cultures are strongly influenced by the extracellular environment, which is determined by the experimental set-up, which therefore needs to be given careful consideration. An overview of existing experimental and theoretical co-culture set-ups in synthetic biology and adjacent fields is given here, and challenges and opportunities involved in such experiments are discussed. Greater focus on foundational technology developments for co-cultures is needed for many synthetic biology systems to realize their potential in both applications and answering biological questions.
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Keywords:  cell–cell interaction; co-culture; intercellular communication; microbial consortia; mixed cultures; synthetic biology

Mesh:

Year:  2014        PMID: 24829281      PMCID: PMC4032528          DOI: 10.1098/rsif.2014.0065

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  102 in total

1.  Diversity peaks at intermediate productivity in a laboratory microcosm.

Authors:  R Kassen; A Buckling; G Bell; P B Rainey
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

2.  Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.

Authors:  Benjamin Kerr; Margaret A Riley; Marcus W Feldman; Brendan J M Bohannan
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Towards synthetic microbial consortia for bioprocessing.

Authors:  Jasmine Shong; Manuel Rafael Jimenez Diaz; Cynthia H Collins
Journal:  Curr Opin Biotechnol       Date:  2012-03-01       Impact factor: 9.740

4.  Synthetic ecosystems based on airborne inter- and intrakingdom communication.

Authors:  Wilfried Weber; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

5.  A synthetic metabolite-based mammalian inter-cell signaling system.

Authors:  Wilfried Weber; Marco Schuetz; Nicolas Dénervaud; Martin Fussenegger
Journal:  Mol Biosyst       Date:  2009-04-28

6.  Using a co-culture microsystem for cell migration under fluid shear stress.

Authors:  Chia-Hsien Yeh; Shen-Hsing Tsai; Li-Wha Wu; Yu-Cheng Lin
Journal:  Lab Chip       Date:  2011-06-21       Impact factor: 6.799

7.  Development of a three-dimensional, all-human in vitro model of the blood-brain barrier using mono-, co-, and tri-cultivation Transwell models.

Authors:  Kathryn Hatherell; Pierre-Olivier Couraud; Ignacio A Romero; Babette Weksler; Geoffrey J Pilkington
Journal:  J Neurosci Methods       Date:  2011-05-14       Impact factor: 2.390

8.  Novel cooperation experimentally evolved between species.

Authors:  William Harcombe
Journal:  Evolution       Date:  2010-01-21       Impact factor: 3.694

9.  In Vivo Gene Expression Dynamics of Tumor-Targeted Bacteria.

Authors:  Tal Danino; Justin Lo; Arthur Prindle; Jeff Hasty; Sangeeta N Bhatia
Journal:  ACS Synth Biol       Date:  2012-09-21       Impact factor: 5.110

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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  104 in total

1.  Early Changes in Nutritional Conditions Affect Formation of Synthetic Mutualism Between Chlorella sorokiniana and the Bacterium Azospirillum brasilense.

Authors:  Oskar A Palacios; Blanca R Lopez; Yoav Bashan; Luz E de-Bashan
Journal:  Microb Ecol       Date:  2018-11-05       Impact factor: 4.552

2.  Motion sensing superpixels (MOSES) is a systematic computational framework to quantify and discover cellular motion phenotypes.

Authors:  Felix Y Zhou; Carlos Ruiz-Puig; Richard P Owen; Michael J White; Jens Rittscher; Xin Lu
Journal:  Elife       Date:  2019-02-26       Impact factor: 8.140

3.  Coculturing Bacteria Leads to Reduced Phenotypic Heterogeneities.

Authors:  Jasmine Heyse; Benjamin Buysschaert; Ruben Props; Peter Rubbens; Andre G Skirtach; Willem Waegeman; Nico Boon
Journal:  Appl Environ Microbiol       Date:  2019-04-04       Impact factor: 4.792

Review 4.  Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales.

Authors:  Regina L Wilpiszeski; Jayde A Aufrecht; Scott T Retterer; Matthew B Sullivan; David E Graham; Eric M Pierce; Olivier D Zablocki; Anthony V Palumbo; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

5.  Integration of mesenchymal stem cells into islet cell spheroids improves long-term viability, but not islet function.

Authors:  Sonia Rawal; S Janette Williams; Karthik Ramachandran; Lisa Stehno-Bittel
Journal:  Islets       Date:  2017-06-29       Impact factor: 2.694

6.  Impact of Astrocytes on the Injury Induced by In Vitro Ischemia.

Authors:  Cláudio Roque; Graça Baltazar
Journal:  Cell Mol Neurobiol       Date:  2017-03-17       Impact factor: 5.046

Review 7.  Organ-on-a-chip engineering: Toward bridging the gap between lab and industry.

Authors:  Qasem Ramadan; Mohammed Zourob
Journal:  Biomicrofluidics       Date:  2020-07-14       Impact factor: 2.800

Review 8.  Functional and Biomimetic Materials for Engineering of the Three-Dimensional Cell Microenvironment.

Authors:  Guoyou Huang; Fei Li; Xin Zhao; Yufei Ma; Yuhui Li; Min Lin; Guorui Jin; Tian Jian Lu; Guy M Genin; Feng Xu
Journal:  Chem Rev       Date:  2017-10-09       Impact factor: 60.622

9.  Polymeric scaffolds for three-dimensional culture of nerve cells: a model of peripheral nerve regeneration.

Authors:  Radamés Ayala-Caminero; Luis Pinzón-Herrera; Carol A Rivera Martinez; Jorge Almodovar
Journal:  MRS Commun       Date:  2017-10-03       Impact factor: 2.566

10.  Local interactions and self-organized spatial patterns stabilize microbial cross-feeding against cheaters.

Authors:  Simon Maccracken Stump; Evan Curtis Johnson; Christopher A Klausmeier
Journal:  J R Soc Interface       Date:  2018-03       Impact factor: 4.118

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