Literature DB >> 22310174

Engineering microbial systems to explore ecological and evolutionary dynamics.

Yu Tanouchi1, Robert P Smith, Lingchong You.   

Abstract

A major goal of biological research is to provide a mechanistic understanding of diverse biological processes. To this end, synthetic biology offers a powerful approach, whereby biological questions can be addressed in a well-defined framework. By constructing simple gene circuits, such studies have generated new insights into the design principles of gene regulatory networks. Recently, this strategy has been applied to analyze ecological and evolutionary questions, where population-level interactions are critical. Here, we highlight recent development of such systems and discuss how they were used to address problems in ecology and evolutionary biology. As illustrated by these examples, synthetic ecosystems provide a unique platform to study ecological and evolutionary phenomena that are challenging to study in their natural contexts.
Copyright © 2012. Published by Elsevier Ltd.

Entities:  

Mesh:

Year:  2012        PMID: 22310174      PMCID: PMC3356794          DOI: 10.1016/j.copbio.2012.01.006

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  46 in total

1.  Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.

Authors:  Benjamin Kerr; Margaret A Riley; Marcus W Feldman; Brendan J M Bohannan
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  The evolution of restraint in bacterial biofilms under nontransitive competition.

Authors:  Federico Prado; Benjamin Kerr
Journal:  Evolution       Date:  2007-11-26       Impact factor: 3.694

Review 3.  Engineering microbial consortia: a new frontier in synthetic biology.

Authors:  Katie Brenner; Lingchong You; Frances H Arnold
Journal:  Trends Biotechnol       Date:  2008-07-31       Impact factor: 19.536

4.  Simpson's paradox in a synthetic microbial system.

Authors:  John S Chuang; Olivier Rivoire; Stanislas Leibler
Journal:  Science       Date:  2009-01-09       Impact factor: 47.728

5.  The genetical evolution of social behaviour. I.

Authors:  W D Hamilton
Journal:  J Theor Biol       Date:  1964-07       Impact factor: 2.691

Review 6.  Bacterial iron sources: from siderophores to hemophores.

Authors:  Cécile Wandersman; Philippe Delepelaire
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 15.500

7.  The Prisoner's Dilemma and polymorphism in yeast SUC genes.

Authors:  Duncan Greig; Michael Travisano
Journal:  Proc Biol Sci       Date:  2004-02-07       Impact factor: 5.349

8.  A co-fermentation strategy to consume sugar mixtures effectively.

Authors:  Mark A Eiteman; Sarah A Lee; Elliot Altman
Journal:  J Biol Eng       Date:  2008-02-27       Impact factor: 4.355

9.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

View more
  21 in total

1.  Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria.

Authors:  Yangxiaolu Cao; Marc D Ryser; Stephen Payne; Bochong Li; Christopher V Rao; Lingchong You
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

2.  Timing between successive introduction events determines establishment success in bacteria with an Allee effect.

Authors:  Michael D Dressler; Josue Conde; Omar Tonsi Eldakar; Robert P Smith
Journal:  Proc Biol Sci       Date:  2019-05-15       Impact factor: 5.349

3.  Programmed Allee effect in bacteria causes a tradeoff between population spread and survival.

Authors:  Robert Smith; Cheemeng Tan; Jaydeep K Srimani; Anand Pai; Katherine A Riccione; Hao Song; Lingchong You
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

Review 4.  Co-culture systems and technologies: taking synthetic biology to the next level.

Authors:  Lisa Goers; Paul Freemont; Karen M Polizzi
Journal:  J R Soc Interface       Date:  2014-07-06       Impact factor: 4.118

Review 5.  Collective antibiotic tolerance: mechanisms, dynamics and intervention.

Authors:  Hannah R Meredith; Jaydeep K Srimani; Anna J Lee; Allison J Lopatkin; Lingchong You
Journal:  Nat Chem Biol       Date:  2015-02-17       Impact factor: 15.040

Review 6.  Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies.

Authors:  Yoann Besset-Manzoni; Laura Rieusset; Pierre Joly; Gilles Comte; Claire Prigent-Combaret
Journal:  Environ Sci Pollut Res Int       Date:  2018-01-08       Impact factor: 4.223

Review 7.  A synthetic biology approach to understanding cellular information processing.

Authors:  Katherine A Riccione; Robert P Smith; Anna J Lee; Lingchong You
Journal:  ACS Synth Biol       Date:  2012-09-21       Impact factor: 5.110

Review 8.  The microbiome and human cancer.

Authors:  Gregory D Sepich-Poore; Laurence Zitvogel; Ravid Straussman; Jeff Hasty; Jennifer A Wargo; Rob Knight
Journal:  Science       Date:  2021-03-26       Impact factor: 47.728

9.  Stochastic simulations of a synthetic bacteria-yeast ecosystem.

Authors:  Konstantinos Biliouris; David Babson; Claudia Schmidt-Dannert; Yiannis N Kaznessis
Journal:  BMC Syst Biol       Date:  2012-06-06

10.  Mobile genetic elements are involved in bacterial sociality.

Authors:  Tatiana Dimitriu; Dusan Misevic; Ariel B Lindner; François Taddei
Journal:  Mob Genet Elements       Date:  2015-02-04
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.