Literature DB >> 21401039

13C spin dilution for simplified and complete solid-state NMR resonance assignment of insoluble biological assemblies.

Antoine Loquet1, Guohua Lv, Karin Giller, Stefan Becker, Adam Lange.   

Abstract

A strategy for simplified and complete resonance assignment of insoluble and noncrystalline proteins by solid-state NMR (ssNMR) spectroscopy is presented. Proteins produced with [1-(13)C]- or [2-(13)C]glucose are very sparsely labeled, and the resulting 2D ssNMR spectra exhibit smaller line widths (by a factor of ∼2 relative to uniformly labeled proteins) and contain a reduced number of cross-peaks. This allows for an accelerated and straightforward resonance assignment without the necessity of time-consuming 3D spectroscopy or sophisticated pulse sequences. The strategy aims at complete backbone and side-chain resonance assignments based on bidirectional sequential walks. The approach was successfully demonstrated with the de novo assignment of the Type Three Secretion System PrgI needle protein. Using a limited set of simple 2D experiments, we report a 97% complete resonance assignment of the backbone and side-chain (13)C atoms.
© 2011 American Chemical Society

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Year:  2011        PMID: 21401039     DOI: 10.1021/ja200066s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Authors:  Matthew T Eddy; Marina Belenky; Astrid C Sivertsen; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

2.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

Authors:  Vipin Agarwal; Mariana Sardo; Ingo Scholz; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

Review 3.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

4.  Chemical ligation of the influenza M2 protein for solid-state NMR characterization of the cytoplasmic domain.

Authors:  Byungsu Kwon; Daniel Tietze; Paul B White; Shu Y Liao; Mei Hong
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

5.  Insight into the conformational stability of membrane-embedded BamA using a combined solution and solid-state NMR approach.

Authors:  Tessa Sinnige; Klaartje Houben; Iva Pritisanac; Marie Renault; Rolf Boelens; Marc Baldus
Journal:  J Biomol NMR       Date:  2015-01-08       Impact factor: 2.835

6.  Perspectives for sensitivity enhancement in proton-detected solid-state NMR of highly deuterated proteins by preserving water magnetization.

Authors:  Veniamin Chevelkov; ShengQi Xiang; Karin Giller; Stefan Becker; Adam Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2015-01-30       Impact factor: 2.835

7.  Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR.

Authors:  Hannes Klaus Fasshuber; Nils-Alexander Lakomek; Birgit Habenstein; Antoine Loquet; Chaowei Shi; Karin Giller; Sebastian Wolff; Stefan Becker; Adam Lange
Journal:  Protein Sci       Date:  2015-03-16       Impact factor: 6.725

Review 8.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

9.  Sparse (13)C labelling for solid-state NMR studies of P. pastoris expressed eukaryotic seven-transmembrane proteins.

Authors:  Jing Liu; Chang Liu; Ying Fan; Rachel A Munro; Vladimir Ladizhansky; Leonid S Brown; Shenlin Wang
Journal:  J Biomol NMR       Date:  2016-04-27       Impact factor: 2.835

Review 10.  Structure and biophysics of type III secretion in bacteria.

Authors:  Srirupa Chatterjee; Sukanya Chaudhury; Andrew C McShan; Kawaljit Kaur; Roberto N De Guzman
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

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