Literature DB >> 29399379

Chemical Control in the Battle against Fidelity in Promiscuous Natural Product Biosynthesis: The Case of Trichodiene Synthase.

Mudit Dixit1, Michal Weitman1, Jiali Gao2,3, Dan T Major1.   

Abstract

Terpene cyclases catalyze the highly stereospecific molding of polyisoprenes into terpenes, which are precursors to most known natural compounds. The isoprenoids are formed via intricate chemical cascades employing rich, yet highly erratic, carbocation chemistry. It is currently not well understood how these biocatalysts achieve chemical control. Here, we illustrate the catalytic control exerted by trichodiene synthase, and in particular, we discover two features that could be general catalytic tools adopted by other terpenoid cyclases. First, to avoid formation of byproducts, the enzyme raises the energy of bisabolyl carbocation, which is a general mechanistic branching point in many sesquiterpene cyclases, resulting in an essentially concerted cyclization cascade. Second, we identify a sulfur-carbocation dative bonding interaction that anchors the bisabolyl cation in a reactive conformation, avoiding tumbling and premature deprotonation. Specifically, Met73 acts as a chameleon, shifting from an initial sulfur-π interaction in the Michaelis complex to a sulfur-carbocation complex during catalysis.

Entities:  

Keywords:  QM/MM simulations; enzyme catalysis; sulfur–cation interaction; sulfur–π interaction; terpene cyclases

Year:  2016        PMID: 29399379      PMCID: PMC5793923          DOI: 10.1021/acscatal.6b02584

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  37 in total

1.  Quantum chemical dissection of the classic terpinyl/pinyl/bornyl/camphyl cation conundrum-the role of pyrophosphate in manipulating pathways to monoterpenes.

Authors:  Young J Hong; Dean J Tantillo
Journal:  Org Biomol Chem       Date:  2010-08-19       Impact factor: 3.876

2.  Collective Reaction Coordinate for Hybrid Quantum and Molecular Mechanics Simulations: A Case Study of the Hydride Transfer in Dihydrofolate Reductase.

Authors:  Dvir Doron; Amnon Kohen; Dan Thomas Major
Journal:  J Chem Theory Comput       Date:  2012-06-25       Impact factor: 6.006

3.  Pre-steady-state kinetic analysis of the trichodiene synthase reaction pathway.

Authors:  D E Cane; H T Chiu; P H Liang; K S Anderson
Journal:  Biochemistry       Date:  1997-07-08       Impact factor: 3.162

Review 4.  The rise of chemodiversity in plants.

Authors:  Jing-Ke Weng; Ryan N Philippe; Joseph P Noel
Journal:  Science       Date:  2012-06-29       Impact factor: 47.728

5.  Triple shifts and thioether assistance in rearrangements associated with an unusual biomethylation of the sterol side chain.

Authors:  Young J Hong; José-Luis Giner; Dean J Tantillo
Journal:  J Org Chem       Date:  2013-01-16       Impact factor: 4.354

6.  X-ray crystal structures of D100E trichodiene synthase and its pyrophosphate complex reveal the basis for terpene product diversity.

Authors:  Michael J Rynkiewicz; David E Cane; David W Christianson
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

Review 7.  Aromatic rings in chemical and biological recognition: energetics and structures.

Authors:  Laura M Salonen; Manuel Ellermann; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-28       Impact factor: 15.336

8.  Electrostatic effects on (di)terpene synthase product outcome.

Authors:  Ke Zhou; Reuben J Peters
Journal:  Chem Commun (Camb)       Date:  2011-02-08       Impact factor: 6.222

9.  Cu(I) recognition via cation-pi and methionine interactions in CusF.

Authors:  Yi Xue; Anna V Davis; Gurusamy Balakrishnan; Jay P Stasser; Benjamin M Staehlin; Pamela Focia; Thomas G Spiro; James E Penner-Hahn; Thomas V O'Halloran
Journal:  Nat Chem Biol       Date:  2007-12-23       Impact factor: 15.040

10.  Trichodiene synthase. Probing the role of the highly conserved aspartate-rich region by site-directed mutagenesis.

Authors:  D E Cane; Q Xue; B C Fitzsimons
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

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  11 in total

Review 1.  Synthetic biology, combinatorial biosynthesis, and chemo‑enzymatic synthesis of isoprenoids.

Authors:  Alexandra A Malico; Miles A Calzini; Anuran K Gayen; Gavin J Williams
Journal:  J Ind Microbiol Biotechnol       Date:  2020-09-03       Impact factor: 3.346

2.  Comment on "Substrate Folding Modes in Trichodiene Synthase: A Determinant of Chemo- and Stereoselectivity".

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2017-10-09       Impact factor: 13.084

3.  Crystal Structure of Cucumene Synthase, a Terpenoid Cyclase That Generates a Linear Triquinane Sesquiterpene.

Authors:  Patrick N Blank; Travis A Pemberton; Jeng-Yeong Chow; C Dale Poulter; David W Christianson
Journal:  Biochemistry       Date:  2018-10-22       Impact factor: 3.162

4.  Expression of the Fusarium graminearum terpenome and involvement of the endoplasmic reticulum-derived toxisome.

Authors:  Christopher M Flynn; Karen Broz; Wilfried Jonkers; Claudia Schmidt-Dannert; H Corby Kistler
Journal:  Fungal Genet Biol       Date:  2019-01-18       Impact factor: 3.495

Review 5.  Towards an understanding of oleate hydratases and their application in industrial processes.

Authors:  Sophia Prem; Carl P O Helmer; Nicole Dimos; Stephanie Himpich; Thomas Brück; Daniel Garbe; Bernhard Loll
Journal:  Microb Cell Fact       Date:  2022-04-09       Impact factor: 5.328

6.  Unusual (2R,6R)-bicyclo[3.1.1]heptane ring construction in fungal α-trans-bergamotene biosynthesis.

Authors:  Yan-Hua Wen; Tian-Jiao Chen; Long-Yu Jiang; Li Li; Mengbo Guo; Yu Peng; Jing-Jing Chen; Fei Pei; Jin-Ling Yang; Rui-Shan Wang; Ting Gong; Ping Zhu
Journal:  iScience       Date:  2022-03-10

7.  Biotechnological potential and initial characterization of two novel sesquiterpene synthases from Basidiomycota Coniophora puteana for heterologous production of δ-cadinol.

Authors:  Marion Ringel; Nicole Dimos; Stephanie Himpich; Martina Haack; Claudia Huber; Wolfgang Eisenreich; Gerhard Schenk; Bernhard Loll; Thomas Brück
Journal:  Microb Cell Fact       Date:  2022-04-19       Impact factor: 6.352

Review 8.  Predictive Engineering of Class I Terpene Synthases Using Experimental and Computational Approaches.

Authors:  Nicole G H Leferink; Nigel S Scrutton
Journal:  Chembiochem       Date:  2021-11-03       Impact factor: 3.461

Review 9.  Current understanding and biotechnological application of the bacterial diterpene synthase CotB2.

Authors:  Ronja Driller; Daniel Garbe; Norbert Mehlmer; Monika Fuchs; Keren Raz; Dan Thomas Major; Thomas Brück; Bernhard Loll
Journal:  Beilstein J Org Chem       Date:  2019-10-02       Impact factor: 2.883

10.  Understanding the role of active site residues in CotB2 catalysis using a cluster model.

Authors:  Keren Raz; Ronja Driller; Thomas Brück; Bernhard Loll; Dan T Major
Journal:  Beilstein J Org Chem       Date:  2020-01-08       Impact factor: 2.883

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