Literature DB >> 21411583

Loop-mediated isothermal amplification for rapid and reliable diagnosis of tuberculous meningitis.

Khushboo J Nagdev1, Rajpal S Kashyap, Manmohan M Parida, Rajkumar C Kapgate, Hemant J Purohit, Girdhar M Taori, Hatim F Daginawala.   

Abstract

Diagnosis of tuberculous meningitis (TBM) is often difficult. A reliable, simple, and rapid diagnostic test that can be performed in any standard laboratory could be helpful in TBM diagnosis. In this study, a loop-mediated isothermal amplification assay (LAMP) was evaluated to rapidly detect and diagnose TBM infection and was compared to the performance of nested PCR. Six specific primers were used to recognize the IS6110 genomic sequence from Mycobacterium tuberculosis, which included one forward outer primer, one reverse outer primer, two respective inner primers, and two loop primers. The optimum reaction temperature and time were 63°C and 60 min, respectively. Nested PCR was performed targeting the IS6110 region from M. tuberculosis using a commercial kit. The LAMP method yielded a sensitivity of 88.23% and a specificity of 80%, compared to the nested-PCR assay, which yielded a sensitivity of 52.9% and a specificity of 90% for TBM diagnosis. Comparative experiments showed that the LAMP assay is a rapid, sensitive, and specific method to detect TBM infection and that it is superior to the nested-PCR assay. LAMP is very simple, and it can be performed in any laboratory and in rural settings.

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Year:  2011        PMID: 21411583      PMCID: PMC3122663          DOI: 10.1128/JCM.00824-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  34 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

3.  Rapid diagnostic method for detection of mumps virus genome by loop-mediated isothermal amplification.

Authors:  Takao Okafuji; Naoko Yoshida; Motoko Fujino; Yoshie Motegi; Toshiaki Ihara; Yoshinori Ota; Tsugunori Notomi; Tetsuo Nakayama
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

4.  Role of IS6110 uniplex PCR in the diagnosis of tuberculous meningitis: experience at a tertiary neurocentre.

Authors:  W Rafi; M M Venkataswamy; S Nagarathna; P Satishchandra; A Chandramuki
Journal:  Int J Tuberc Lung Dis       Date:  2007-02       Impact factor: 2.373

5.  Dual-probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR.

Authors:  Takayuki Wada; Shinji Maeda; Aki Tamaru; Shigeyoshi Imai; Atsushi Hase; Kazuo Kobayashi
Journal:  J Clin Microbiol       Date:  2004-11       Impact factor: 5.948

6.  Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples.

Authors:  Tomotada Iwamoto; Toshiaki Sonobe; Kozaburo Hayashi
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

7.  Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus.

Authors:  Thi Cam Thai Hong; Quynh Le Mai; Duc Vuong Cuong; Manmohan Parida; Harumi Minekawa; Tsugunori Notomi; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

8.  Detection of four Plasmodium species by genus- and species-specific loop-mediated isothermal amplification for clinical diagnosis.

Authors:  Eun-Taek Han; Risa Watanabe; Jetsumon Sattabongkot; Benjawan Khuntirat; Jeeraphat Sirichaisinthop; Hideyuki Iriko; Ling Jin; Satoru Takeo; Takafumi Tsuboi
Journal:  J Clin Microbiol       Date:  2007-06-13       Impact factor: 5.948

9.  Evaluation of reverse transcription loop-mediated isothermal amplification in conjunction with ELISA-hybridization assay for molecular detection of Mycobacterium tuberculosis.

Authors:  Mei-Feng Lee; Yen-Hsu Chen; Chien-Fang Peng
Journal:  J Microbiol Methods       Date:  2008-10-27       Impact factor: 2.363

10.  Evaluation of the IS6110 PCR assay for the rapid diagnosis of tuberculous meningitis.

Authors:  Poonam S Deshpande; Rajpal S Kashyap; Sonali S Ramteke; Khushboo J Nagdev; Hemant J Purohit; Girdhar M Taori; Hatim F Daginawala
Journal:  Cerebrospinal Fluid Res       Date:  2007-11-02
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  21 in total

1.  Species-specific loop-mediated isothermal amplification (LAMP) assay for identification of tissue of cattle origin by targeting mitochondrial gene sequences.

Authors:  Sarita Kumari; Rajiv Ranjan Kumar; Sanjod Kumar Mendiratta; Deepak Kumar; Preeti Rana; Dhananjay Kumar; Jyoti Jawla
Journal:  3 Biotech       Date:  2019-02-05       Impact factor: 2.406

2.  Detection of microcystin-producing cyanobacteria in water samples using loop-mediated isothermal amplification targeting mcyB gene.

Authors:  Mohandass Ramya; Muthukrishnan Kayalvizhi; Gopalakrishnan Haripriya; Pasupathi Rathinasabapathi
Journal:  3 Biotech       Date:  2018-08-17       Impact factor: 2.406

3.  Reverse transcription loop-mediated isothermal amplification for rapid detection of the newly emerged poultry Flavivirus.

Authors:  Zhaolong Li; Shaoying Chen; Shao Wang; Shilong Chen; Fengqian Lin
Journal:  Folia Microbiol (Praha)       Date:  2012-11-15       Impact factor: 2.099

4.  A Systematic Review and Meta-analysis of the Diagnostic Accuracy of Nucleic Acid Amplification Tests for Tuberculous Meningitis.

Authors:  Ali Pormohammad; Mohammad Javad Nasiri; Timothy D McHugh; Seyed Mohammad Riahi; Nathan C Bahr
Journal:  J Clin Microbiol       Date:  2019-05-24       Impact factor: 5.948

Review 5.  Methods of rapid diagnosis for the etiology of meningitis in adults.

Authors:  Nathan C Bahr; David R Boulware
Journal:  Biomark Med       Date:  2014       Impact factor: 2.851

6.  Rapid detection of tomato leaf curl Bengaluru virus through loop mediated isothermal amplification assay.

Authors:  R Arutselvan; M Krishna Reddy; T Makeshkumar
Journal:  Virusdisease       Date:  2017-06-13

Review 7.  The lab without walls: a deployable approach to tropical infectious diseases.

Authors:  Timothy J J Inglis
Journal:  Am J Trop Med Hyg       Date:  2013-04       Impact factor: 2.345

8.  Comparative Diagnostic Utility of IS6110 PCR Assay in CSF and Peripheral Blood Samples of Tuberculous Meningitis Patients: A Pilot Study from Central India.

Authors:  Sonali D Manke; Aliabbas A Husain; Hatim F Daginawala; Lokendra K Singh; Rajpal S Kashyap
Journal:  J Clin Diagn Res       Date:  2017-04-01

9.  Rapid detection of wheat yellow mosaic virus by reverse transcription loop-mediated isothermal amplification.

Authors:  Zong-Ying Zhang; Xiao-Jun Liu; Da-Wei Li; Jia-Lin Yu; Cheng-Gui Han
Journal:  Virol J       Date:  2011-12-20       Impact factor: 4.099

Review 10.  Tuberculous Meningitis: Pathogenesis, Immune Responses, Diagnostic Challenges, and the Potential of Biomarker-Based Approaches.

Authors:  Charles M Manyelo; Regan S Solomons; Gerhard Walzl; Novel N Chegou
Journal:  J Clin Microbiol       Date:  2021-02-18       Impact factor: 5.948

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