Literature DB >> 21358629

The prospects for designer single-stranded RNA-binding proteins.

Joel P Mackay1, Josep Font, David J Segal.   

Abstract

Spectacular progress has been made in the design of proteins that recognize double-stranded DNA with a chosen specificity, to the point that designer DNA-binding proteins can be ordered commercially. This success raises the question of whether it will be possible to engineer libraries of proteins that can recognize RNA with tailored specificity. Given the recent explosion in the number and diversity of RNA species demonstrated to play roles in biology, designer RNA-binding proteins are set to become valuable tools, both in the research laboratory and potentially in the clinic. Here we discuss the prospects for the realization of this idea.

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Year:  2011        PMID: 21358629     DOI: 10.1038/nsmb.2005

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  58 in total

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Review 4.  Critical parameters for genome editing using zinc finger nucleases.

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5.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
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6.  Structural basis for recognition of the intron branch site RNA by splicing factor 1.

Authors:  Z Liu; I Luyten; M J Bottomley; A C Messias; S Houngninou-Molango; R Sprangers; K Zanier; A Krämer; M Sattler
Journal:  Science       Date:  2001-11-02       Impact factor: 47.728

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Review 10.  Sequence-specific binding of single-stranded RNA: is there a code for recognition?

Authors:  Sigrid D Auweter; Florian C Oberstrass; Frédéric H-T Allain
Journal:  Nucleic Acids Res       Date:  2006-09-18       Impact factor: 16.971

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  26 in total

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Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

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Journal:  J Biol Chem       Date:  2011-09-11       Impact factor: 5.157

4.  New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217.

Authors:  Marylène Vandevenne; David A Jacques; Crisbel Artuz; Cuong Dinh Nguyen; Ann H Y Kwan; David J Segal; Jacqueline M Matthews; Merlin Crossley; J Mitchell Guss; Joel P Mackay
Journal:  J Biol Chem       Date:  2013-02-22       Impact factor: 5.157

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Review 6.  Identification of RNA-protein interaction networks using PAR-CLIP.

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7.  Finding the missing code of RNA recognition by PUF proteins.

Authors:  Yu Chen; Gabriele Varani
Journal:  Chem Biol       Date:  2011-07-29

Review 8.  The potential of engineered eukaryotic RNA-binding proteins as molecular tools and therapeutics.

Authors:  Carl R Shotwell; John D Cleary; J Andrew Berglund
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-11-03       Impact factor: 9.957

9.  Individual RNA base recognition in immobilized oligonucleotides using a protein nanopore.

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10.  The zinc fingers of YY1 bind single-stranded RNA with low sequence specificity.

Authors:  Dorothy C C Wai; Manar Shihab; Jason K K Low; Joel P Mackay
Journal:  Nucleic Acids Res       Date:  2016-07-01       Impact factor: 16.971

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