Literature DB >> 30908619

5'-End sequencing in Saccharomyces cerevisiae offers new insights into 5'-ends of tRNAH is and snoRNAs.

Samantha Dodbele1,2,3, Blythe Moreland3,4, Spencer M Gardner2,3, Ralf Bundschuh2,3,4,5, Jane E Jackman1,2,3.   

Abstract

tRNAH is guanylyltransferase (Thg1) specifies eukaryotic tRNAH is identity by catalysing a 3'-5' non-Watson-Crick (WC) addition of guanosine to the 5'-end of tRNAH is . Thg1 family enzymes in Archaea and Bacteria, called Thg1-like proteins (TLPs), catalyse a similar but distinct 3'-5' addition in an exclusively WC-dependent manner. Here, a genetic system in Saccharomyces cerevisiae was employed to further assess the biochemical differences between Thg1 and TLPs. Utilizing a novel 5'-end sequencing pipeline, we find that a Bacillus thuringiensis TLP sustains the growth of a thg1Δ strain by maintaining a WC-dependent addition of U-1 across from A73 . Additionally, we observe 5'-end heterogeneity in S. cerevisiae small nucleolar RNAs (snoRNAs), an observation that may inform methods of annotation and mechanisms of snoRNA processing.
© 2019 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990Bacillus thuringiensiszzm321990; zzm321990Saccharomyces cerevisiaezzm321990; zzm321990tRNAHzzm321990iszzm321990; 3′-5′ polymerization; RNA-Seq; snoRNA

Mesh:

Substances:

Year:  2019        PMID: 30908619      PMCID: PMC6513681          DOI: 10.1002/1873-3468.13364

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  37 in total

1.  Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C.

Authors:  Weifeng Gu; Rebecca L Hurto; Anita K Hopper; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

2.  tRNAHis guanylyltransferase catalyzes a 3'-5' polymerization reaction that is distinct from G-1 addition.

Authors:  Jane E Jackman; Eric M Phizicky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

Review 3.  RNase P RNA mediated cleavage: substrate recognition and catalysis.

Authors:  Leif A Kirsebom
Journal:  Biochimie       Date:  2007-06-02       Impact factor: 4.079

4.  Analysis of 5'- or 3'-terminal tRNA editing: mitochondrial 5' tRNA editing in Acanthamoeba castellanii as the exemplar.

Authors:  Amanda J Lohan; Michael W Gray
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

5.  Processing of intron-encoded box C/D small nucleolar RNAs lacking a 5',3'-terminal stem structure.

Authors:  X Darzacq; T Kiss
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

6.  The position of yeast snoRNA-coding regions within host introns is essential for their biosynthesis and for efficient splicing of the host pre-mRNA.

Authors:  Sara Vincenti; Valentina De Chiara; Irene Bozzoni; Carlo Presutti
Journal:  RNA       Date:  2006-11-29       Impact factor: 4.942

7.  A computational screen for methylation guide snoRNAs in yeast.

Authors:  T M Lowe; S R Eddy
Journal:  Science       Date:  1999-02-19       Impact factor: 47.728

8.  tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis.

Authors:  Weifeng Gu; Jane E Jackman; Amanda J Lohan; Michael W Gray; Eric M Phizicky
Journal:  Genes Dev       Date:  2003-11-21       Impact factor: 11.361

9.  Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome.

Authors:  Peter Schattner; Wayne A Decatur; Carrie A Davis; Manuel Ares; Maurille J Fournier; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2004-08-11       Impact factor: 16.971

10.  snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome.

Authors:  Jian-Hua Yang; Xiao-Chen Zhang; Zhan-Peng Huang; Hui Zhou; Mian-Bo Huang; Shu Zhang; Yue-Qin Chen; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2006-09-20       Impact factor: 16.971

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  3 in total

1.  Fidelity of base-pair recognition by a 3'-5' polymerase: mechanism of the Saccharomyces cerevisiae tRNAHis guanylyltransferase.

Authors:  Krishna J Patel; Paul Yourik; Jane E Jackman
Journal:  RNA       Date:  2021-03-31       Impact factor: 5.636

Review 2.  The Role of 3' to 5' Reverse RNA Polymerization in tRNA Fidelity and Repair.

Authors:  Allan W Chen; Malithi I Jayasinghe; Christina Z Chung; Bhalchandra S Rao; Rosan Kenana; Ilka U Heinemann; Jane E Jackman
Journal:  Genes (Basel)       Date:  2019-03-26       Impact factor: 4.096

3.  Analysis of GTP addition in the reverse (3'-5') direction by human tRNAHis guanylyltransferase.

Authors:  Akiyoshi Nakamura; Daole Wang; Yasuo Komatsu
Journal:  RNA       Date:  2021-03-23       Impact factor: 5.636

  3 in total

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