Literature DB >> 21292013

A nonparametric Riemannian framework for processing high angular resolution diffusion images and its applications to ODF-based morphometry.

Alvina Goh1, Christophe Lenglet, Paul M Thompson, René Vidal.   

Abstract

High angular resolution diffusion imaging (HARDI) has become an important technique for imaging complex oriented structures in the brain and other anatomical tissues. This has motivated the recent development of several methods for computing the orientation probability density function (PDF) at each voxel. However, much less work has been done on developing techniques for filtering, interpolation, averaging and principal geodesic analysis of orientation PDF fields. In this paper, we present a Riemannian framework for performing such operations. The proposed framework does not require that the orientation PDFs be represented by any fixed parameterization, such as a mixture of von Mises-Fisher distributions or a spherical harmonic expansion. Instead, we use a nonparametric representation of the orientation PDF. We exploit the fact that under the square-root re-parameterization, the space of orientation PDFs forms a Riemannian manifold: the positive orthant of the unit Hilbert sphere. We show that various orientation PDF processing operations, such as filtering, interpolation, averaging and principal geodesic analysis, may be posed as optimization problems on the Hilbert sphere, and can be solved using Riemannian gradient descent. We illustrate these concepts with numerous experiments on synthetic, phantom and real datasets. We show their application to studying left/right brain asymmetries.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2011        PMID: 21292013      PMCID: PMC3085642          DOI: 10.1016/j.neuroimage.2011.01.053

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  59 in total

1.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

2.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

3.  Genetic influences on brain asymmetry: a DTI study of 374 twins and siblings.

Authors:  Neda Jahanshad; Agatha D Lee; Marina Barysheva; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2010-04-27       Impact factor: 6.556

4.  Handedness and cerebral anatomical asymmetries in young adult males.

Authors:  Pierre-Yves Hervé; Fabrice Crivello; Guy Perchey; Bernard Mazoyer; Nathalie Tzourio-Mazoyer
Journal:  Neuroimage       Date:  2005-09-28       Impact factor: 6.556

5.  Log-Euclidean metrics for fast and simple calculus on diffusion tensors.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

6.  Mean template for tensor-based morphometry using deformation tensors.

Authors:  Natasha Leporé; Caroline Brun; Xavier Pennec; Yi-Yu Chou; Oscar L Lopez; Howard J Aizenstein; James T Becker; Arthur W Toga; Paul M Thompson
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

7.  Estimation of fiber orientation probability density functions in high angular resolution diffusion imaging.

Authors:  Antonio Tristán-Vega; Carl-Fredrik Westin; Santiago Aja-Fernández
Journal:  Neuroimage       Date:  2009-04-22       Impact factor: 6.556

8.  Structural asymmetries in the infant language and sensori-motor networks.

Authors:  J Dubois; L Hertz-Pannier; A Cachia; J F Mangin; D Le Bihan; G Dehaene-Lambertz
Journal:  Cereb Cortex       Date:  2008-06-17       Impact factor: 5.357

9.  Genetics of brain fiber architecture and intellectual performance.

Authors:  Ming-Chang Chiang; Marina Barysheva; David W Shattuck; Agatha D Lee; Sarah K Madsen; Christina Avedissian; Andrea D Klunder; Arthur W Toga; Katie L McMahon; Greig I de Zubicaray; Margaret J Wright; Anuj Srivastava; Nikolay Balov; Paul M Thompson
Journal:  J Neurosci       Date:  2009-02-18       Impact factor: 6.167

10.  New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models.

Authors:  Cyril Poupon; Bernard Rieul; Irina Kezele; Muriel Perrin; Fabrice Poupon; Jean-François Mangin
Journal:  Magn Reson Med       Date:  2008-12       Impact factor: 4.668

View more
  13 in total

1.  The Center for Computational Biology: resources, achievements, and challenges.

Authors:  Arthur W Toga; Ivo D Dinov; Paul M Thompson; Roger P Woods; John D Van Horn; David W Shattuck; D Stott Parker
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

2.  Spatial HARDI: improved visualization of complex white matter architecture with Bayesian spatial regularization.

Authors:  Ashish Raj; Christopher Hess; Pratik Mukherjee
Journal:  Neuroimage       Date:  2010-07-27       Impact factor: 6.556

Review 3.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

4.  SR-HARDI: Spatially Regularizing High Angular Resolution Diffusion Imaging.

Authors:  Shangbang Rao; Joseph G Ibrahim; Jian Cheng; Pew-Thian Yap; Hongtu Zhu
Journal:  J Comput Graph Stat       Date:  2015-11-11       Impact factor: 2.302

5.  Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging.

Authors:  Hyunwoo J Kim; Nagesh Adluru; Heemanshu Suri; Baba C Vemuri; Sterling C Johnson; Vikas Singh
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2017-11-09

6.  Kernel regression estimation of fiber orientation mixtures in diffusion MRI.

Authors:  Ryan P Cabeen; Mark E Bastin; David H Laidlaw
Journal:  Neuroimage       Date:  2015-12-09       Impact factor: 6.556

7.  GROUP ACTION INDUCED AVERAGING FOR HARDI PROCESSING.

Authors:  H Ertan Cetingül; Bijan Afsari; Margaret J Wright; Paul M Thompson; Rene Vidal
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

8.  Canonical Correlation Analysis on Riemannian Manifolds and Its Applications.

Authors:  Hyunwoo J Kim; Nagesh Adluru; Barbara B Bendlin; Sterling C Johnson; Baba C Vemuri; Vikas Singh
Journal:  Comput Vis ECCV       Date:  2014

9.  Non-local robust detection of DTI white matter differences with small databases.

Authors:  Olivier Commowick; Aymeric Stamm
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

10.  Segmentation of high angular resolution diffusion MRI using sparse riemannian manifold clustering.

Authors:  H Ertan Çetingül; Margaret J Wright; Paul M Thompson; René Vidal
Journal:  IEEE Trans Med Imaging       Date:  2013-10-03       Impact factor: 10.048

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.