Literature DB >> 22456265

Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Jane E Jackman1, Jonatha M Gott, Michael W Gray.   

Abstract

The tRNA(His) guanylyltransferase (Thg1) family of enzymes comprises members from all three domains of life (Eucarya, Bacteria, Archaea). Although the initial activity associated with Thg1 enzymes was a single 3'-to-5' nucleotide addition reaction that specifies tRNA(His) identity in eukaryotes, the discovery of a generalized base pair-dependent 3'-to-5' polymerase reaction greatly expanded the scope of Thg1 family-catalyzed reactions to include tRNA repair and editing activities in bacteria, archaea, and organelles. While the identification of the 3'-to-5' polymerase activity associated with Thg1 enzymes is relatively recent, the roots of this discovery and its likely physiological relevance were described ≈ 30 yr ago. Here we review recent advances toward understanding diverse Thg1 family enzyme functions and mechanisms. We also discuss possible evolutionary origins of Thg1 family-catalyzed 3'-to-5' addition activities and their implications for the currently observed phylogenetic distribution of Thg1-related enzymes in biology.

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Year:  2012        PMID: 22456265      PMCID: PMC3334698          DOI: 10.1261/rna.032300.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  62 in total

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Authors:  A Stoltzfus
Journal:  J Mol Evol       Date:  1999-08       Impact factor: 2.395

2.  Kinetic analysis of 3'-5' nucleotide addition catalyzed by eukaryotic tRNA(His) guanylyltransferase.

Authors:  Brian A Smith; Jane E Jackman
Journal:  Biochemistry       Date:  2011-12-14       Impact factor: 3.162

3.  Depletion of Saccharomyces cerevisiae tRNA(His) guanylyltransferase Thg1p leads to uncharged tRNAHis with additional m(5)C.

Authors:  Weifeng Gu; Rebecca L Hurto; Anita K Hopper; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

Review 4.  Universal rules and idiosyncratic features in tRNA identity.

Authors:  R Giegé; M Sissler; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

Review 5.  Basic mechanisms of transcript elongation and its regulation.

Authors:  S M Uptain; C M Kane; M J Chamberlin
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

6.  tRNA(His) guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases.

Authors:  Samantha J Hyde; Brian E Eckenroth; Brian A Smith; William A Eberley; Nicholas H Heintz; Jane E Jackman; Sylvie Doublié
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

7.  Role of the extra G-C pair at the end of the acceptor stem of tRNA(His) in aminoacylation.

Authors:  H Himeno; T Hasegawa; T Ueda; K Watanabe; K Miura; M Shimizu
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

8.  The 5'-terminal guanylate of chloroplast histidine tRNA is encoded in its gene.

Authors:  U Burkard; D Söll
Journal:  J Biol Chem       Date:  1988-07-15       Impact factor: 5.157

9.  Identification and characterization of a novel cytoplasm protein ICF45 that is involved in cell cycle regulation.

Authors:  Deliang Guo; Kun Hu; Ying Lei; Yongchao Wang; Tianlin Ma; Dacheng He
Journal:  J Biol Chem       Date:  2004-09-29       Impact factor: 5.157

10.  TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.

Authors:  David H Ardell; Siv G E Andersson
Journal:  Nucleic Acids Res       Date:  2006-02-09       Impact factor: 16.971

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  31 in total

1.  Structural basis of reverse nucleotide polymerization.

Authors:  Akiyoshi Nakamura; Taiki Nemoto; Ilka U Heinemann; Keitaro Yamashita; Tomoyo Sonoda; Keisuke Komoda; Isao Tanaka; Dieter Söll; Min Yao
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

2.  Naturally occurring dual recognition of tRNAHis substrates with and without a universal identity element.

Authors:  Yi-Hsueh Lee; Ya-Ting Lo; Chia-Pei Chang; Chung-Shu Yeh; Tien-Hsien Chang; Yu-Wei Chen; Yi-Kuan Tseng; Chien-Chia Wang
Journal:  RNA Biol       Date:  2019-06-16       Impact factor: 4.652

Review 3.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

4.  Minimal requirements for reverse polymerization and tRNA repair by tRNAHis guanylyltransferase.

Authors:  Riddhi Desai; Kunmo Kim; Hanna C Büchsenschütz; Allan W Chen; Yumin Bi; Mitchell R Mann; Matthew A Turk; Christina Z Chung; Ilka U Heinemann
Journal:  RNA Biol       Date:  2017-09-29       Impact factor: 4.652

5.  In vitro substrate specificities of 3'-5' polymerases correlate with biological outcomes of tRNA 5'-editing reactions.

Authors:  Yicheng Long; Jane E Jackman
Journal:  FEBS Lett       Date:  2015-07-02       Impact factor: 4.124

6.  Evolutionary gain of highly divergent tRNA specificities by two isoforms of human histidyl-tRNA synthetase.

Authors:  Yi-Hsueh Lee; Chia-Pei Chang; Yu-Ju Cheng; Yi-Yi Kuo; Yeong-Shin Lin; Chien-Chia Wang
Journal:  Cell Mol Life Sci       Date:  2017-03-20       Impact factor: 9.261

7.  Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Authors:  Mary Anne T Rubio; Zdeněk Paris; Kirk W Gaston; Ian M C Fleming; Paul Sample; Christopher R Trotta; Juan D Alfonzo
Journal:  Mol Cell       Date:  2013-10-03       Impact factor: 17.970

Review 8.  U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight.

Authors:  Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2015-11-10

9.  Mitochondrial tRNA 5'-editing in Dictyostelium discoideum and Polysphondylium pallidum.

Authors:  Maria G Abad; Yicheng Long; R Dimitri Kinchen; Elinor T Schindel; Michael W Gray; Jane E Jackman
Journal:  J Biol Chem       Date:  2014-04-15       Impact factor: 5.157

Review 10.  Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae.

Authors:  Anita K Hopper
Journal:  Genetics       Date:  2013-05       Impact factor: 4.562

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