Literature DB >> 19201430

Investigating the conservation pattern of a putative second terpene synthase divalent metal binding motif in plants.

Ke Zhou1, Reuben J Peters.   

Abstract

Terpene synthases (TPS) require divalent metal ion co-factors, typically magnesium, that are bound by a canonical DDXXD motif, as well as a putative second, seemingly less well conserved and understood (N/D)DXX(S/T)XXXE motif. Given the role of the Ser/Thr side chain hydroxyl group in ligating one of the three catalytically requisite divalent metal ions and the loss of catalytic activity upon substitution with Ala, it is surprising that Gly is frequently found in this 'middle' position of the putative second divalent metal binding motif in plant TPS. Herein we report mutational investigation of this discrepancy in a model plant diterpene cyclase, abietadiene synthase from Abies grandis (AgAS). Substitution of the corresponding Thr in AgAS with Ser or Gly decreased catalytic activity much less than substitution with Ala. We speculate that the ability of Gly to partially restore activity relative to Ala substitution for Ser/Thr stems from the associated reduction in steric volume enabling a water molecule to substitute for the hydroxyl group from Ser/Thr, potentially in a divalent metal ion coordination sphere. In any case, our results are consistent with the observed conservation pattern for this putative second divalent metal ion binding motif in plant TPS.

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Year:  2009        PMID: 19201430      PMCID: PMC2682547          DOI: 10.1016/j.phytochem.2008.12.022

Source DB:  PubMed          Journal:  Phytochemistry        ISSN: 0031-9422            Impact factor:   4.072


  19 in total

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Authors:  M J Rynkiewicz; D E Cane; D W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

2.  Bifunctional abietadiene synthase: mutual structural dependence of the active sites for protonation-initiated and ionization-initiated cyclizations.

Authors:  Reuben J Peters; Ora A Carter; Yan Zhang; Brian W Matthews; Rodney B Croteau
Journal:  Biochemistry       Date:  2003-03-11       Impact factor: 3.162

3.  Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclase.

Authors:  Douglas A Whittington; Mitchell L Wise; Marek Urbansky; Robert M Coates; Rodney B Croteau; David W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

4.  Abietadiene synthase catalysis: mutational analysis of a prenyl diphosphate ionization-initiated cyclization and rearrangement.

Authors:  Reuben J Peters; Rodney B Croteau
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

5.  Molecular cloning and characterization of a cDNA encoding the gibberellin biosynthetic enzyme ent-kaurene synthase B from pumpkin (Cucurbita maxima L.).

Authors:  S Yamaguchi; T Saito; H Abe; H Yamane; N Murofushi; Y Kamiya
Journal:  Plant J       Date:  1996-08       Impact factor: 6.417

6.  Abietadiene synthase from grand fir (Abies grandis): characterization and mechanism of action of the "pseudomature" recombinant enzyme.

Authors:  R J Peters; J E Flory; R Jetter; M M Ravn; H J Lee; R M Coates; R B Croteau
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

7.  Structural and mechanistic analysis of trichodiene synthase using site-directed mutagenesis: probing the catalytic function of tyrosine-295 and the asparagine-225/serine-229/glutamate-233-Mg2+B motif.

Authors:  L Sangeetha Vedula; Jiaoyang Jiang; Tatiana Zakharian; David E Cane; David W Christianson
Journal:  Arch Biochem Biophys       Date:  2007-10-30       Impact factor: 4.013

8.  Functional characterization of nine Norway Spruce TPS genes and evolution of gymnosperm terpene synthases of the TPS-d subfamily.

Authors:  Diane M Martin; Jenny Fäldt; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2004-08-13       Impact factor: 8.340

9.  Gene family for an elicitor-induced sesquiterpene cyclase in tobacco.

Authors:  P J Facchini; J Chappell
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

10.  Aristolochene synthase: mechanistic analysis of active site residues by site-directed mutagenesis.

Authors:  Brunella Felicetti; David E Cane
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

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  24 in total

1.  Trinuclear Metal Clusters in Catalysis by Terpenoid Synthases.

Authors:  Julie A Aaron; David W Christianson
Journal:  Pure Appl Chem       Date:  2010       Impact factor: 2.453

2.  Insights into diterpene cyclization from structure of bifunctional abietadiene synthase from Abies grandis.

Authors:  Ke Zhou; Yang Gao; Julie A Hoy; Francis M Mann; Richard B Honzatko; Reuben J Peters
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

Review 3.  Structural and Chemical Biology of Terpenoid Cyclases.

Authors:  David W Christianson
Journal:  Chem Rev       Date:  2017-08-25       Impact factor: 60.622

4.  Novel product chemistry from mechanistic analysis of ent-copalyl diphosphate synthases from plant hormone biosynthesis.

Authors:  Kevin Potter; Jared Criswell; Jiachen Zi; Alisha Stubbs; Reuben J Peters
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-23       Impact factor: 15.336

5.  Isolation and functional characterization of a τ-cadinol synthase, a new sesquiterpene synthase from Lavandula angustifolia.

Authors:  Frédéric Jullien; Sandrine Moja; Aurélie Bony; Sylvain Legrand; Cécile Petit; Tarek Benabdelkader; Kévin Poirot; Sébastien Fiorucci; Yann Guitton; Florence Nicolè; Sylvie Baudino; Jean-Louis Magnard
Journal:  Plant Mol Biol       Date:  2014-01       Impact factor: 4.076

6.  Cloning and characterization of a novel gene that encodes (S)-beta-bisabolene synthase from ginger, Zingiber officinale.

Authors:  Masaki Fujisawa; Hisashi Harada; Hiromichi Kenmoku; Satoru Mizutani; Norihiko Misawa
Journal:  Planta       Date:  2010-03-13       Impact factor: 4.116

7.  Biochemical characterization of the castor bean ent-kaurene synthase(-like) family supports quantum chemical view of diterpene cyclization.

Authors:  Alana J Jackson; David M Hershey; Taylor Chesnut; Meimei Xu; Reuben J Peters
Journal:  Phytochemistry       Date:  2014-05-05       Impact factor: 4.072

8.  Functional characterization of wheat ent-kaurene(-like) synthases indicates continuing evolution of labdane-related diterpenoid metabolism in the cereals.

Authors:  Ke Zhou; Meimei Xu; Mollie Tiernan; Qian Xie; Tomonobu Toyomasu; Chizu Sugawara; Madoka Oku; Masami Usui; Wataru Mitsuhashi; Makiko Chono; Peter M Chandler; Reuben J Peters
Journal:  Phytochemistry       Date:  2012-09-22       Impact factor: 4.072

9.  Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis.

Authors:  Heather A Gennadios; Veronica Gonzalez; Luigi Di Costanzo; Amang Li; Fanglei Yu; David J Miller; Rudolf K Allemann; David W Christianson
Journal:  Biochemistry       Date:  2009-07-07       Impact factor: 3.162

10.  Edaxadiene: a new bioactive diterpene from Mycobacterium tuberculosis.

Authors:  Francis M Mann; Meimei Xu; Xiaoming Chen; D Bruce Fulton; David G Russell; Reuben J Peters
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

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