Literature DB >> 21307182

A role for tRNA(His) guanylyltransferase (Thg1)-like proteins from Dictyostelium discoideum in mitochondrial 5'-tRNA editing.

Maria G Abad1, Yicheng Long, Allison Willcox, Jonatha M Gott, Michael W Gray, Jane E Jackman.   

Abstract

Genes with sequence similarity to the yeast tRNA(His) guanylyltransferase (Thg1) gene have been identified in all three domains of life, and Thg1 family enzymes are implicated in diverse processes, ranging from tRNA(His) maturation to 5'-end repair of tRNAs. All of these activities take advantage of the ability of Thg1 family enzymes to catalyze 3'-5' nucleotide addition reactions. Although many Thg1-containing organisms have a single Thg1-related gene, certain eukaryotic microbes possess multiple genes with sequence similarity to Thg1. Here we investigate the activities of four Thg1-like proteins (TLPs) encoded by the genome of the slime mold, Dictyostelium discoideum (a member of the eukaryotic supergroup Amoebozoa). We show that one of the four TLPs is a bona fide Thg1 ortholog, a cytoplasmic G(-1) addition enzyme likely to be responsible for tRNA(His) maturation in D. discoideum. Two other D. discoideum TLPs exhibit biochemical activities consistent with a role for these enzymes in mitochondrial 5'-tRNA editing, based on their ability to efficiently repair the 5' ends of mitochondrial tRNA editing substrates. Although 5'-tRNA editing was discovered nearly two decades ago, the identity of the protein(s) that catalyze this activity has remained elusive. This article provides the first identification of any purified protein that appears to play a role in the 5'-tRNA editing reaction. Moreover, the presence of multiple Thg1 family members in D. discoideum suggests that gene duplication and divergence during evolution has resulted in paralogous proteins that use 3'-5' nucleotide addition reactions for diverse biological functions in the same organism.

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Year:  2011        PMID: 21307182      PMCID: PMC3062173          DOI: 10.1261/rna.2517111

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  32 in total

1.  tRNAHis guanylyltransferase adds G-1 to the 5' end of tRNAHis by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases.

Authors:  Jane E Jackman; Eric M Phizicky
Journal:  RNA       Date:  2006-04-19       Impact factor: 4.942

2.  Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C.

Authors:  Weifeng Gu; Rebecca L Hurto; Anita K Hopper; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

3.  tRNAHis guanylyltransferase catalyzes a 3'-5' polymerization reaction that is distinct from G-1 addition.

Authors:  Jane E Jackman; Eric M Phizicky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

4.  Computational method to predict mitochondrially imported proteins and their targeting sequences.

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Journal:  Eur J Biochem       Date:  1996-11-01

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

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Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine.

Authors:  M J Laforest; I Roewer; B F Lang
Journal:  Nucleic Acids Res       Date:  1997-02-01       Impact factor: 16.971

7.  A novel nucleotide incorporation activity implicated in the editing of mitochondrial transfer RNAs in Acanthamoeba castellanii.

Authors:  D H Price; M W Gray
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

8.  Confirmation of predicted edits and demonstration of unpredicted edits in Acanthamoeba castellanii mitochondrial tRNAs.

Authors:  D H Price; M W Gray
Journal:  Curr Genet       Date:  1999-02       Impact factor: 3.886

9.  In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a Chytridiomycete fungus.

Authors:  Charles E Bullerwell; Michael W Gray
Journal:  J Biol Chem       Date:  2004-11-15       Impact factor: 5.157

