Literature DB >> 31680457

The potential of engineered eukaryotic RNA-binding proteins as molecular tools and therapeutics.

Carl R Shotwell1, John D Cleary2, J Andrew Berglund3.   

Abstract

Eukaroytic RNA-binding proteins (RBPs) recognize and process RNAs through recognition of their sequence motifs via RNA-binding domains (RBDs). RBPs usually consist of one or more RBDs and can include additional functional domains that modify or cleave RNA. Engineered RBPs have been used to answer basic biology questions, control gene expression, locate viral RNA in vivo, as well as many other tasks. Given the growing number of diseases associated with RNA and RBPs, engineered RBPs also have the potential to serve as therapeutics. This review provides an in depth description of recent advances in engineered RBPs and discusses opportunities and challenges in the field. This article is categorized under: RNA Interactions with Proteins and Other Molecules > Protein-RNA Recognition RNA Methods > RNA Nanotechnology RNA in Disease and Development > RNA in Disease.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  RNA-binding domains; RNA-binding proteins; RNA-protein interaction; engineered RNA-binding proteins

Year:  2019        PMID: 31680457      PMCID: PMC7175410          DOI: 10.1002/wrna.1573

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  137 in total

1.  Molecular basis of RNA recognition by the human alternative splicing factor Fox-1.

Authors:  Sigrid D Auweter; Rudi Fasan; Luc Reymond; Jason G Underwood; Douglas L Black; Stefan Pitsch; Frédéric H-T Allain
Journal:  EMBO J       Date:  2005-12-15       Impact factor: 11.598

Review 2.  Argonaute proteins: key players in RNA silencing.

Authors:  Gyorgy Hutvagner; Martin J Simard
Journal:  Nat Rev Mol Cell Biol       Date:  2008-01       Impact factor: 94.444

3.  The prospects for designer single-stranded RNA-binding proteins.

Authors:  Joel P Mackay; Josep Font; David J Segal
Journal:  Nat Struct Mol Biol       Date:  2011-02-27       Impact factor: 15.369

4.  Specific RNA recognition by designer pentatricopeptide repeat protein.

Authors:  Cuicui Shen; Xiang Wang; Yexing Liu; Quanxiu Li; Zhao Yang; Nieng Yan; Tingting Zou; Ping Yin
Journal:  Mol Plant       Date:  2015-01-07       Impact factor: 13.164

Review 5.  Introducing protein intrinsic disorder.

Authors:  Johnny Habchi; Peter Tompa; Sonia Longhi; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-17       Impact factor: 60.622

6.  KH domain: one motif, two folds.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

7.  FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2.

Authors:  Jacob C Schwartz; Christopher C Ebmeier; Elaine R Podell; Joseph Heimiller; Dylan J Taatjes; Thomas R Cech
Journal:  Genes Dev       Date:  2012-12-15       Impact factor: 11.361

8.  Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing.

Authors:  B R Graveley; T Maniatis
Journal:  Mol Cell       Date:  1998-04       Impact factor: 17.970

9.  The TGB1 movement protein of Potato virus X reorganizes actin and endomembranes into the X-body, a viral replication factory.

Authors:  Jens Tilsner; Olga Linnik; Kathryn M Wright; Karen Bell; Alison G Roberts; Christophe Lacomme; Simon Santa Cruz; Karl J Oparka
Journal:  Plant Physiol       Date:  2012-01-17       Impact factor: 8.340

10.  Exploring the suitability of RanBP2-type Zinc Fingers for RNA-binding protein design.

Authors:  Simona De Franco; Julie Vandenameele; Alain Brans; Olivier Verlaine; Katerina Bendak; Christian Damblon; André Matagne; David J Segal; Moreno Galleni; Joel P Mackay; Marylène Vandevenne
Journal:  Sci Rep       Date:  2019-02-21       Impact factor: 4.379

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  2 in total

Review 1.  RNA-Binding Protein Rbm24 as a Multifaceted Post-Transcriptional Regulator of Embryonic Lineage Differentiation and Cellular Homeostasis.

Authors:  Raphaëlle Grifone; Ming Shao; Audrey Saquet; De-Li Shi
Journal:  Cells       Date:  2020-08-12       Impact factor: 6.600

Review 2.  RNAs on the Go: Extracellular Transfer in Insects with Promising Prospects for Pest Management.

Authors:  Dulce Santos; Simon Remans; Stijn Van den Brande; Jozef Vanden Broeck
Journal:  Plants (Basel)       Date:  2021-03-04
  2 in total

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