Literature DB >> 24388609

Molecular neuroanatomy: a generation of progress.

Jonathan D Pollock1, Da-Yu Wu2, John S Satterlee2.   

Abstract

The neuroscience research landscape has changed dramatically over the past decade. Specifically, an impressive array of new tools and technologies have been generated, including but not limited to: brain gene expression atlases, genetically encoded proteins to monitor and manipulate neuronal activity, and new methods for imaging and mapping circuits. However, despite these technological advances, several significant challenges must be overcome to enable a better understanding of brain function and to develop cell type-targeted therapeutics to treat brain disorders. This review provides an overview of some of the tools and technologies currently being used to advance the field of molecular neuroanatomy, and also discusses emerging technologies that may enable neuroscientists to address these crucial scientific challenges over the coming decade. Published by Elsevier Ltd.

Entities:  

Keywords:  DNA and cellular barcoding; atlases; connectome; genetically encode biosensors and activators; microscopy; neuroanatomy; neuroscience resources; transgenic

Mesh:

Year:  2013        PMID: 24388609      PMCID: PMC3946666          DOI: 10.1016/j.tins.2013.11.001

Source DB:  PubMed          Journal:  Trends Neurosci        ISSN: 0166-2236            Impact factor:   13.837


  150 in total

1.  Array tomography: semiautomated image alignment.

Authors:  Kristina D Micheva; Nancy O'Rourke; Brad Busse; Stephen J Smith
Journal:  Cold Spring Harb Protoc       Date:  2010-11-01

2.  Genome-wide atlas of gene expression in the adult mouse brain.

Authors:  Ed S Lein; Michael J Hawrylycz; Nancy Ao; Mikael Ayres; Amy Bensinger; Amy Bernard; Andrew F Boe; Mark S Boguski; Kevin S Brockway; Emi J Byrnes; Lin Chen; Li Chen; Tsuey-Ming Chen; Mei Chi Chin; Jimmy Chong; Brian E Crook; Aneta Czaplinska; Chinh N Dang; Suvro Datta; Nick R Dee; Aimee L Desaki; Tsega Desta; Ellen Diep; Tim A Dolbeare; Matthew J Donelan; Hong-Wei Dong; Jennifer G Dougherty; Ben J Duncan; Amanda J Ebbert; Gregor Eichele; Lili K Estin; Casey Faber; Benjamin A Facer; Rick Fields; Shanna R Fischer; Tim P Fliss; Cliff Frensley; Sabrina N Gates; Katie J Glattfelder; Kevin R Halverson; Matthew R Hart; John G Hohmann; Maureen P Howell; Darren P Jeung; Rebecca A Johnson; Patrick T Karr; Reena Kawal; Jolene M Kidney; Rachel H Knapik; Chihchau L Kuan; James H Lake; Annabel R Laramee; Kirk D Larsen; Christopher Lau; Tracy A Lemon; Agnes J Liang; Ying Liu; Lon T Luong; Jesse Michaels; Judith J Morgan; Rebecca J Morgan; Marty T Mortrud; Nerick F Mosqueda; Lydia L Ng; Randy Ng; Geralyn J Orta; Caroline C Overly; Tu H Pak; Sheana E Parry; Sayan D Pathak; Owen C Pearson; Ralph B Puchalski; Zackery L Riley; Hannah R Rockett; Stephen A Rowland; Joshua J Royall; Marcos J Ruiz; Nadia R Sarno; Katherine Schaffnit; Nadiya V Shapovalova; Taz Sivisay; Clifford R Slaughterbeck; Simon C Smith; Kimberly A Smith; Bryan I Smith; Andy J Sodt; Nick N Stewart; Kenda-Ruth Stumpf; Susan M Sunkin; Madhavi Sutram; Angelene Tam; Carey D Teemer; Christina Thaller; Carol L Thompson; Lee R Varnam; Axel Visel; Ray M Whitlock; Paul E Wohnoutka; Crissa K Wolkey; Victoria Y Wong; Matthew Wood; Murat B Yaylaoglu; Rob C Young; Brian L Youngstrom; Xu Feng Yuan; Bin Zhang; Theresa A Zwingman; Allan R Jones
Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

Review 3.  Genetically engineered fluorescent voltage reporters.