10.  The genome of the social amoeba Dictyostelium discoideum.

Authors:  L Eichinger; J A Pachebat; G Glöckner; M-A Rajandream; R Sucgang; M Berriman; J Song; R Olsen; K Szafranski; Q Xu; B Tunggal; S Kummerfeld; M Madera; B A Konfortov; F Rivero; A T Bankier; R Lehmann; N Hamlin; R Davies; P Gaudet; P Fey; K Pilcher; G Chen; D Saunders; E Sodergren; P Davis; A Kerhornou; X Nie; N Hall; C Anjard; L Hemphill; N Bason; P Farbrother; B Desany; E Just; T Morio; R Rost; C Churcher; J Cooper; S Haydock; N van Driessche; A Cronin; I Goodhead; D Muzny; T Mourier; A Pain; M Lu; D Harper; R Lindsay; H Hauser; K James; M Quiles; M Madan Babu; T Saito; C Buchrieser; A Wardroper; M Felder; M Thangavelu; D Johnson; A Knights; H Loulseged; K Mungall; K Oliver; C Price; M A Quail; H Urushihara; J Hernandez; E Rabbinowitsch; D Steffen; M Sanders; J Ma; Y Kohara; S Sharp; M Simmonds; S Spiegler; A Tivey; S Sugano; B White; D Walker; J Woodward; T Winckler; Y Tanaka; G Shaulsky; M Schleicher; G Weinstock; A Rosenthal; E C Cox; R L Chisholm; R Gibbs; W F Loomis; M Platzer; R R Kay; J Williams; P H Dear; A A Noegel; B Barrell; A Kuspa
Journal:  Nature       Date:  2005-05-05       Impact factor: 49.962

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  22 in total

1.  Kinetic analysis of 3'-5' nucleotide addition catalyzed by eukaryotic tRNA(His) guanylyltransferase.

Authors:  Brian A Smith; Jane E Jackman
Journal:  Biochemistry       Date:  2011-12-14       Impact factor: 3.162

Review 2.  Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Authors:  Jane E Jackman; Jonatha M Gott; Michael W Gray
Journal:  RNA       Date:  2012-03-28       Impact factor: 4.942

3.  Structural basis of reverse nucleotide polymerization.

Authors:  Akiyoshi Nakamura; Taiki Nemoto; Ilka U Heinemann; Keitaro Yamashita; Tomoyo Sonoda; Keisuke Komoda; Isao Tanaka; Dieter Söll; Min Yao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

4.  Repairing tRNA termini: News from the 3' end.

Authors:  Christiane Rammelt; Walter Rossmanith
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

5.  Minimal requirements for reverse polymerization and tRNA repair by tRNAHis guanylyltransferase.

Authors:  Riddhi Desai; Kunmo Kim; Hanna C Büchsenschütz; Allan W Chen; Yumin Bi; Mitchell R Mann; Matthew A Turk; Christina Z Chung; Ilka U Heinemann
Journal:  RNA Biol       Date:  2017-09-29       Impact factor: 4.652

6.  In vitro substrate specificities of 3'-5' polymerases correlate with biological outcomes of tRNA 5'-editing reactions.

Authors:  Yicheng Long; Jane E Jackman
Journal:  FEBS Lett       Date:  2015-07-02       Impact factor: 4.124

7.  A mutation in the THG1L gene in a family with cerebellar ataxia and developmental delay.

Authors:  Simon Edvardson; Yael Elbaz-Alon; Chaim Jalas; Ashanti Matlock; Krishna Patel; Katherine Labbé; Avraham Shaag; Jane E Jackman; Orly Elpeleg
Journal:  Neurogenetics       Date:  2016-06-15       Impact factor: 2.660

8.  5'-End sequencing in Saccharomyces cerevisiae offers new insights into 5'-ends of tRNAH is and snoRNAs.

Authors:  Samantha Dodbele; Blythe Moreland; Spencer M Gardner; Ralf Bundschuh; Jane E Jackman
Journal:  FEBS Lett       Date:  2019-04-04       Impact factor: 4.124

9.  Chemical footprinting and kinetic assays reveal dual functions for highly conserved eukaryotic tRNAHis guanylyltransferase residues.

Authors:  Ashanti O Matlock; Brian A Smith; Jane E Jackman
Journal:  J Biol Chem       Date:  2019-04-18       Impact factor: 5.157

10.  Mitochondrial tRNA 5'-editing in Dictyostelium discoideum and Polysphondylium pallidum.

Authors:  Maria G Abad; Yicheng Long; R Dimitri Kinchen; Elinor T Schindel; Michael W Gray; Jane E Jackman
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

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