Literature DB >> 12144774

Accelerated reaction by loop-mediated isothermal amplification using loop primers.

K Nagamine1, T Hase, T Notomi.   

Abstract

Loop-mediated isothermal amplification (LAMP) is a novel nucleic acid amplification method that amplifies DNA with high specificity, efficiency and rapidity under isothermal conditions using a set of four specially designed primers and a DNA polymerase with strand displacement activity. We have developed a method that accelerates the LAMP reaction by using additional primers, termed loop primers. Loop primers hybridize to the stem-loops, except for the loops that are hybridized by the inner primers, and prime strand displacement DNA synthesis. Although both inner and loop primers react via the loops, they do so by different mechanisms. The LAMP method presented here uses loop primers to achieve reaction times of less than half that of the original LAMP method. Since the total time of analysis including detection is less than 1h, this new method should facilitate genetic analysis, including genetic diagnosis in the clinical laboratory.

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Substances:

Year:  2002        PMID: 12144774     DOI: 10.1006/mcpr.2002.0415

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  444 in total

1.  Rapid and sensitive detection of Listeria monocytogenes by loop-mediated isothermal amplification.

Authors:  Meng-Jun Tang; Sheng Zhou; Xiao-Yan Zhang; Jun-Hua Pu; Qing-Lian Ge; Xiu-Jun Tang; Yu-Shi Gao
Journal:  Curr Microbiol       Date:  2011-09-21       Impact factor: 2.188

2.  Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus.

Authors:  Manmohan Parida; Guillermo Posadas; Shingo Inoue; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

3.  Sensitive and rapid detection of the new Delhi metallo-beta-lactamase gene by loop-mediated isothermal amplification.

Authors:  Wei Liu; Dayang Zou; Yan Li; Xuesong Wang; Xiang He; Xiao Wei; Changlin Shao; Xuelian Li; Wei Shang; Kaitao Yu; Dawei Liu; Yunmei Li; Jing Guo; Zhitao Yin; Jing Yuan
Journal:  J Clin Microbiol       Date:  2012-02-22       Impact factor: 5.948

4.  Rapid detection of Lassa virus by reverse transcription-loop-mediated isothermal amplification.

Authors:  Aiko Fukuma; Yohei Kurosaki; Yuko Morikawa; Allen Grolla; Heinz Feldmann; Jiro Yasuda
Journal:  Microbiol Immunol       Date:  2011-01       Impact factor: 1.955

5.  Development and application of loop-mediated isothermal amplification assays on rapid detection of various types of staphylococci strains.

Authors:  Zhenbo Xu; Lin Li; Jin Chu; Brian M Peters; Megan L Harris; Bing Li; Lei Shi; Mark E Shirtliff
Journal:  Food Res Int       Date:  2012-07-01       Impact factor: 6.475

6.  Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP.

Authors:  Eugenia M Khorosheva; Mikhail A Karymov; David A Selck; Rustem F Ismagilov
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

7.  A novel application of real-time RT-LAMP for body fluid identification: using HBB detection as the model.

Authors:  Chih-Wen Su; Chiao-Yun Li; James Chun-I Lee; Dar-Der Ji; Shu-Ying Li; Barbara Daniel; Denise Syndercombe-Court; Adrian Linacre; Hsing-Mei Hsieh
Journal:  Forensic Sci Med Pathol       Date:  2015-04-16       Impact factor: 2.007

8.  A loop-mediated isothermal amplification (LAMP) assay for Strongyloides stercoralis in stool that uses a visual detection method with SYTO-82 fluorescent dye.

Authors:  Matthew R Watts; Gregory James; Yasmin Sultana; Andrew N Ginn; Alexander C Outhred; Fanrong Kong; Jaco J Verweij; Jonathan R Iredell; Sharon C-A Chen; Rogan Lee
Journal:  Am J Trop Med Hyg       Date:  2013-12-09       Impact factor: 2.345

9.  Diagnostic tools for tackling febrile illness and enhancing patient management.

Authors:  Konstantinos Mitsakakis; Valérie D'Acremont; Sebastian Hin; Felix von Stetten; Roland Zengerle
Journal:  Microelectron Eng       Date:  2018-10-05       Impact factor: 2.523

10.  Mechanistic evaluation of the pros and cons of digital RT-LAMP for HIV-1 viral load quantification on a microfluidic device and improved efficiency via a two-step digital protocol.

Authors:  Bing Sun; Feng Shen; Stephanie E McCalla; Jason E Kreutz; Mikhail A Karymov; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2013-01-16       Impact factor: 6.986

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