Authors:  Hiroki Mutoh; Walther Akemann; Thomas Knöpfel
Journal:  ACS Chem Neurosci       Date:  2012-06-06       Impact factor: 4.418

4.  Dissecting T cell lineage relationships by cellular barcoding.

Authors:  Koen Schepers; Erwin Swart; Jeroen W J van Heijst; Carmen Gerlach; Maria Castrucci; Daoud Sie; Mike Heimerikx; Arno Velds; Ron M Kerkhoven; Ramon Arens; Ton N M Schumacher
Journal:  J Exp Med       Date:  2008-09-22       Impact factor: 14.307

5.  Cellular composition characterizing postnatal development and maturation of the mouse brain and spinal cord.

Authors:  YuHong Fu; Zoltán Rusznák; Suzana Herculano-Houzel; Charles Watson; George Paxinos
Journal:  Brain Struct Funct       Date:  2012-10-06       Impact factor: 3.270

6.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:  Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason D Lieb; Robert H Waterston
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

7.  Mapping brain networks in awake mice using combined optical neural control and fMRI.

Authors:  M Desai; I Kahn; U Knoblich; J Bernstein; H Atallah; A Yang; N Kopell; R L Buckner; A M Graybiel; C I Moore; E S Boyden
Journal:  J Neurophysiol       Date:  2010-12-15       Impact factor: 2.714

8.  Three-dimensional multiwaveguide probe array for light delivery to distributed brain circuits.

Authors:  Anthony N Zorzos; Jorg Scholvin; Edward S Boyden; Clifton G Fonstad
Journal:  Opt Lett       Date:  2012-12-01       Impact factor: 3.776

9.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

Review 10.  Machines that learn to segment images: a crucial technology for connectomics.

Authors:  Viren Jain; H Sebastian Seung; Srinivas C Turaga
Journal:  Curr Opin Neurobiol       Date:  2010-10       Impact factor: 6.627

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  13 in total

Review 1.  Information processing in the CNS: a supramolecular chemistry?

Authors:  Arturo Tozzi
Journal:  Cogn Neurodyn       Date:  2015-03-10       Impact factor: 5.082

Review 2.  Viral vector-based tools advance knowledge of basal ganglia anatomy and physiology.

Authors:  Rachel J Sizemore; Sonja Seeger-Armbruster; Stephanie M Hughes; Louise C Parr-Brownlie
Journal:  J Neurophysiol       Date:  2016-02-17       Impact factor: 2.714

3.  Neuroepigenomics: Resources, Obstacles, and Opportunities.

Authors:  John S Satterlee; Andrea Beckel-Mitchener; Roger Little; Dena Procaccini; Joni L Rutter; Amy C Lossie
Journal:  Neuroepigenetics       Date:  2015-01-01

Review 4.  Designing tools for assumption-proof brain mapping.

Authors:  Adam H Marblestone; Edward S Boyden
Journal:  Neuron       Date:  2014-09-17       Impact factor: 17.173

Review 5.  Decoding neuroproteomics: integrating the genome, translatome and functional anatomy.

Authors:  Robert R Kitchen; Joel S Rozowsky; Mark B Gerstein; Angus C Nairn
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

6.  Neural networks of the mouse neocortex.

Authors:  Brian Zingg; Houri Hintiryan; Lin Gou; Monica Y Song; Maxwell Bay; Michael S Bienkowski; Nicholas N Foster; Seita Yamashita; Ian Bowman; Arthur W Toga; Hong-Wei Dong
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

7.  Transcriptional maturation of the mouse auditory forebrain.

Authors:  Troy A Hackett; Yan Guo; Amanda Clause; Nicholas J Hackett; Krassimira Garbett; Pan Zhang; Daniel B Polley; Karoly Mirnics
Journal:  BMC Genomics       Date:  2015-08-14       Impact factor: 3.969

Review 8.  Lentiviral vectors as tools to understand central nervous system biology in mammalian model organisms.

Authors:  Louise C Parr-Brownlie; Clémentine Bosch-Bouju; Lucia Schoderboeck; Rachel J Sizemore; Wickliffe C Abraham; Stephanie M Hughes
Journal:  Front Mol Neurosci       Date:  2015-05-18       Impact factor: 5.639

9.  Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain.

Authors:  Michaela Matthes; Martin Preusse; Jingzhong Zhang; Julia Schechter; Daniela Mayer; Bernd Lentes; Fabian Theis; Nilima Prakash; Wolfgang Wurst; Dietrich Trümbach
Journal:  Database (Oxford)       Date:  2014-08-20       Impact factor: 3.451

Review 10.  Connectomic Analysis of Brain Networks: Novel Techniques and Future Directions.

Authors:  J Leonie Cazemier; Francisco Clascá; Paul H E Tiesinga
Journal:  Front Neuroanat       Date:  2016-11-09       Impact factor: 3.856

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