Literature DB >> 27095487

Solute-Solvent Energetics Based on Proximal Distribution Functions.

Shu-Ching Ou1, B Montgomery Pettitt1.   

Abstract

We consider the hydration structure and thermodynamic energetics of solutes in aqueous solution. On the basis of the dominant local correlation between the solvent and the chemical nature of the solute atoms, proximal distribution functions (pDF) can be used to quantitatively estimate the hydration pattern of the macromolecules. We extended this technique to study the solute-solvent energetics including the van der Waals terms representing excluded volume and tested the method with butane and propanol. Our results indicate that the pDF-reconstruction algorithm can reproduce van der Waals solute-solvent interaction energies to useful kilocalorie per mole accuracy. We subsequently computed polyalanine-water interaction energies for a variety of conformers, which also showed agreement with the simulated values.

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Year:  2016        PMID: 27095487      PMCID: PMC5312610          DOI: 10.1021/acs.jpcb.6b01898

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  38 in total

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  4 in total

1.  Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.

Authors:  Shu-Ching Ou; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2019-03-06       Impact factor: 6.006

2.  Hexahydrated Mg2+ Binding and Outer-Shell Dehydration on RNA Surface.

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Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

3.  Nonpolar Solvation Free Energy from Proximal Distribution Functions.

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Journal:  J Phys Chem B       Date:  2017-01-11       Impact factor: 2.991

4.  Contributions of higher-order proximal distribution functions to solvent structure around proteins.

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Journal:  J Chem Phys       Date:  2021-09-14       Impact factor: 4.304

  4 in total

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