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Literature DB >> 21405193

Note: On the universality of proximal radial distribution functions of proteins.

Bin Lin, B Montgomery Pettitt.

Abstract

Mesh：

Substances：
Proteins

Year: 2011 PMID： 21405193 PMCID： PMC3069986 DOI： 10.1063/1.3565035

Source DB: PubMed Journal: J Chem Phys ISSN： 0021-9606 Impact factor: 3.488

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18 in total

Review 1. Molecular dynamics simulations of biomolecules.

Authors: Martin Karplus; J Andrew McCammon
Journal: Nat Struct Biol Date: 2002-09

Review 2. Virtual screening of chemical libraries.

Authors: Brian K Shoichet
Journal: Nature Date: 2004-12-16 Impact factor: 49.962

3. On the mechanism of hydrophobic association of nanoscopic solutes.

Authors: Niharendu Choudhury; B Montgomery Pettitt
Journal: J Am Chem Soc Date: 2005-03-16 Impact factor: 15.419

4. Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.

Authors: Abhishek K Jha; Andres Colubri; Muhammad H Zaman; Shohei Koide; Tobin R Sosnick; Karl F Freed
Journal: Biochemistry Date: 2005-07-19 Impact factor: 3.162

Review 5. Crystallographic water sites from a theoretical perspective.

Authors: M Feig; B M Pettitt
Journal: Structure Date: 1998-11-15 Impact factor: 5.006

6. Canonical dynamics: Equilibrium phase-space distributions.

Authors:
Journal: Phys Rev A Gen Phys Date: 1985-03

7. Reconstructing the protein-water interface.

Authors: V A Makarov; B K Andrews; B M Pettitt
Journal: Biopolymers Date: 1998-06 Impact factor: 2.505

Review 8. Structure and dynamics of the water around myoglobin.

Authors: G N Phillips; B M Pettitt
Journal: Protein Sci Date: 1995-02 Impact factor: 6.725

9. A global model of the protein-solvent interface.

Authors: V Lounnas; B M Pettitt; G N Phillips
Journal: Biophys J Date: 1994-03 Impact factor: 4.033

10. Backbone additivity in the transfer model of protein solvation.

Authors: Char Y Hu; Hironori Kokubo; Gillian C Lynch; D Wayne Bolen; B Montgomery Pettitt
Journal: Protein Sci Date: 2010-05 Impact factor: 6.725

11 in total

1. Ionic strength independence of charge distributions in solvation of biomolecules.

Authors: J J Virtanen; T R Sosnick; K F Freed
Journal: J Chem Phys Date: 2014-12-14 Impact factor: 3.488

2. Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.

Authors: Shu-Ching Ou; B Montgomery Pettitt
Journal: J Chem Theory Comput Date: 2019-03-06 Impact factor: 6.006

3. Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation.

Authors: Utsab R Shrestha; Puneet Juneja; Qiu Zhang; Viswanathan Gurumoorthy; Jose M Borreguero; Volker Urban; Xiaolin Cheng; Sai Venkatesh Pingali; Jeremy C Smith; Hugh M O'Neill; Loukas Petridis
Journal: Proc Natl Acad Sci U S A Date: 2019-09-23 Impact factor: 11.205

4. Fast Calculations of Electrostatic Solvation Free Energy from Reconstructed Solvent Density using proximal Radial Distribution Functions.

Authors: Bin Lin; Ka-Yiu Wong; Char Hu; Hironori Kokubo; B Montgomery Pettitt
Journal: J Phys Chem Lett Date: 2011-06 Impact factor: 6.475